mRNA_L-elsbetiae_contig5977.14476.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5977.14476.1
Unique NamemRNA_L-elsbetiae_contig5977.14476.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5977.14476.1 vs. uniprot
Match: D7FSM8_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSM8_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 2.730e-86
Identity = 143/232 (61.64%), Postives = 171/232 (73.71%), Query Frame = 1 
Query:    1 SGILVKKNGSVRLITKNHDTLDHHEFERIRRLGGSYRPQTLRVPRRRPWCCLLQDVVVGKPRVYPGGLLVTRAFGDFSAKLGGTPGVILPDCEEVLEMTIEEDWAEVVIASDGVWDVVPTEEMPALLAKLEGKGAAAAALRSPAINXXXXXXXXXXXDDGSVSGINATVNDAAIL----------------RRRQAQLQGTCAKLVLACVRHRYWELHQSAADNASVVILRF 648
            +G+LVKK+GSV+ IT +HDTL+  E++RIR+LGGSYR QTLR PR+ PWCC++QDVVVGKPRV   GLLVTRAFGDFS KLGGTPG+ILPDCEE+LE+TIEEDWAEVVIASDGVWDV+ TEEMP +LA LE K  A  + R PA               G+++ ++   ++  +L                R RQAQLQGTCAKLVLACVRHRYW LHQ+AADNAS VI+RF
Sbjct:  160 AGVLVKKDGSVQTITNSHDTLNPGEYDRIRKLGGSYRNQTLRSPRKWPWCCVVQDVVVGKPRVC--GLLVTRAFGDFSCKLGGTPGIILPDCEEILELTIEEDWAEVVIASDGVWDVMQTEEMPQILAMLEEKIPAKVSPRIPAA-ANKDFNSNNSSGGGTLAALDYAASERYLLGELSEEHIVTSFGDSARVRQAQLQGTCAKLVLACVRHRYWALHQAAADNASAVIVRF 388
[Close]
BLAST of mRNA_L-elsbetiae_contig5977.14476.1 vs. uniprot
Match: A0A7S3XNF1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNF1_HETAK)

HSP 1 Score: 114 bits (286), Expect = 6.440e-29
Identity = 61/127 (48.03%), Postives = 79/127 (62.20%), Query Frame = 1 
Query:   34 RLITKNHDTLDHHEFERIRRLGGSYRPQTLRVPRRRPWCCLLQDVVVGKPRVYPGGLLVTRAFGDFSAKL---GGTPGVILPDCEEVLEMTIEEDWAEVVI-ASDGVWDVVPTEEMPALLAKLEGKG 402
            R++T +H T +  E  R+R  GG  RPQ  +   R P CC L DV  GKPR YPGGLLVTRAFGD+ +KL   GG PG ++PD   V E+ +E   A +++ ASDGVWD +P EE+  +L    G G
Sbjct:   17 RMLTDDHGTTNEAEVARLRAAGGEVRPQLQKAFGRFPRCCRLVDVPAGKPRAYPGGLLVTRAFGDYHSKLASLGGAPGTVVPDFSAVREVALEAGTAHLLLMASDGVWDALPREELLEILLGGGGDG 143
[Close]
BLAST of mRNA_L-elsbetiae_contig5977.14476.1 vs. uniprot
Match: A0A7S2CP40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP40_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.840e-18
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   40 ITKNHDTLDHHEFERIRRLGGSYRPQTLRVPRRRPWCCLLQDVVVGKPRVYPGGLLVTRAFGDFSAKL---GGTPGVILPDCEEVLEMTIEEDWAEVVIASDGVWDVV 354
            ++ +H+T +  E  R+R  G     + +R   R+  CC+ + V  GK RV+PGGL +TR+FGD+ AKL   GG P  +L + EE+ +M IE+ W  ++IASDG WD +
Sbjct:   67 LSDDHNTDNQKECARVRNAGAKVEQELVR---RKIGCCMTEKVPAGKQRVWPGGLAITRSFGDYHAKLTAFGGVPDSVLYEFEELRKMDIEDRWQGLIIASDGAWDAL 171
[Close]
BLAST of mRNA_L-elsbetiae_contig5977.14476.1 vs. uniprot
Match: A0A835Z4T9_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.780e-17
Identity = 80/217 (36.87%), Postives = 107/217 (49.31%), Query Frame = 1 
Query:   40 ITKNHDTLDHHEFERIRRLGGSY----RPQTLRVPRRRPWCCLLQDVVVGKPRVYPGGLLVTRAFGDFSAK---LGGTPGVILPDCEEVLEMTIEEDWAE-------VVIASDGVWDVVPTEEMPALLAKLEGKGAAAAALRSPAINXXXXXXXXXXXDDGSVSGINATVNDAAILRRRQAQLQGTCAKLVLACVRHRYWELHQSAADNASVVILRF 648
            +++NH TL+  E  RIR +GG      R + +R P   P CC+       KPRVYPGGLLVTRA+GDF AK   LGG PG ++     +  + ++    +       V++ASDGVWD VP   M A L +L  +  A           XXXXXXXXXX   S+        D  +LR        TC  LV+       W  H   ADN S ++L++
Sbjct:  256 LSENHGTLNSAETARIRSVGGELQVRGRARRVRAP---PLCCVPWKSAPRKPRVYPGGLLVTRAYGDFYAKRAPLGGLPGALICGHGRLSRVELDGFGTDGGGGAGVVILASDGVWDAVPVWRMAAALERLVLEDIADED------EGXXXXXXXXXXXXXSLGASRHAGEDPVLLR--------TCKSLVMRAAEDACWG-HPPHADNVSAILLQY 454
[Close]
BLAST of mRNA_L-elsbetiae_contig5977.14476.1 vs. uniprot
Match: A0A7R9XVT0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XVT0_9VIRI)

HSP 1 Score: 62.4 bits (150), Expect = 5.280e-8
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:  166 VVVGKPRVYPGGLLVTRAFGDFSAK--LGGTPGVILPDCEEVLEMTIEEDWAEVVIASDGVWDVVPTEEMPALLAKLEGKGAAA 411
            ++VG  RVYPGGL V+R+ GD  A   + GTP V   D   +        WA++V+ASDG+WDV    E+ A + +++ KGAAA
Sbjct:  141 MLVGPLRVYPGGLAVSRSLGDARAHACVMGTPHVCQVDLGRLPPAV---GWAQLVVASDGLWDVAKDSEVAAAVRRVKAKGAAA 221
[Close]
BLAST of mRNA_L-elsbetiae_contig5977.14476.1 vs. uniprot
Match: A0DFQ7_PARTE (PPM-type phosphatase domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DFQ7_PARTE)

HSP 1 Score: 61.6 bits (148), Expect = 1.400e-7
Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 1 
Query:   22 NGSVRLITKNHDTLDHHEFERIRRLGGS-YRPQTLRVPRRRPWCCLLQDVVVGKPRVYPGGLLVTRAFGDFSAKL---GGTPGVILPDCEEVLEMTIEEDWAEVVIASDGVWDVVPTEEMPALLAK 387
            N S   ++++H   D  E  RI++ GG  Y+ Q  +           Q V VG  RV PG L V+R FGD  AKL   GG P V++ +  E+    I++D   +V+ASDG++D + + E+  ++ K
Sbjct:  244 NKSALPLSRDHKPCDELEKLRIQKAGGKIYQTQQQQDD---------QQVFVGPLRVLPGRLSVSRTFGDIEAKLERFGGKPNVVVAE-PELRSFKIQDDHQYIVLASDGIFDKMSSNEVVDIMTK 359
[Close]
BLAST of mRNA_L-elsbetiae_contig5977.14476.1 vs. uniprot
Match: A0A7S3C0M6_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C0M6_9VIRI)

HSP 1 Score: 55.1 bits (131), Expect = 2.510e-5
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:  175 GKPRVYPGGLLVTRAFGDFSAKLGGTPGVILPDCEEVLEMTIEED-WAEVVIASDGVWDVVPTEEMPALLAKLEGKGAAAAALRSPA 432
            G  RVYPGGL+VTRA GD+     G    I+P+   V  +T+    W+ +V+AS+GVW  +P   +  +L      G AA AL   A
Sbjct:  310 GPLRVYPGGLVVTRALGDY-----GCSAAIIPN-PSVRSITLPPHCWSRLVVASNGVWSALPQRAVERVLVAHSSAGDAARALADAA 390
[Close]
BLAST of mRNA_L-elsbetiae_contig5977.14476.1 vs. uniprot
Match: A0A3B1ILD4_ASTMX (Protein phosphatase 1A n=3 Tax=Characoidei TaxID=1489739 RepID=A0A3B1ILD4_ASTMX)

HSP 1 Score: 54.3 bits (129), Expect = 3.920e-5
Identity = 41/127 (32.28%), Postives = 58/127 (45.67%), Query Frame = 1 
Query:    1 SGILVKKNGSVRLITKNHDTLDHHEFERIRRLGGSYRPQTLRVPRRRPWCCLLQDVVVGKPRVYPGGLLVTRAFGDFSAKL----GGTPGVILPDCEEVLEMTIEEDWAEVVIASDGVWDVVPTEEM 369
            S  L+ + G V   T++H   +  E ERI+  GG+   Q +                        G L V+RA GDF  K     G T  ++ P+  EV E+  EED   VV+A DG+WDV+  EE+
Sbjct:  160 SRALLSRGGRVHFFTQDHKPSNPLEKERIQNAGGAVMIQRVN-----------------------GSLAVSRALGDFDYKCVHGKGPTEQLVSPE-PEVYEIEREEDDEFVVLACDGIWDVMTNEEL 262
[Close]
BLAST of mRNA_L-elsbetiae_contig5977.14476.1 vs. uniprot
Match: UPI0015AD5CBD (protein phosphatase 1B-like isoform X1 n=2 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AD5CBD)

HSP 1 Score: 53.9 bits (128), Expect = 5.800e-5
Identity = 39/127 (30.71%), Postives = 59/127 (46.46%), Query Frame = 1 
Query:    1 SGILVKKNGSVRLITKNHDTLDHHEFERIRRLGGSYRPQTLRVPRRRPWCCLLQDVVVGKPRVYPGGLLVTRAFGDFSAKL----GGTPGVILPDCEEVLEMTIEEDWAEVVIASDGVWDVVPTEEM 369
            S  ++ ++G VRL T++H   D  E ERI+  GGS   Q +                        G L V+RA GD+  K     G T  ++ P+  EV E+    +   +V+A DG+WDV+  EE+
Sbjct:  147 SRAVLSRHGQVRLCTQDHKPCDPREKERIQNAGGSVMIQRVN-----------------------GSLAVSRALGDYDYKCVDGKGPTEQLVSPE-PEVFEIARAPEDEFLVLACDGIWDVMSNEEL 249
[Close]
BLAST of mRNA_L-elsbetiae_contig5977.14476.1 vs. uniprot
Match: H3AW71_LATCH (PPM-type phosphatase domain-containing protein n=3 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AW71_LATCH)

HSP 1 Score: 53.9 bits (128), Expect = 5.850e-5
Identity = 39/127 (30.71%), Postives = 59/127 (46.46%), Query Frame = 1 
Query:    1 SGILVKKNGSVRLITKNHDTLDHHEFERIRRLGGSYRPQTLRVPRRRPWCCLLQDVVVGKPRVYPGGLLVTRAFGDFSAKL----GGTPGVILPDCEEVLEMTIEEDWAEVVIASDGVWDVVPTEEM 369
            S  ++ +NG V   T++H   +  E ERI+  GGS   Q +                        G L V+RA GD+  K     G T  ++ P+  EV E+  EED   +++A DG+WDV+  EE+
Sbjct:  152 SRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVMIQRVN-----------------------GSLAVSRALGDYDYKCVDGKGPTEQLVSPE-PEVYEILREEDDEFIILACDGIWDVMSNEEL 254
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5977.14476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FSM8_ECTSI2.730e-8661.64PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S3XNF1_HETAK6.440e-2948.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2CP40_9STRA3.840e-1840.74Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A835Z4T9_9STRA4.780e-1736.87Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A7R9XVT0_9VIRI5.280e-842.86Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0DFQ7_PARTE1.400e-734.13PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S3C0M6_9VIRI2.510e-539.08Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A3B1ILD4_ASTMX3.920e-532.28Protein phosphatase 1A n=3 Tax=Characoidei TaxID=1... [more]
UPI0015AD5CBD5.800e-530.71protein phosphatase 1B-like isoform X1 n=2 Tax=Ang... [more]
H3AW71_LATCH5.850e-530.71PPM-type phosphatase domain-containing protein n=3... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5977contigL-elsbetiae_contig5977:6089..11490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.5
Seed ortholog evalue8.6e-71
Seed eggNOG ortholog2880.D7FSM8
KEGG koko:K17506
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-04_000610.1
Exons5
Model size648
Cds size648
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5977.14476.1prot_L-elsbetiae_contig5977.14476.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5977 6089..11490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.1134121-CDS-L-elsbetiae_contig5977:6088..61461622816648.1134121-CDS-L-elsbetiae_contig5977:6088..6146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5977 6089..6146 -
1691683710.754241-CDS-L-elsbetiae_contig5977:6088..61461691683710.754241-CDS-L-elsbetiae_contig5977:6088..6146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5977 6089..6146 -
1622816648.124841-CDS-L-elsbetiae_contig5977:6584..67991622816648.124841-CDS-L-elsbetiae_contig5977:6584..6799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5977 6585..6799 -
1691683710.7652442-CDS-L-elsbetiae_contig5977:6584..67991691683710.7652442-CDS-L-elsbetiae_contig5977:6584..6799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5977 6585..6799 -
1622816648.1356516-CDS-L-elsbetiae_contig5977:7813..79481622816648.1356516-CDS-L-elsbetiae_contig5977:7813..7948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5977 7814..7948 -
1691683710.7743087-CDS-L-elsbetiae_contig5977:7813..79481691683710.7743087-CDS-L-elsbetiae_contig5977:7813..7948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5977 7814..7948 -
1622816648.1464646-CDS-L-elsbetiae_contig5977:8715..88381622816648.1464646-CDS-L-elsbetiae_contig5977:8715..8838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5977 8716..8838 -
1691683710.7841353-CDS-L-elsbetiae_contig5977:8715..88381691683710.7841353-CDS-L-elsbetiae_contig5977:8715..8838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5977 8716..8838 -
1622816648.1571097-CDS-L-elsbetiae_contig5977:11373..114901622816648.1571097-CDS-L-elsbetiae_contig5977:11373..11490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5977 11374..11490 -
1691683710.794975-CDS-L-elsbetiae_contig5977:11373..114901691683710.794975-CDS-L-elsbetiae_contig5977:11373..11490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5977 11374..11490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5977.14476.1

>prot_L-elsbetiae_contig5977.14476.1 ID=prot_L-elsbetiae_contig5977.14476.1|Name=mRNA_L-elsbetiae_contig5977.14476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
SGILVKKNGSVRLITKNHDTLDHHEFERIRRLGGSYRPQTLRVPRRRPWC
CLLQDVVVGKPRVYPGGLLVTRAFGDFSAKLGGTPGVILPDCEEVLEMTI
EEDWAEVVIASDGVWDVVPTEEMPALLAKLEGKGAAAAALRSPAINSSNN
NNNNNNGDDGSVSGINATVNDAAILRRRQAQLQGTCAKLVLACVRHRYWE
LHQSAADNASVVILRF
back to top

mRNA from alignment at L-elsbetiae_contig5977:6089..11490-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5977.14476.1 ID=mRNA_L-elsbetiae_contig5977.14476.1|Name=mRNA_L-elsbetiae_contig5977.14476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5402bp|location=Sequence derived from alignment at L-elsbetiae_contig5977:6089..11490- (Laminarionema elsbetiae ELsaHSoW15)
TCAGGGATTCTGGTGAAGAAAAACGGCAGCGTGCGGTTGATCACCAAGAA
CCACGACACCCTCGACCACCACGAGTTCGAGCGCATACGCCGGCTAGGGG
GGTCCTACCGTCCGCAGGTATTTACATGCATACGACCGGGAAGGATTGCT
TTCATTCTGGTTGGCCCAGTTGTCGTTCCTAGGACTAATAGATTGCGAGA
CAAGTTGCGACATCTCAAGGTGCGACCTTTGAGATATTGACTTGCGCGAG
AGAAGGGGGGCGGAAACGAAGAAAAATACTGGCCACAGGCACGTACAACA
GGTGAAAATTTGATTGAGCACGGCACGACACGCAACTGTGATTAAAATAA
CCCGAAGGGACGCGAGAGACAAAATAAAAATGTCTACTATGTACGTGGAG
AGTGCACACACCCACATCACCGAAAGCCGACGCTACCGAGAAGAACAACT
AATACAAAAACAAAAACTAAGGAAGCAGCCTAGGGTAACCCACACACCCT
AGGCCTTCTTTGAGATATTGACTCGGGTGCAGTAGAGCTTTTACAAGTTC
CATTTCACGGACTTCTAGTTGTAGCGTTCAAGCAGAGAGCCCGTGGGAAC
TGAATATATTGGAGTACAAGTTTTTCGGCGGCTTACGCCGCCACGCTAAC
TACCGCGAGATGCATGAGAATGGTGTGTTGACATGCGTGAGATGCCAAAA
GGTTTGATGTGGATGGACGTGACGCAAATGCATGGGTGTGTACCTTGAAT
GCCGTTGTCTAGAGAATTTGAGGCAAACACCGAGAGTTGCTGCTCAGAGA
GGGGGGTAAACCCTAAAAAACGCCAACCAACCCTCAAACGCCATATGTAG
TCTACATTGTCTCATATATTGAAGATTAATAGTCTATTCCATATCTATAT
CTAGAATTATGTAGAGATTGAATGAATCGGCCATCAGCAACAAAAACACG
CGTGCGCGTTGGCCTAGAGAACATCTCACAAACAGCTCACACAGAGAAGA
AGAACCGCCCACGAAAGAGAGGGGGTTTTGGCGGCGTACGCCGCCACATG
CGGAGTCCCAGCATGAATCTTTTGGCGACTCAAAATGGCGAAAAACATGA
AGCACTTGAGCACATACTAACACACGGAGAGTTTCTTCTCGTCACTCCGG
GGCAACGTACGCAAAAAGAACAGGTGATGATGTAATGCCGCCAAGCTGCA
CAAAACAACGAACCGGTCATGTATATATATACGCCATGCAATTCGAACGG
AGCTGCACAAAAGCACCGCATTCCTAGGTATTTACCCGTCATCTGAAAGC
CGAAAGCTTCCGCACAGATGTTGATCTATATAATACCCTCCGTGCGTGCG
TGCGTGAAAAATGTTTATACTTGGAAGACAACACCAACATAACAACTCCG
GGCAACGTACACAACAAATTAACCGCTCATCATGTATCTACCATGGGCAT
ACATTGAACGGTTGAATGGAGCAAGCTGCTGAAAAAGAACCGCATCCCTC
CCAGTTAACCGTAACTCCACCCGGGCAAAAGGAACAGAGAACAGAGAAGA
GAAGGCAACATACACACACACACGAAGACGTACATAGAGAACGATGGGCT
GGGAGTGAAGTAAACTGCTCAGAGAAAAGAAGGCGACATGACACACACAG
AGACGTAGAGAGCATACGATGAGCTGAGAGTGAAGTAAACTGCCGACGAA
TGAAACTCGCACCATAACTCACGCAACAACCCGAGCTCGCCTCTTATAAC
TGATGATAGACCAGCGAGACGGATGCCACCCCAGCGAAAGAGAGAAAAGA
GAGACAAAGATCGATACAGAGAGCAATGGTCTCGAGGTGGAGGGCACCGT
GGAGCAACCCTGATCGATCGAAACGACCTCCCTAGAACCGGGAAATGACC
GCATGTGTATAAACGCACGCGTATACATTGGCACGCGTCCGGTGCGTTCG
GACCACCTGCAGCCAGCGAGAGGCGGAATGCGTTGCCAAGCGACATGCAG
CCGGAAAAGAGAAAAGAGAGAGACAGACAGAAAGAGAGGTGCAGAGGGCA
ATGGGCTCGAAGTAGAGAGCACCATGGAGCAACCCCGACCGATCGAAACG
CTCTCCCGTTGAAAAATCACTAAAAACGAACCTTACGTGTACTGGCACGT
CAGGCATCGAGAGCTTTCAGATCCCAGAATCTCCAGTCTAAACTCAAGTG
AAAACGTGACATGGCCTGACAGAGCGCGTGCGAGAGCCCGGAGAGTTTTC
TTGGAATAACGAACGGAGAGACAAAATATATCGTATATAACTGTTATAAC
TGAACCATTTTGACATTGCGGGCGGGAAAGAAAAGGTGAATATTGTAAAT
ATGTGCAGACTGGTGATTAAACGACACCACTACCATCAGCGTTGCGGGGA
AGTGACAAAATATATACAGTTTTAGTCACAGAGTAAGACCCATGCCCTGC
CCCGTTTTCCGTGCACAGCAGGCATGATTACCGAGAGTCGTGCTGAAATA
TTCCACGGGTTTCCAGCCGCGGGCAAATTTTCCAAGAACACGGCGTATTT
AACCCTTGCGGCGAGCTGTATACGGATGCATGTATTGCATTCTTGCGGCA
CTGCTTTTATCGATGTTGCTGTTATCGATGGACGGACGTTTCGCTCGTGC
AGACGCTGAGAGTTCCGAGAAGGCGGCCTTGGTGCTGCTTGCTGCAGGAT
GTGGTTGTCGGGAAGCCAAGGGTGTACCCGGGGGGTCTGCTGGTCACGCG
AGCGTTCGGAGACTTTTCCGCCAAGGTCGTATGTACGCTCTCACCGCTGT
GTAACTGCCGAACGCGGATGTTTTCCCTGCGGTTTTGCCTCTTTTTGTGC
GTCGAAAGCCCGTGAGCATAGAAACATAAGGAGTACCTACACAAATACGC
GTGTTTTTGGCATGAGGTGCGGTACGGATTAGAGTTACAAAGTCTCAGTC
TCAACCTGTGTAGGCCGTGGGCAATACAATCTCGAACCAGACGCGACAGC
TTGCCCCCATTTTCAGGTATCCACCCCCTGCCTGCCTGACCGACACGAAC
AAGTGTCGGAAAAAATCTTAATCTTGCTGAATATTTACCCTTGAGGACTC
CTGCAGATAACTTGTGCGACCAACACCTCGGAGCTACTGCTACACTGCTG
TTGCTGTTGCCTGTTGTGTGCCTGTTGTGTGGAGTTGTTGTGATTTCGTG
CGCGCCCCCCGAGGCATTGGTTTTGCACATGAGGGTCCTTTGGGAGCATT
TGAGAGGGAGGGCTGGGCCGCTTTCGTGTAGTGCACGCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCGCCCC
CCCCACCCCCCCCCCCCCAGCCCGCGCCCGCCCGCNNNNNNNNNNCATAA
TGAGGTCCCTTGGGGGGATGTTAGAGGGAGGGGCGGGCCGTTTTTGGTGA
GTGCACCCCCCCCCCCCCCCCCCCTGACGTTCGATCGCCGCCATGCTACG
GCTTTACCCCCGTTCATCGCTCCCCCCCTAAAGCTGGTTGAGCTGGGAGG
AACCCCCGGCGTTATCCTGCCGGATTGCGAAGAAGTGTTGGAGATGACGA
TCGAGGAGGACTGGGCAGAGGTAGTGATCGCGAGCGACGGCGTGTGGGAT
GTGGTTCCGACGGAGGAAATGCCAGCGGTAAGCAACTCGGGGCTATTTTT
ACCCCCCCGGTCAACTTCCCATGTAAAAAACATGTGGCTAGTCTTGGGTC
GTTTATTTCTGCACATTGTCCCGGTTTCTTGAACCCTCGTGCCCAGATGT
TTGCACCCAGTGTGGCTTCTTGGACAGAGCGGGCACAATCGAAAGCGAAG
CAAGGCAACCGTGTACTCAGAAGTACTCCTACTAAATAACAAAGGCGCTA
ACATTGTTGTTGTTTTGTTGGCCACTGACGGCTGGTTTGCGGCAAGGCCC
TCGGCTCTCCCCTCCCCGTCTCCACCAGCGCATGTATCTGTGGATACTTA
ATTCACCACACGTTGAACCCTGCTCGGTGAAATTGCTGCACTCTTGCAGT
GGCATCAGAACATAGCTCCGTCACGGTTAGCATGGGATGTTGGCGGTTAT
ATGTAGACTGGCGACGGGACAGGGCAACCCGCGAACGAGTACAAACATTT
ATTTAACCATTTTTAGGCAGGCGATTATCTAGTACGTAACCCCCAGCAAG
TTTGGTGCGCGAGTGCTCTCAAAGTGGACATTCTCCACCACCTGATTGCC
ACTTGTTCATTCCATGTCTCCACTTGGCCACTTGGCCGCATGCATATCTG
CACCTGTTGTGGAGAGGGGAGGCAGGCAGGGCGTGCGCCGTTGGTGATCA
CCAGGGTCGAAATTGGAAGAGCGGCGCAACGGTCCCACGACGTTTGCTTT
CTGCTCGATGTCGATGCCATGCCCTACAGAGGAACCCGTTCGGCCTCAAC
GGATCTGCCGCGCATGCTGTTTTGAGCAGATTTCAAGAAAACTATGTGCC
GTCATCGGCCAGCCACCTGTACAAAAAATGGAACAGTTTCCAGTTTTTTT
TTCTTGGTCCAAGGGGATCTTCTTCAAGCCTGCTTCCCTCATATGCCAGT
TTGAAGCACAAGTGTCCTCCGACCCTAAATGCCGACCTGTTTATTTCGCC
GCTGTGTTGTTCGCCGCGTTTCTGTCTTTTTTTCGTTGCAGCTCCTGGCG
AAGCTGGAGGGGAAGGGAGCTGCGGCGGCGGCATTACGATCGCCAGCGAT
TAACAGCAGCAACAACAACAACAACAACAACAACGGCGACGACGGCAGTG
TTTCTGGTATTAACGCCACGGTCAATGACGCAGCCATCCTTCGGCGGAGA
CAGGCACAGCTCCAAGGCACTTGTGCGAAGCTCGTCTTGGCGTGCGTGAG
ACACAGGTACACAGGCTCGACGCTTGTCGGGCATACTAAATGTACTATTT
GGTATGGTTGCACCTTTATTTCTAGTGTTTGAGCGATTGAGCAAGCCAAC
TGTTTGCCGACTCTCTCTTCCCTTCCCTTCTGTGGCTCCGAGTGGTTCTT
TCCGCCTCCACGTCGTTTTCTGTTTTTATGTTGTCGCCACGGACGGACCT
CTCTGAGCGCGAGTGTCGATCGATAGGCGTGGTTTCTGAGCGCGTTGAGG
CAACCTCTAGTACAGCAACACAACAGCAACTCTTTTAATAGCATGGTCAC
ACTGGGGTAAAGTTTACGCGAAGCTGATACTTCTGTAAGCGCCTGCCTTG
CCCCTCCAACACTCTCGGCCGACCAGACCCGCTGCAGCGTCGTCCCCCAC
TTGAAGTAGAACTGTTCTGACGTTCTGTTTATCGCTGGCGACAGGTATTG
GGAGCTGCACCAGTCCGCCGCGGACAACGCCAGCGTCGTAATTCTGAGAT
TC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5977:6089..11490-

>mRNA_L-elsbetiae_contig5977.14476.1 ID=mRNA_L-elsbetiae_contig5977.14476.1|Name=mRNA_L-elsbetiae_contig5977.14476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig5977:6089..11490- (Laminarionema elsbetiae ELsaHSoW15)
TCAGGGATTCTGGTGAAGAAAAACGGCAGCGTGCGGTTGATCACCAAGAA
CCACGACACCCTCGACCACCACGAGTTCGAGCGCATACGCCGGCTAGGGG
GGTCCTACCGTCCGCAGTCAGGGATTCTGGTGAAGAAAAACGGCAGCGTG
CGGTTGATCACCAAGAACCACGACACCCTCGACCACCACGAGTTCGAGCG
CATACGCCGGCTAGGGGGGTCCTACCGTCCGCAGACGCTGAGAGTTCCGA
GAAGGCGGCCTTGGTGCTGCTTGCTGCAGGATGTGGTTGTCGGGAAGCCA
AGGGTGTACCCGGGGGGTCTGCTGGTCACGCGAGCGTTCGGAGACTTTTC
CGCCAAGACGCTGAGAGTTCCGAGAAGGCGGCCTTGGTGCTGCTTGCTGC
AGGATGTGGTTGTCGGGAAGCCAAGGGTGTACCCGGGGGGTCTGCTGGTC
ACGCGAGCGTTCGGAGACTTTTCCGCCAAGCTGGGAGGAACCCCCGGCGT
TATCCTGCCGGATTGCGAAGAAGTGTTGGAGATGACGATCGAGGAGGACT
GGGCAGAGGTAGTGATCGCGAGCGACGGCGTGTGGGATGTGGTTCCGACG
GAGGAAATGCCAGCGCTGGGAGGAACCCCCGGCGTTATCCTGCCGGATTG
CGAAGAAGTGTTGGAGATGACGATCGAGGAGGACTGGGCAGAGGTAGTGA
TCGCGAGCGACGGCGTGTGGGATGTGGTTCCGACGGAGGAAATGCCAGCG
CTCCTGGCGAAGCTGGAGGGGAAGGGAGCTGCGGCGGCGGCATTACGATC
GCCAGCGATTAACAGCAGCAACAACAACAACAACAACAACAACGGCGACG
ACGGCAGTGTTTCTGGTATTAACGCCACGGTCAATGACGCAGCCATCCTT
CGGCGGAGACAGGCACAGCTCCAAGGCACTTGTGCGAAGCTCGTCTTGGC
GTGCGTGAGACACAGCTCCTGGCGAAGCTGGAGGGGAAGGGAGCTGCGGC
GGCGGCATTACGATCGCCAGCGATTAACAGCAGCAACAACAACAACAACA
ACAACAACGGCGACGACGGCAGTGTTTCTGGTATTAACGCCACGGTCAAT
GACGCAGCCATCCTTCGGCGGAGACAGGCACAGCTCCAAGGCACTTGTGC
GAAGCTCGTCTTGGCGTGCGTGAGACACAGGTATTGGGAGCTGCACCAGT
CCGCCGCGGACAACGCCAGCGTCGTAATTCTGAGATTCGTATTGGGAGCT
GCACCAGTCCGCCGCGGACAACGCCAGCGTCGTAATTCTGAGATTC
back to top