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Homology
BLAST of mRNA_L-elsbetiae_contig598.14483.1 vs. uniprot
Match: D8LK01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK01_ECTSI) HSP 1 Score: 163 bits (412), Expect = 2.560e-46 Identity = 79/94 (84.04%), Postives = 87/94 (92.55%), Query Frame = 1
Query: 1 MSLQGSIHTWSDGIGYGAFIPTDRAYYNVRTPRASGRRPSSEQLREYRRNNVTGGIDTHRSDMSFGKTAESVRGGREGNPRAREATKSLTSGEV 282
MSLQGSIHTWSDGIGYGAF+PTDRAY+NVRTPRAS RRPSSE +REYRRNNVT GIDTHRSD+SFG+ ES+RGG +G+ RAREATKSLTSGEV
Sbjct: 1 MSLQGSIHTWSDGIGYGAFMPTDRAYFNVRTPRASVRRPSSENVREYRRNNVTAGIDTHRSDVSFGRNTESIRGGVDGDSRAREATKSLTSGEV 94
BLAST of mRNA_L-elsbetiae_contig598.14483.1 vs. uniprot
Match: A0A6H5KS57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS57_9PHAE) HSP 1 Score: 119 bits (299), Expect = 6.020e-30 Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1
Query: 937 PPSPLSAPSAARPPR-HALDPVFDRHHKYDLIAEERAAQGGEVTGRFGDVHGSSVLAASLLTSELSTPWSHVLRGQRW 1167
PP+P SA A+PPR +LDPVFDRHHKYDL+AEERAA+G VTGRFG + G SVLAASLLTSELSTPWSHVLRGQ+W
Sbjct: 2 PPAPSSA---AKPPRFRSLDPVFDRHHKYDLVAEERAAEGMMVTGRFGPIQGPSVLAASLLTSELSTPWSHVLRGQKW 76
BLAST of mRNA_L-elsbetiae_contig598.14483.1 vs. uniprot
Match: A0A835YTX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX7_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.770e-11 Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 7 LQGSIHTWSDGIGYGAFIPTDRAYYNVRTPRASGRRPSSEQLREYRRNNVTGGIDTHRSDMSFGKTAESVRGGREGNPRAREATKSLTSGEV 282
+ GS H +DG G G ++P+D+A+YN+ T R R + Q YRR+N GI+THRSD+S+G T + G A LTSGEV
Sbjct: 1 MHGSKHRMTDGYGCGQYVPSDKAFYNMHTARPGDHRRPTNQT--YRRDNSLVGIETHRSDISYGHTVARISTGPNAERLATLHATMLTSGEV 90
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-06_007640.1 |
| Exons | 3 |
| Model size | 1170 |
| Cds size | 1170 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816648.8134258-CDS-L-elsbetiae_contig598:27428..28319 | 1622816648.8134258-CDS-L-elsbetiae_contig598:27428..28319 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig598 27429..28319 - |
| 1691683711.2869034-CDS-L-elsbetiae_contig598:27428..28319 | 1691683711.2869034-CDS-L-elsbetiae_contig598:27428..28319 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig598 27429..28319 - |
| 1622816648.8244567-CDS-L-elsbetiae_contig598:28840..29075 | 1622816648.8244567-CDS-L-elsbetiae_contig598:28840..29075 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig598 28841..29075 - |
| 1691683711.2969482-CDS-L-elsbetiae_contig598:28840..29075 | 1691683711.2969482-CDS-L-elsbetiae_contig598:28840..29075 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig598 28841..29075 - |
| 1622816648.83759-CDS-L-elsbetiae_contig598:29345..29389 | 1622816648.83759-CDS-L-elsbetiae_contig598:29345..29389 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig598 29346..29389 - |
| 1691683711.3064053-CDS-L-elsbetiae_contig598:29345..29389 | 1691683711.3064053-CDS-L-elsbetiae_contig598:29345..29389 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig598 29346..29389 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig598.14483.1 >prot_L-elsbetiae_contig598.14483.1 ID=prot_L-elsbetiae_contig598.14483.1|Name=mRNA_L-elsbetiae_contig598.14483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=390bp
MSLQGSIHTWSDGIGYGAFIPTDRAYYNVRTPRASGRRPSSEQLREYRRN
NVTGGIDTHRSDMSFGKTAESVRGGREGNPRAREATKSLTSGEVGGFVWP
AERARDGDVETILASSSAAASNGSVVASSLSLSGRRGSKNAIPPTLLSPH
SVKRHQKAAEAQVVSARERERRLPQHQPLRGEGIKMLPSSHRSGGSTQRS
DSTYAPSSSSIGSSTSSRQSSFRSIASPSSEHRNSGRRSSSSSSSSSSSS
RNRSSSSSSSSNSRTPRPTHYDATNKGGTLIAAEQQLSHQSSKSSARENR
LRPPTLLAHGAPPPSPLSAPSAARPPRHALDPVFDRHHKYDLIAEERAAQ
GGEVTGRFGDVHGSSVLAASLLTSELSTPWSHVLRGQRW* back to topmRNA from alignment at L-elsbetiae_contig598:27429..29389- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig598.14483.1 ID=mRNA_L-elsbetiae_contig598.14483.1|Name=mRNA_L-elsbetiae_contig598.14483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1961bp|location=Sequence derived from alignment at L-elsbetiae_contig598:27429..29389- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTCTACAGGGCTCGATTCATACGTGGTCAGACGGCATTGGGTAAGC
ACTTTTACTACATACTTACCTCCCACCCATGTCTAAAACTCTCCTTTGTT
ATGTACCCCCCTTGTGCTACATTTGGCATGTACTGTAAGAGACCGTAGTA
CAATAGTGCTGCACGTCGGGTTTACTTACTCTTGAAGCCACGACTGGAAT
ATTTCGCCCACCATGATCTCCGTGTTTGAGACGCCGAGATATATCTAGGT
TTGCGCACATGCACGCATTTTTATCTTCGGCGCAATACAACATCCTTGGA
TATTGCGCCTGAAGGTATGGTGCTTTCATCCCGACCGACCGAGCGTACTA
CAACGTGCGAACGCCGCGGGCTAGCGGGCGACGGCCGTCGAGCGAGCAGC
TGAGAGAGTACCGACGGAACAATGTCACAGGTGGCATAGATACTCATCGA
TCTGACATGTCCTTTGGGAAGACGGCAGAGAGTGTTCGCGGTGGCCGAGA
AGGTAATCCCAGGGCACGAGAAGCCACAAAAAGCTTGACCAGCGGGGAGG
TGAGGTGACAATCGATGCATTTTCGGATCCAATGTAGGTATGTATCTAGA
TACATGGCTTGGTCTAGCTCGTGTATTATCTACTATGTAGACTAGACGCT
CTATCTTAGCTATATTCGAAACGCATTGGTCGCGTGCTGAGTATGGTAGA
GTTGCAGATATATTCCGATAGAAAAATAGGCAACAAATGCCATGAGACTA
TATTTGCGCATGGGTACCAAACATTCTTCAACTACACACAGGTTGGTGCA
TAATTTACTTTGCTCGACATGTTCGAATGTGCGACGTTCCTCTCCGAAAG
GGGGTTGCCGAAGGTACTACTGTAGATACAATGTAGGTTCAGGATGAATA
GATACAGCTATGCTTTATATCATCAATGCATGTAGCAAGCAGAACTAGCG
ATGTAGTTCAGGTTTTCGCATGAATGGTGTGGTACTGCTGTATCTAATAC
ATCGACAACGCTTACGCATACATTGCCTGTTTTACGTCAAACATTGGCCT
TAACTTTCGACCAAAACAAGGTGGGGGGTTTCGTTTGGCCGGCCGAGCGA
GCACGTGACGGGGATGTCGAAACGATCCTCGCATCGTCATCGGCAGCAGC
ATCAAACGGATCAGTGGTGGCATCTTCGCTGTCTCTGTCGGGTAGAAGAG
GGTCGAAAAACGCAATACCACCGACTTTGCTGTCGCCTCACTCTGTGAAA
CGGCACCAAAAGGCAGCGGAAGCACAGGTTGTCTCTGCCAGAGAACGAGA
GCGACGACTCCCGCAGCACCAGCCTCTTCGCGGAGAAGGTATCAAAATGC
TGCCTTCATCCCATCGTAGTGGCGGCTCCACTCAGCGCTCCGACTCTACC
TACGCTCCGTCCTCTTCGTCCATTGGCTCTAGCACCAGCTCGAGGCAGTC
GTCGTTCAGGTCAATAGCATCACCATCCAGCGAACACCGCAACAGTGGCC
GCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAACAGA
AGTAGCAGCAGCAGCAGCAGCAGCAATAGCCGCACGCCGCGTCCTACACA
CTATGACGCCACAAATAAAGGCGGCACCCTCATCGCCGCCGAACAGCAGC
TTTCTCACCAAAGCAGCAAGAGCAGCGCGCGAGAAAATAGGTTGAGACCA
CCGACTCTGCTTGCTCACGGCGCGCCACCGCCATCACCCTTGTCTGCGCC
GTCGGCGGCCAGGCCTCCGCGCCACGCTCTCGACCCCGTGTTCGACCGGC
ACCATAAGTACGACCTGATCGCAGAGGAGCGGGCGGCGCAGGGAGGAGAG
GTGACCGGCCGCTTCGGTGACGTCCACGGATCGTCGGTGCTCGCAGCCTC
GCTGTTAACTTCGGAGCTTTCGACCCCGTGGTCGCACGTACTACGGGGGC
AACGGTGGTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig598:27429..29389- >mRNA_L-elsbetiae_contig598.14483.1 ID=mRNA_L-elsbetiae_contig598.14483.1|Name=mRNA_L-elsbetiae_contig598.14483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2340bp|location=Sequence derived from alignment at L-elsbetiae_contig598:27429..29389- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTCTACAGGGCTCGATTCATACGTGGTCAGACGGCATTGGATGAGT
CTACAGGGCTCGATTCATACGTGGTCAGACGGCATTGGGTATGGTGCTTT
CATCCCGACCGACCGAGCGTACTACAACGTGCGAACGCCGCGGGCTAGCG
GGCGACGGCCGTCGAGCGAGCAGCTGAGAGAGTACCGACGGAACAATGTC
ACAGGTGGCATAGATACTCATCGATCTGACATGTCCTTTGGGAAGACGGC
AGAGAGTGTTCGCGGTGGCCGAGAAGGTAATCCCAGGGCACGAGAAGCCA
CAAAAAGCTTGACCAGCGGGGAGGTATGGTGCTTTCATCCCGACCGACCG
AGCGTACTACAACGTGCGAACGCCGCGGGCTAGCGGGCGACGGCCGTCGA
GCGAGCAGCTGAGAGAGTACCGACGGAACAATGTCACAGGTGGCATAGAT
ACTCATCGATCTGACATGTCCTTTGGGAAGACGGCAGAGAGTGTTCGCGG
TGGCCGAGAAGGTAATCCCAGGGCACGAGAAGCCACAAAAAGCTTGACCA
GCGGGGAGGTGGGGGGTTTCGTTTGGCCGGCCGAGCGAGCACGTGACGGG
GATGTCGAAACGATCCTCGCATCGTCATCGGCAGCAGCATCAAACGGATC
AGTGGTGGCATCTTCGCTGTCTCTGTCGGGTAGAAGAGGGTCGAAAAACG
CAATACCACCGACTTTGCTGTCGCCTCACTCTGTGAAACGGCACCAAAAG
GCAGCGGAAGCACAGGTTGTCTCTGCCAGAGAACGAGAGCGACGACTCCC
GCAGCACCAGCCTCTTCGCGGAGAAGGTATCAAAATGCTGCCTTCATCCC
ATCGTAGTGGCGGCTCCACTCAGCGCTCCGACTCTACCTACGCTCCGTCC
TCTTCGTCCATTGGCTCTAGCACCAGCTCGAGGCAGTCGTCGTTCAGGTC
AATAGCATCACCATCCAGCGAACACCGCAACAGTGGCCGCAGAAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAACAGAAGTAGCAGCAGC
AGCAGCAGCAGCAATAGCCGCACGCCGCGTCCTACACACTATGACGCCAC
AAATAAAGGCGGCACCCTCATCGCCGCCGAACAGCAGCTTTCTCACCAAA
GCAGCAAGAGCAGCGCGCGAGAAAATAGGTTGAGACCACCGACTCTGCTT
GCTCACGGCGCGCCACCGCCATCACCCTTGTCTGCGCCGTCGGCGGCCAG
GCCTCCGCGCCACGCTCTCGACCCCGTGTTCGACCGGCACCATAAGTACG
ACCTGATCGCAGAGGAGCGGGCGGCGCAGGGAGGAGAGGTGACCGGCCGC
TTCGGTGACGTCCACGGATCGTCGGTGCTCGCAGCCTCGCTGTTAACTTC
GGAGCTTTCGACCCCGTGGTCGCACGTACTACGGGGGCAACGGTGGTAGG
TGGGGGGTTTCGTTTGGCCGGCCGAGCGAGCACGTGACGGGGATGTCGAA
ACGATCCTCGCATCGTCATCGGCAGCAGCATCAAACGGATCAGTGGTGGC
ATCTTCGCTGTCTCTGTCGGGTAGAAGAGGGTCGAAAAACGCAATACCAC
CGACTTTGCTGTCGCCTCACTCTGTGAAACGGCACCAAAAGGCAGCGGAA
GCACAGGTTGTCTCTGCCAGAGAACGAGAGCGACGACTCCCGCAGCACCA
GCCTCTTCGCGGAGAAGGTATCAAAATGCTGCCTTCATCCCATCGTAGTG
GCGGCTCCACTCAGCGCTCCGACTCTACCTACGCTCCGTCCTCTTCGTCC
ATTGGCTCTAGCACCAGCTCGAGGCAGTCGTCGTTCAGGTCAATAGCATC
ACCATCCAGCGAACACCGCAACAGTGGCCGCAGAAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGGAACAGAAGTAGCAGCAGCAGCAGCAGC
AGCAATAGCCGCACGCCGCGTCCTACACACTATGACGCCACAAATAAAGG
CGGCACCCTCATCGCCGCCGAACAGCAGCTTTCTCACCAAAGCAGCAAGA
GCAGCGCGCGAGAAAATAGGTTGAGACCACCGACTCTGCTTGCTCACGGC
GCGCCACCGCCATCACCCTTGTCTGCGCCGTCGGCGGCCAGGCCTCCGCG
CCACGCTCTCGACCCCGTGTTCGACCGGCACCATAAGTACGACCTGATCG
CAGAGGAGCGGGCGGCGCAGGGAGGAGAGGTGACCGGCCGCTTCGGTGAC
GTCCACGGATCGTCGGTGCTCGCAGCCTCGCTGTTAACTTCGGAGCTTTC
GACCCCGTGGTCGCACGTACTACGGGGGCAACGGTGGTAG back to top
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