mRNA_L-elsbetiae_contig5983.14486.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5983.14486.1
Unique NamemRNA_L-elsbetiae_contig5983.14486.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5983.14486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5983contigL-elsbetiae_contig5983:3026..4501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size441
Cds size441
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5983.14486.1prot_L-elsbetiae_contig5983.14486.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5983 3026..4501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.0311623-CDS-L-elsbetiae_contig5983:3025..31771622816649.0311623-CDS-L-elsbetiae_contig5983:3025..3177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5983 3026..3177 +
1691683711.4222076-CDS-L-elsbetiae_contig5983:3025..31771691683711.4222076-CDS-L-elsbetiae_contig5983:3025..3177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5983 3026..3177 +
1622816649.0429404-CDS-L-elsbetiae_contig5983:3727..38421622816649.0429404-CDS-L-elsbetiae_contig5983:3727..3842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5983 3728..3842 +
1691683711.4341683-CDS-L-elsbetiae_contig5983:3727..38421691683711.4341683-CDS-L-elsbetiae_contig5983:3727..3842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5983 3728..3842 +
1622816649.0556524-CDS-L-elsbetiae_contig5983:4054..40901622816649.0556524-CDS-L-elsbetiae_contig5983:4054..4090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5983 4055..4090 +
1691683711.4465036-CDS-L-elsbetiae_contig5983:4054..40901691683711.4465036-CDS-L-elsbetiae_contig5983:4054..4090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5983 4055..4090 +
1622816649.067912-CDS-L-elsbetiae_contig5983:4363..45011622816649.067912-CDS-L-elsbetiae_contig5983:4363..4501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5983 4364..4501 +
1691683711.457053-CDS-L-elsbetiae_contig5983:4363..45011691683711.457053-CDS-L-elsbetiae_contig5983:4363..4501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5983 4364..4501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5983.14486.1

>prot_L-elsbetiae_contig5983.14486.1 ID=prot_L-elsbetiae_contig5983.14486.1|Name=mRNA_L-elsbetiae_contig5983.14486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MPPTRFTQPKRRPTLPDLLGSSNKLVAQRRRKRKHHSQTFGGRLWHGLKD
RFAAWQHRSRAVGLHILEYHPWAGLLKPSTSNLTLTRGQLSILIFAQVMV
QMMVEACFQGNASDTRTKTTQIVVGLAATLPASIIIPSAFAASATPP
back to top

mRNA from alignment at L-elsbetiae_contig5983:3026..4501+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5983.14486.1 ID=mRNA_L-elsbetiae_contig5983.14486.1|Name=mRNA_L-elsbetiae_contig5983.14486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1476bp|location=Sequence derived from alignment at L-elsbetiae_contig5983:3026..4501+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCAACACGCTTCACACAGCCCAAAAGGCGACCCACTCTGCCGGA
TCTGCTGGGTTCGAGTAACAAACTGGTTGCTCAGAGAAGGCGCAAACGGA
AACACCATAGTCAAACTTTCGGAGGACGGTTGTGGCACGGCCTCAAGGAT
AGGTGAGAACAGTTAGCACCCTGGTGCAAGCGTCCGCCTTAACCTACAAA
GTGAAGGCTGAACCTCAATATTTCAACATACAGACACTCTGGGAGCACTC
TCTATAATTCGGTAGGCCAGGCCGAAAATTGCTGGAGATACCGGGAAGTG
TGGGGTAAATAATGACTGGTTCCTCGGAGACTGAATGGCCCGCTCAAGCG
CCATGCTTTGTTCTCGGCCAGCGGACCACCCGAGGCGCTTGCTTGCGTCG
TTGAGCGCGATACGTTATGCGCTTTTGAAAAACTACAGCCTATGTAGATG
CCAAGTTCAATACACCAAACTTGGGCGCGCACACACATACACAAGAACAA
GATTGTTGTTCGTGAGATGTACAGTTCATCGTGCTCTTTGGTGGCCGGTG
TTCTTCATGCTTCCTCAGACCGAGATACGAAGTCGATCCGGGGTAGGCCA
TCATTTGCGCGCGATCCCAAGACAAGATAAGCTGTACCAACGATATGAAA
GCCTGGTTTTTCGGAACCAACGTGAGCACGCACACCGGCGTGTGCCCAAC
AGGTTTGCTGCCTGGCAACACCGCAGCCGCGCTGTTGGACTGCACATTCT
GGAGTACCACCCTTGGGCCGGATTACTGAAGCCATCGACCAGCAACCTCA
CCCTTACGCGGGGACAAGTGAGCAGCGGTGATGCTGCTAGAAGCTGCAAG
GCGCAAGGCTTGTTTGTTGTCCCTGTTTAAATACCAGCGCAAAGGAGTAG
AATATAAAAAAGGAGTCGGCAAACCACTACTCAACCGACGCGCGCCCAAT
GCATTGCTTTCTTGGTACAACATCCCATGTGACCCGTGCTCCCAACCCGT
TTCGTTATCGTTCCCGCTCGTGCCAACAGCTCTCGATACTGATCTTCGCC
CAAGTGATGGTCCAGGTGAGTAACCGTCGTACTGTCAACGTTTGGAAGAG
CGCGAGCTATCAATGTGCCCAGAAGGGTAGTGCTTCCTCTTTGGGGGGTA
TTATCGTTCGGAACTAGCGGTTTGTGTCGCACAACATGTCACGGGCGTTT
GGCTGTGCACCGTCGCGATGGACGAGAGTGTTGGGGTTCAATTGACAATG
CGCCGAAACACACACTTCAAGGAAGCAACCCCCTCGACCCAACCCCTCTT
TGTGACTCGCTCTCCCGTGCACTATTCGGATCGCTCAGATGATGGTTGAA
GCATGTTTTCAGGGCAACGCATCTGATACTAGGACCAAGACCACCCAAAT
CGTTGTTGGACTGGCCGCCACGCTGCCGGCTTCGATCATCATTCCGTCGG
CATTCGCAGCCTCTGCTACTCCCCCA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5983:3026..4501+

>mRNA_L-elsbetiae_contig5983.14486.1 ID=mRNA_L-elsbetiae_contig5983.14486.1|Name=mRNA_L-elsbetiae_contig5983.14486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig5983:3026..4501+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCAACACGCTTCACACAGCCCAAAAGGCGACCCACTCTGCCGGA
TCTGCTGGGTTCGAGTAACAAACTGGTTGCTCAGAGAAGGCGCAAACGGA
AACACCATAGTCAAACTTTCGGAGGACGGTTGTGGCACGGCCTCAAGGAT
AGATGCCCCCAACACGCTTCACACAGCCCAAAAGGCGACCCACTCTGCCG
GATCTGCTGGGTTCGAGTAACAAACTGGTTGCTCAGAGAAGGCGCAAACG
GAAACACCATAGTCAAACTTTCGGAGGACGGTTGTGGCACGGCCTCAAGG
ATAGGTTTGCTGCCTGGCAACACCGCAGCCGCGCTGTTGGACTGCACATT
CTGGAGTACCACCCTTGGGCCGGATTACTGAAGCCATCGACCAGCAACCT
CACCCTTACGCGGGGACAAGTTTGCTGCCTGGCAACACCGCAGCCGCGCT
GTTGGACTGCACATTCTGGAGTACCACCCTTGGGCCGGATTACTGAAGCC
ATCGACCAGCAACCTCACCCTTACGCGGGGACAACTCTCGATACTGATCT
TCGCCCAAGTGATGGTCCAGCTCTCGATACTGATCTTCGCCCAAGTGATG
GTCCAGATGATGGTTGAAGCATGTTTTCAGGGCAACGCATCTGATACTAG
GACCAAGACCACCCAAATCGTTGTTGGACTGGCCGCCACGCTGCCGGCTT
CGATCATCATTCCGTCGGCATTCGCAGCCTCTGCTACTCCCCCAATGATG
GTTGAAGCATGTTTTCAGGGCAACGCATCTGATACTAGGACCAAGACCAC
CCAAATCGTTGTTGGACTGGCCGCCACGCTGCCGGCTTCGATCATCATTC
CGTCGGCATTCGCAGCCTCTGCTACTCCCCCA
back to top