mRNA_L-elsbetiae_contig5973.14469.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5973.14469.1
Unique NamemRNA_L-elsbetiae_contig5973.14469.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5973.14469.1 vs. uniprot
Match: A0A6H5JN32_9PHAE (DUF4460 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN32_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 5.210e-24
Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  270 MLPLIKLVHPDMFAQHPPDVASTNSKSLKDLNTLIDAAEALEAVAAGTKPANGS--VRSPAAPPKLDALYTLVFYHHQTCPPRSSDS 524
            M+PLIKLVHPDMF Q+PPDVASTNSKSLKDLNTLIDAAEAL       KPANGS  VRSPA PP +   Y+L F+H +  P  SSD+
Sbjct:    1 MMPLIKLVHPDMFGQYPPDVASTNSKSLKDLNTLIDAAEALXXXXXXAKPANGSGSVRSPAPPPTVAPFYSLTFFHLKQNP-ASSDN 86
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BLAST of mRNA_L-elsbetiae_contig5973.14469.1 vs. uniprot
Match: D7G1D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 5.120e-13
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 3 
Query:  108 MRAFLASSRTRGKVSLPKHGLSACGGGGGGCRSS-----EVQRALSSAARAGGV--SVRKRMLPLIKLVHPDMFAQHPPDVASTNSKSLK 356
            MRA L  +R +G  SLP +G   C  G   C+ +      +    +S A +GGV  SVRKRM+PLIKLVHPDMF Q+PPDVASTNSKSLK
Sbjct:    1 MRAVLMRTR-KGAPSLPSNGCR-CSRGRNACKDTPELLLRLPALSTSTAASGGVGISVRKRMMPLIKLVHPDMFGQYPPDVASTNSKSLK 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5973.14469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN32_9PHAE5.210e-2467.82DUF4460 domain-containing protein n=1 Tax=Ectocarp... [more]
D7G1D8_ECTSI5.120e-1354.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5973contigL-elsbetiae_contig5973:2967..4553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size551
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5973.14469.1prot_L-elsbetiae_contig5973.14469.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5973 3074..4553 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.430831-UTR-L-elsbetiae_contig5973:2966..30731622816647.430831-UTR-L-elsbetiae_contig5973:2966..3073Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5973 2967..3073 +
1691683710.2527835-UTR-L-elsbetiae_contig5973:2966..30731691683710.2527835-UTR-L-elsbetiae_contig5973:2966..3073Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5973 2967..3073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.4421926-CDS-L-elsbetiae_contig5973:3073..33221622816647.4421926-CDS-L-elsbetiae_contig5973:3073..3322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5973 3074..3322 +
1691683710.2674994-CDS-L-elsbetiae_contig5973:3073..33221691683710.2674994-CDS-L-elsbetiae_contig5973:3073..3322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5973 3074..3322 +
1622816647.455048-CDS-L-elsbetiae_contig5973:4358..45531622816647.455048-CDS-L-elsbetiae_contig5973:4358..4553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5973 4359..4553 +
1691683710.2789474-CDS-L-elsbetiae_contig5973:4358..45531691683710.2789474-CDS-L-elsbetiae_contig5973:4358..4553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5973 4359..4553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5973.14469.1

>prot_L-elsbetiae_contig5973.14469.1 ID=prot_L-elsbetiae_contig5973.14469.1|Name=mRNA_L-elsbetiae_contig5973.14469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MRAFLASSRTRGKVSLPKHGLSACGGGGGGCRSSEVQRALSSAARAGGVS
VRKRMLPLIKLVHPDMFAQHPPDVASTNSKSLKDLNTLIDAAEALEAVAA
GTKPANGSVRSPAAPPKLDALYTLVFYHHQTCPPRSSDSSGRGRDSAG
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mRNA from alignment at L-elsbetiae_contig5973:2967..4553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5973.14469.1 ID=mRNA_L-elsbetiae_contig5973.14469.1|Name=mRNA_L-elsbetiae_contig5973.14469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1587bp|location=Sequence derived from alignment at L-elsbetiae_contig5973:2967..4553+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTGTAGTTTGTTTGGGTCGTCAGCTAAACAATCCCCTCCTCTATTCCG
CCGCGCGCGTGCTCACAGCGGTGCTCACGTGCTCACACTCCCCACAAACC
CAAAGAGATGAGAGCCTTTCTCGCAAGCAGCCGAACCAGGGGGAAAGTGT
CACTCCCTAAACATGGCCTCTCCGCCTGCGGCGGAGGCGGAGGCGGCTGC
CGCTCTAGCGAGGTCCAACGAGCGTTGTCTTCCGCCGCAAGAGCGGGCGG
GGTGAGCGTGCGGAAAAGAATGCTGCCGCTGATCAAGCTCGTCCACCCCG
ACATGTTCGCGCAGCACCCTCCCGATGTGGCTAGTACTAATTCGAAGTCC
TTGAAGGTATGTTGTGTGTGTTTTCGGCTGGTGTTTGATACGTGAGCGCT
TTGTCTCGGCTCAAGGGGGGGCAGCGTGAAGTTCTCATCATGTATTGGAG
TTTGGTGCTGGCTCTATGAACTACGCTGTACAAGTAGCACTGGCTCTCGA
TCGTGTTCGGCCATCTGGTGGTGCTGCTGCTGCCGTTCAAGCGGTATGTT
TCGGCCGAACTCTACGTAAGTTGCAAGGTTGGTCTATGTTTGCGCTCCAG
TAGCGGGGCTACACACAGCGGTCGGGATTGTGCTGTCGCTCGGAAAGAAG
TGCACACACGGCCGGTGTATGGAGCGGGCCGGCAACAATCTACATAGTGT
TGGCCCCATAGTGTTGGCGCTTCCGGCCCATCAAATCGTCGGTGCCCCTC
TGGGTATCGCTTGAGCCACAGTAATTGCGCTGTGGTACACCTTTGGACTG
TTCTGTAGTCCTGGGGCTCCAGACGTTAAACATAAACGAGTGAAGTCACA
AATGGAACCTACAGCAGTAGGTAGCCCACATTCAACGTTTCTTTATTTCA
AGTCTAGAATACGTACATGCTTACATACCGTAGGTGGCACAAGATACCAC
CCACCCCTGGACCGACTTTTAGAGCTCCATTGCTCCGAAACGAAGAGGGG
GCCAGCACCAAACGACCCATTTTCGGACAGCCCTCGACTAGACCTTTCCA
ACGCCACCCCTTTCGGCAGTGGCGCTCTTTTTGCTGGGGAGGAATCGAGT
TTTGAAAATCTGTCCATGGCATGTGGTATCTTGTGTCACCTATGGTTTTT
GTGTACTGCTGTTGGCACAGACCATGAACGCGATAAGCTTGCTGCCGTAC
ATGCAATAAACACGCAGCGCATGTGCGCGCGCACACCAGAGCTGCAAGCA
TCAAAATACGGAGGTACACGTAATTACGTACATACCATGAGCTACGTTTC
CAGATCCCGCCCGGGCTTCTCTCTTTTCTGGACGTGCACCCACCGCCACA
CACATTTATTTTTACATCCATGTTTTCGAACCTCTTCGGCAGGACCTGAA
CACGCTCATCGATGCCGCGGAGGCCCTGGAGGCGGTCGCCGCGGGCACGA
AGCCGGCGAACGGGAGCGTCCGGTCGCCGGCGGCGCCCCCCAAGTTGGAC
GCTCTCTACACCTTGGTGTTTTACCACCACCAGACCTGTCCCCCGCGCTC
CTCAGACAGCAGCGGCAGGGGCAGAGACAGCGCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5973:2967..4553+

>mRNA_L-elsbetiae_contig5973.14469.1 ID=mRNA_L-elsbetiae_contig5973.14469.1|Name=mRNA_L-elsbetiae_contig5973.14469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig5973:2967..4553+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGCCTTTCTCGCAAGCAGCCGAACCAGGGGGAAAGTGTCACTCCC
TAAACATGGCCTCTCCGCCTGCGGCGGAGGCGGAGGCGGCTGCCGCTCTA
GCGAGGTCCAACGAGCGTTGTCTTCCGCCGCAAGAGCGGGCGGGGTGAGC
GTGCGGAAAAGAATGCTGCCGCTGATCAAGCTCGTCCACCCCGACATGTT
CGCGCAGCACCCTCCCGATGTGGCTAGTACTAATTCGAAGTCCTTGAAGA
TGAGAGCCTTTCTCGCAAGCAGCCGAACCAGGGGGAAAGTGTCACTCCCT
AAACATGGCCTCTCCGCCTGCGGCGGAGGCGGAGGCGGCTGCCGCTCTAG
CGAGGTCCAACGAGCGTTGTCTTCCGCCGCAAGAGCGGGCGGGGTGAGCG
TGCGGAAAAGAATGCTGCCGCTGATCAAGCTCGTCCACCCCGACATGTTC
GCGCAGCACCCTCCCGATGTGGCTAGTACTAATTCGAAGTCCTTGAAGGA
CCTGAACACGCTCATCGATGCCGCGGAGGCCCTGGAGGCGGTCGCCGCGG
GCACGAAGCCGGCGAACGGGAGCGTCCGGTCGCCGGCGGCGCCCCCCAAG
TTGGACGCTCTCTACACCTTGGTGTTTTACCACCACCAGACCTGTCCCCC
GCGCTCCTCAGACAGCAGCGGCAGGGGCAGAGACAGCGCCGGCGACCTGA
ACACGCTCATCGATGCCGCGGAGGCCCTGGAGGCGGTCGCCGCGGGCACG
AAGCCGGCGAACGGGAGCGTCCGGTCGCCGGCGGCGCCCCCCAAGTTGGA
CGCTCTCTACACCTTGGTGTTTTACCACCACCAGACCTGTCCCCCGCGCT
CCTCAGACAGCAGCGGCAGGGGCAGAGACAGCGCCGGC
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