mRNA_L-elsbetiae_contig5976.14474.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5976.14474.1
Unique NamemRNA_L-elsbetiae_contig5976.14474.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5976.14474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5976contigL-elsbetiae_contig5976:8085..11800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1704
Cds size876
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.8188758-CDS-L-elsbetiae_contig5976:8084..84171622816647.8188758-CDS-L-elsbetiae_contig5976:8084..8417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5976 8085..8417 -
1691683710.5401614-CDS-L-elsbetiae_contig5976:8084..84171691683710.5401614-CDS-L-elsbetiae_contig5976:8084..8417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5976 8085..8417 -
1622816647.8349578-CDS-L-elsbetiae_contig5976:8701..88471622816647.8349578-CDS-L-elsbetiae_contig5976:8701..8847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5976 8702..8847 -
1691683710.552556-CDS-L-elsbetiae_contig5976:8701..88471691683710.552556-CDS-L-elsbetiae_contig5976:8701..8847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5976 8702..8847 -
1622816647.847957-CDS-L-elsbetiae_contig5976:9144..92031622816647.847957-CDS-L-elsbetiae_contig5976:9144..9203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5976 9145..9203 -
1691683710.5626893-CDS-L-elsbetiae_contig5976:9144..92031691683710.5626893-CDS-L-elsbetiae_contig5976:9144..9203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5976 9145..9203 -
1622816647.859824-CDS-L-elsbetiae_contig5976:9533..96401622816647.859824-CDS-L-elsbetiae_contig5976:9533..9640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5976 9534..9640 -
1691683710.5764658-CDS-L-elsbetiae_contig5976:9533..96401691683710.5764658-CDS-L-elsbetiae_contig5976:9533..9640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5976 9534..9640 -
1622816647.8731275-CDS-L-elsbetiae_contig5976:10519..107501622816647.8731275-CDS-L-elsbetiae_contig5976:10519..10750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5976 10520..10750 -
1691683710.5930898-CDS-L-elsbetiae_contig5976:10519..107501691683710.5930898-CDS-L-elsbetiae_contig5976:10519..10750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5976 10520..10750 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.8844798-UTR-L-elsbetiae_contig5976:10750..107771622816647.8844798-UTR-L-elsbetiae_contig5976:10750..10777Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5976 10751..10777 -
1691683710.6080143-UTR-L-elsbetiae_contig5976:10750..107771691683710.6080143-UTR-L-elsbetiae_contig5976:10750..10777Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5976 10751..10777 -
1622816647.8954425-UTR-L-elsbetiae_contig5976:11001..118001622816647.8954425-UTR-L-elsbetiae_contig5976:11001..11800Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5976 11002..11800 -
1691683710.6180563-UTR-L-elsbetiae_contig5976:11001..118001691683710.6180563-UTR-L-elsbetiae_contig5976:11001..11800Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5976 11002..11800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5976.14474.1prot_L-elsbetiae_contig5976.14474.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5976 8085..10750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5976.14474.1

>prot_L-elsbetiae_contig5976.14474.1 ID=prot_L-elsbetiae_contig5976.14474.1|Name=mRNA_L-elsbetiae_contig5976.14474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=292bp
MVRSGAVPTPAPAAAMAPDSSPVATPVGGTPSVVPLSPIACFPEYTDTYT
FDDEDGEDEYYSAQAAEKAEEADAHIETKNGADPLFHKKAYVLHVRDQPD
PKGNQFSVSGFIQPPLHYPMHRMIEVKGEFVRDCRGNYPARCEMVPGRIL
EGAVTPSQQRIDTMITTFVQDMDGMGAGGMVRTSVKRAAGRRAATSVNFS
SKAEVDARPAWALFDLANDTDGGDEDRKGPPSFASSDDESTSDDEEDEDD
RTSEDDEDGGGGSVGGDGDGDGDDRTSSGDNDDDSGDNNDKN
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mRNA from alignment at L-elsbetiae_contig5976:8085..11800-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5976.14474.1 ID=mRNA_L-elsbetiae_contig5976.14474.1|Name=mRNA_L-elsbetiae_contig5976.14474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3716bp|location=Sequence derived from alignment at L-elsbetiae_contig5976:8085..11800- (Laminarionema elsbetiae ELsaHSoW15)
TGCAACTCTTTGGTAAACCCAAAACGATCGTGGGGGGCACTTTTTACTCC
CTAGACTGTATAGGACTCTACGCTTGTCGGCCGACAAGCTTTCAACTAGG
GGTACCCCCTCTATCGTGGCATTGGTCCCATCTGCAACAATGAAGTTTGA
GTTCTACTTCTCGGTGCCATCGCTGTTCAAGGAAGACCCAACCCTGGCCA
CGGTAAGCCGCACCGAAGCCACCGTTTGTTGGCGCAACTAGATATCAGAG
TAACAAATCCACTAGGCACTGTGAATGGACGTTAGCAGTATCCACCCTGA
TGGGACATGAGGTTGGCAAGGAAGCATTACGATTCATAGGACTAAAAGAA
GGGTGTTCGAGTGACCGTTGACCGCGCATCCACGGGACCCCTTTTGGACG
GGGCAAGAAGCCTGAAAGGAGAAGGGCGCCGTTTACTTCGGGAGCACAGA
CATGTCGTGGGATGGTTAAACACCTCGTGTTCTTGTTCGCGCAATCTACA
CCCGTCTACACCTCCTCGAAACTGCGTTGATTCTGATGTGATGCAGAGTA
TGGACGTGCAGTTTTTGGCGCTGGTTCCCACGGAGGGCTCGGGCGGAAAC
TGGCTCGTCGATATCTACAACAGGGCAGATGACCAAAGGCTGGGAGGCGA
TCGGTGATTTTTCGACCGTACTTTCCAATTGGTCGCCCCTTTATTCGACC
GTCGCGGAAACGCCTTTGACCAACTAAATTGATCTTGAAACCTCCTCCGA
CATCCTTGTCCGGGTCTACACCAACACCAGCTTCACGCACACTACACAGG
TATGGGACGCCTCCTATGCCGATCGGGTTTGTCGGTTACGGTGGAAATAC
AGGATGCGCTGTGCGAAGAGGAACTATGATCCATCCAAAACAGGAGCTCT
GCTGGGGATTGGTAGTGCAGTGTCGCTTCGCCCGACTATAAATTTCCAAG
CTCTCGCATGCGAAAGATGAGTTAACCCCACTTTGCCCATCCTGTTGCCC
TGAACAACTGGATACATACGCAGCTGGGCTACATTGACTTCACGCAACTC
ATGGTTCGCAGTGGTGCTGTTCCAACACCAGCCCCTGCTGCTGCGATGGC
GCCCGACTCTTCTCCTGTGGCCACGCCAGTAGGCGGGACCCCTAGTGTTG
TCCCCCTCTCCCCCATTGCGTGTTTCCCCGAATACACCGATACTTACACT
TTCGACGACGAAGACGGCGAGGACGAATATTACTCCGCACAAGCCGCAGA
AAAAGCTGAGGAAGCAGACGCACATATCGAGGTGTGTGGGAGTGGGTGGC
ATACGGATCATATGTCTTTGCCACCGGCCGGCGGGACGGGATGTCCCTGG
TGGTATAGACTGCGACGCCTAGACTCCTTTTTGTGGCTGGCAAAGCACGC
ATGAAGAGGCTGCTTACCCCAGCATCTAGGCGAGCCCCGACACTATCTGA
TATATGGATTCACTTCCATGGAAGTCATATATATGACTTCCATGGAAGTC
AATATAGAATATGGGAAAGGTCACTTCCATGGAAGTCGATTTCGCCGCTT
CCTTGGAAAGTGACATTTATAGATCAATTCCATGGAAGTGACCTCAAGTG
GTCGCTTCCATGGAAGTGAATTCACTTCCATGGAAGTGAGCCAATCGTCA
TTTCCATGGAAGTGAACCAAGCGTCACTTCCACGGAAGTGCATGCACCTC
CATGGAAGTGACGCTTGTAAGTGGGGACCTCACTTCCATGGAAGTGATTC
AAGCATCACTTCCATGGAAGTGCATTGCAAGTGACGCTTGGTTTTTGCAC
TACCATGGAAGTGACGCTTGAGTCACTTCCATGGTAGTGAGGTCCTCACT
TACAAGCGTCACTTCCATGCGAGTCAGTAATGCAGTACTGACTTCCAGAA
TGCACAAACTCCCATTAAAGCAGGGAAAGCGTACCTTTGTTGAAAACGCC
TTCACACCCTGTTTTGGAGACAGAGGGGTGACGGGGATGTAGAAGTAAGT
AAAGCATTCCCATGAGAGAGTACAGGGGCGTTTATCGGTAGGAGACTCTG
TGTATAGACTTGAGCTTCCCTGTAAGTAGCGTGCTGTCCATCGATTGGAC
GTGTCTGTGTGAAAACTAACCTTCAATTTCGCGTCTTCTCTCTGTTTGAC
TGCTACACAGACCAAGAATGGAGCGGACCCTTTATTCCACAAAAAAGCGT
ACGTGCTGCATGTTCGGGACCAGCCAGACCCGAAAGGCAACCAGTTTAGC
GTCTCCGGCTTCATACAGTAAGTAAAACCCGTTGTATTTTGTTACACGTG
CACATCAATCGGCTGTACCATAGCCTGCATGTAGCTCATTCACTTGTACC
GAGGTCGAAGTCAGCTTGCCGCTGGTAGGAGTGCCTCTATTTGTGTCAGG
CTTTCGGGACGAGGTCGCTTGCCGCTGGTAGGGGTGCCTCTATTGGTTTG
TACCTGTTGTTGCTCTCCAAGGGGCCTAACCGAGTGAATGACACACGACG
GCATTGTTGTCCAAGCGACAAAGCCTATTCATCGCCGACACCTCCCGCTC
ATTTGCTTCCGTTCGCTGCTACAAACGTCCGTCGTCGTTGAACAAAGGCC
CCCCTTACACTATCCCATGCATCGGATGATCGAAGTCAAAGGCGAGTTTG
TCAGAGGTGAGCATGCAGCCCTATTTCACTACCCTATAGCAGTGTGATCG
TCGCAAGAGACAGGTTGTGGTGTCACCCAATTGGAAGCCGCAACCCTTTC
GGACAAGTATGTCTGGGTTTGCGTTGTCCTGGCACATATGCAGTTTGTGC
GCTCCTTCTCCCATAACGAGAGGGCCTGCATCCACAGGACCGTGCTTTGC
ATACATGTACATCCCATGTGTGTCGCGCTTTCATACCTGACCCAACATGT
GTGCTTTGCTCTTTTCGTCTGTCTTCCTCTCTCTTCCAATCGCGCCCACA
AAGACTGCCGTGGCAACTACCCAGCACGATGCGAAATGGTTCCGGGCAGG
ATCCTCGAAGGTGCCGTCACCCCGAGTCAGCAGAGGATCGACACCATGAT
AACTACCTTCGTCCAAGATATGGACGGCATGGGCGCGGGTGGAATGGTGG
TGAGTGCTAATACGCGTAGACGGGACGCAGCGGCGCCACTGAGGCATCCA
CTCATATTCCGACGAAGCACCGTGTAGCCAGCCCTGGCATGTCGCGTGCA
GCATTGCGTCTGTGTTTGTCTCCAAGGGCTTTCAGCACCCACCAAACGTA
AAACCCCCCGGGGGCAGCTTCGCTACGGCGTATGCATCAGGTCCGGGAGG
TACTACCCATTTCGCTACACGTTTTGTAACCATATCGTATTTTTCGTTTT
CCATTACGCCCATCCAACATGTTCTGTACGCAGCGAACAAGCGTCAAGCG
GGCAGCCGGCAGGAGGGCCGCCACCTCCGTCAACTTCAGTTCCAAGGCGG
AAGTTGACGCCCGGCCAGCCTGGGCGTTGTTCGATCTCGCAAATGATACA
GATGGAGGTGACGAAGACAGAAAAGGACCCCCCTCCTTCGCCTCCAGCGA
CGACGAAAGCACCAGCGACGACGAAGAAGACGAAGACGACCGCACCAGCG
AGGATGACGAGGACGGCGGCGGTGGCAGCGTCGGCGGCGACGGCGACGGC
GACGGGGACGACAGGACCAGCAGCGGCGACAATGACGACGACAGCGGCGA
CAACAACGACAAGAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5976:8085..11800-

>mRNA_L-elsbetiae_contig5976.14474.1 ID=mRNA_L-elsbetiae_contig5976.14474.1|Name=mRNA_L-elsbetiae_contig5976.14474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1752bp|location=Sequence derived from alignment at L-elsbetiae_contig5976:8085..11800- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTCGCAGTGGTGCTGTTCCAACACCAGCCCCTGCTGCTGCGATGGC
GCCCGACTCTTCTCCTGTGGCCACGCCAGTAGGCGGGACCCCTAGTGTTG
TCCCCCTCTCCCCCATTGCGTGTTTCCCCGAATACACCGATACTTACACT
TTCGACGACGAAGACGGCGAGGACGAATATTACTCCGCACAAGCCGCAGA
AAAAGCTGAGGAAGCAGACGCACATATCGAGATGGTTCGCAGTGGTGCTG
TTCCAACACCAGCCCCTGCTGCTGCGATGGCGCCCGACTCTTCTCCTGTG
GCCACGCCAGTAGGCGGGACCCCTAGTGTTGTCCCCCTCTCCCCCATTGC
GTGTTTCCCCGAATACACCGATACTTACACTTTCGACGACGAAGACGGCG
AGGACGAATATTACTCCGCACAAGCCGCAGAAAAAGCTGAGGAAGCAGAC
GCACATATCGAGACCAAGAATGGAGCGGACCCTTTATTCCACAAAAAAGC
GTACGTGCTGCATGTTCGGGACCAGCCAGACCCGAAAGGCAACCAGTTTA
GCGTCTCCGGCTTCATACAACCAAGAATGGAGCGGACCCTTTATTCCACA
AAAAAGCGTACGTGCTGCATGTTCGGGACCAGCCAGACCCGAAAGGCAAC
CAGTTTAGCGTCTCCGGCTTCATACAGCCCCCCTTACACTATCCCATGCA
TCGGATGATCGAAGTCAAAGGCGAGTTTGTCAGAGGCCCCCCTTACACTA
TCCCATGCATCGGATGATCGAAGTCAAAGGCGAGTTTGTCAGAGACTGCC
GTGGCAACTACCCAGCACGATGCGAAATGGTTCCGGGCAGGATCCTCGAA
GGTGCCGTCACCCCGAGTCAGCAGAGGATCGACACCATGATAACTACCTT
CGTCCAAGATATGGACGGCATGGGCGCGGGTGGAATGGTGACTGCCGTGG
CAACTACCCAGCACGATGCGAAATGGTTCCGGGCAGGATCCTCGAAGGTG
CCGTCACCCCGAGTCAGCAGAGGATCGACACCATGATAACTACCTTCGTC
CAAGATATGGACGGCATGGGCGCGGGTGGAATGGTGCGAACAAGCGTCAA
GCGGGCAGCCGGCAGGAGGGCCGCCACCTCCGTCAACTTCAGTTCCAAGG
CGGAAGTTGACGCCCGGCCAGCCTGGGCGTTGTTCGATCTCGCAAATGAT
ACAGATGGAGGTGACGAAGACAGAAAAGGACCCCCCTCCTTCGCCTCCAG
CGACGACGAAAGCACCAGCGACGACGAAGAAGACGAAGACGACCGCACCA
GCGAGGATGACGAGGACGGCGGCGGTGGCAGCGTCGGCGGCGACGGCGAC
GGCGACGGGGACGACAGGACCAGCAGCGGCGACAATGACGACGACAGCGG
CGACAACAACGACAAGAATCGAACAAGCGTCAAGCGGGCAGCCGGCAGGA
GGGCCGCCACCTCCGTCAACTTCAGTTCCAAGGCGGAAGTTGACGCCCGG
CCAGCCTGGGCGTTGTTCGATCTCGCAAATGATACAGATGGAGGTGACGA
AGACAGAAAAGGACCCCCCTCCTTCGCCTCCAGCGACGACGAAAGCACCA
GCGACGACGAAGAAGACGAAGACGACCGCACCAGCGAGGATGACGAGGAC
GGCGGCGGTGGCAGCGTCGGCGGCGACGGCGACGGCGACGGGGACGACAG
GACCAGCAGCGGCGACAATGACGACGACAGCGGCGACAACAACGACAAGA
AT
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