mRNA_L-elsbetiae_contig5967.14464.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5967.14464.1
Unique NamemRNA_L-elsbetiae_contig5967.14464.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5967.14464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5967contigL-elsbetiae_contig5967:2944..5532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_005910.1
Exons3
Model size1095
Cds size1092
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5967.14464.1prot_L-elsbetiae_contig5967.14464.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5967 2946..5532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.7572422-CDS-L-elsbetiae_contig5967:2945..34681622816646.7572422-CDS-L-elsbetiae_contig5967:2945..3468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5967 2946..3468 -
1691683709.723867-CDS-L-elsbetiae_contig5967:2945..34681691683709.723867-CDS-L-elsbetiae_contig5967:2945..3468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5967 2946..3468 -
1622816646.7701657-CDS-L-elsbetiae_contig5967:3970..43831622816646.7701657-CDS-L-elsbetiae_contig5967:3970..4383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5967 3971..4383 -
1691683709.7334738-CDS-L-elsbetiae_contig5967:3970..43831691683709.7334738-CDS-L-elsbetiae_contig5967:3970..4383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5967 3971..4383 -
1622816646.7807214-CDS-L-elsbetiae_contig5967:5376..55321622816646.7807214-CDS-L-elsbetiae_contig5967:5376..5532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5967 5377..5532 -
1691683709.7452686-CDS-L-elsbetiae_contig5967:5376..55321691683709.7452686-CDS-L-elsbetiae_contig5967:5376..5532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5967 5377..5532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5967.14464.1

>prot_L-elsbetiae_contig5967.14464.1 ID=prot_L-elsbetiae_contig5967.14464.1|Name=mRNA_L-elsbetiae_contig5967.14464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=364bp
SGPKTSNAGWYSGWSGMKTLKAKDLVSTNTKLRKHVFSLTPKGKELAGRM
VKERSDDFGAFINNNSGSSNSSSNSNGNGSTNSNSRSSSNPFPPPPRRTG
AAGAASTASSGGSSVGRPPSSKKSGVPPVQNPYAAAAAASRSKTAAVHAF
AAEARRSEDSNGSKAKAAAAAAISPVGASGTKRGRSMQGRGAEKKAKSND
TGGVGSPLLAGLQPCAGEEAGRSGVADGLVGLNDEMMTLTSLPAPVRPAL
TPSSPSPRRGGATGNPRKAVPGPTPGSKARASGGGGSGVPSWTAASCAKP
RPAAVSVGGGDKSRRGEPTRGSGSNSSSNRSSNSGGGAAWAAVTPAVVVE
GVVDISLSDDDEDE
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mRNA from alignment at L-elsbetiae_contig5967:2944..5532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5967.14464.1 ID=mRNA_L-elsbetiae_contig5967.14464.1|Name=mRNA_L-elsbetiae_contig5967.14464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2589bp|location=Sequence derived from alignment at L-elsbetiae_contig5967:2944..5532- (Laminarionema elsbetiae ELsaHSoW15)
TCCGGACCGAAAACATCGAATGCAGGCTGGTATAGCGGCTGGAGTGGCAT
GAAAACTCTGAAAGCCAAAGATCTCGTCTCCACAAACACGAAACTCCGGA
AGCACGTGTTCAGTCTCACGCCCAAGGGGAAGGAACTAGCGGGCCGCATG
GTGAAGGTACTGTCTGCCGGGCCCCCAAGTATTTTTTTTTTCTTCTTCTT
TTTCTCGCGACATTTGTTCTGTCCGCGCGGCTTGTTCGCGGTATTTTCGT
GTGTTGATCTCGTCTTTGATTTCGTCGTTTTCCTCCGGGATCTACACAGG
TATGTACCTACGTAGTGTGTACATAGCTCACGTGTCGGCACAACTTCCAA
TTTTTTTTAAATAATTCAAAGGATCAAAGATGGAACCTAACCCATACTAG
AGCAAAGACTCGATATGGTTTTCTTTTGTTTCCCCTCCCATTATTGGCAT
ACTCGTCGTCTTCCTCACTGGCCCCCATGCCCCACTACGACTCGCTAGAC
GACCTTACCGGGGTCACACAGAAGGGGGGGGCGGTGGACCCCCTCCTGCG
GTGCCTGCCTTAGATGTTTTTATGGCGAGCAGGGTTCAGCATTCGCCACC
CTCGTCAGCAATAAGGTTGAAGTATTGTTTACAGAAGTAAATACGTAGCC
ATCGGGAATAAGCGGAATAATTTTTACACGCTCACGAAAACTAAAAACCA
CGGGCGATAAAGACAGAGTTTTGTCTACGCCAGCAACGCGCATCAGAGAA
AAATCGGCACGGCTGCTCCCCAAACTTGGCTTCGAGACAGTCACACCAAT
GGAGCACACATCCCTCTTGGTTAGGCTGCAAAAACGGGTCTCTGTGAGGC
AGGAACTGAGCAAAAAAGAGCGATTCCCAGCCCAAAAAGCTACATGTGCG
TGCCCCCAGCCGAATTGGATATTGATAAATTCCAAAACCCTCCCATAGCA
ATCGTCCTAATGTGTGTAGTCCTACGCGCGTAATTTTACTCCGCAGCAAG
TCGGCGCTTTCCTAGCCAAGGTCAGCATGCTCAGGACATGTTTGGTATGC
GCGCGCTGGCTCAAGTATCTATATACATATAGAAGTACATATGTATGTTG
TGTAGTGCGAATAATATTTGCTCTTTCCCCTCCCCGCCGATGAATACAGG
AGCGCAGCGATGACTTTGGCGCGTTCATCAACAACAACAGCGGCAGCAGT
AACAGCAGCAGCAACAGCAACGGCAACGGTAGCACCAACAGCAACAGCCG
GTCTTCTTCTAACCCGTTCCCCCCTCCTCCCCGGCGTACCGGGGCAGCGG
GAGCGGCGAGCACGGCTTCCTCCGGCGGTTCTTCCGTCGGCAGGCCTCCC
AGCAGCAAGAAGAGTGGCGTGCCGCCTGTGCAAAACCCCTACGCGGCGGC
GGCGGCGGCATCGAGGAGCAAGACCGCGGCCGTACACGCTTTCGCGGCGG
AGGCGAGACGGTCGGAGGATAGTAATGGCTCCAAGGCGAAGGCGGCAGCA
GCGGCCGCGATTTCGCCAGTCGGGGCTTCGGGAACGAAACGAGGGCGGAG
TATGCAGGGAAGGTTTGTACGAAGTATGATATGTACGCACGTACATGCGT
CCCGGGGGGTTTCTGTCCGGAAGGGGGGCTGGGATTCGAACGCGAGTTGG
TGTGGTGGGGGGGGGGGGCGAGGGGCGACGTGTGACTTCGTCCCTTTTCG
CGGTATTTGATGGGGGCGATGAGAGGGTATCATCCTGAGGTCCTTCGATG
TAGCAGATCTTGTATGTACGCGCGGGAAGGGGGGGGGGGGGGGAGAGAGA
TGTGGCATCCATGCCGAAACGCCTTGAGTGGATGTTGTCCGCATTGTTGT
TGCTTGCAGCAACTGCCATCCTTTTTTCCTCGACGGCTTTGTTATGTATT
GCGGGGCAGCTGCACAGCGAGAGTGCCTGCCACCCACCCCTGACGTCATG
GTACGCGCAAGACGCGGTGCGAAACGTTGTGGAACTTGACTCTCTCATCA
TATCGGGCCCCCTCATTTGCTGCCTCCTCCGCCGCCGCCGCTTGCTCTCT
GCACTAAAAAACAGGGGCGCAGAGAAGAAGGCCAAGTCGAACGATACCGG
GGGTGTCGGCAGCCCTCTCCTGGCCGGGCTTCAACCCTGCGCCGGAGAGG
AGGCTGGCCGCAGCGGCGTCGCGGACGGGCTCGTCGGTCTGAACGACGAG
ATGATGACGCTCACATCGCTGCCGGCACCGGTTCGGCCGGCCCTGACGCC
GTCCTCACCGTCGCCGAGGCGCGGCGGCGCCACTGGCAACCCCCGCAAGG
CGGTTCCCGGACCGACGCCGGGCTCGAAGGCGAGGGCGAGCGGCGGCGGC
GGCTCCGGTGTGCCGAGTTGGACAGCGGCGTCTTGTGCGAAGCCCCGGCC
CGCGGCGGTTTCGGTTGGAGGAGGAGATAAGAGCCGGCGAGGAGAGCCGA
CCAGGGGCAGCGGCAGTAACAGCAGCAGCAACAGGAGCAGCAACAGCGGC
GGGGGAGCGGCCTGGGCAGCGGTGACACCGGCGGTAGTGGTCGAAGGCGT
TGTGGACATCTCTCTGAGCGACGACGACGAGGACGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5967:2944..5532-

>mRNA_L-elsbetiae_contig5967.14464.1 ID=mRNA_L-elsbetiae_contig5967.14464.1|Name=mRNA_L-elsbetiae_contig5967.14464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2184bp|location=Sequence derived from alignment at L-elsbetiae_contig5967:2944..5532- (Laminarionema elsbetiae ELsaHSoW15)
TCCGGACCGAAAACATCGAATGCAGGCTGGTATAGCGGCTGGAGTGGCAT
GAAAACTCTGAAAGCCAAAGATCTCGTCTCCACAAACACGAAACTCCGGA
AGCACGTGTTCAGTCTCACGCCCAAGGGGAAGGAACTAGCGGGCCGCATG
GTGAAGTCCGGACCGAAAACATCGAATGCAGGCTGGTATAGCGGCTGGAG
TGGCATGAAAACTCTGAAAGCCAAAGATCTCGTCTCCACAAACACGAAAC
TCCGGAAGCACGTGTTCAGTCTCACGCCCAAGGGGAAGGAACTAGCGGGC
CGCATGGTGAAGGAGCGCAGCGATGACTTTGGCGCGTTCATCAACAACAA
CAGCGGCAGCAGTAACAGCAGCAGCAACAGCAACGGCAACGGTAGCACCA
ACAGCAACAGCCGGTCTTCTTCTAACCCGTTCCCCCCTCCTCCCCGGCGT
ACCGGGGCAGCGGGAGCGGCGAGCACGGCTTCCTCCGGCGGTTCTTCCGT
CGGCAGGCCTCCCAGCAGCAAGAAGAGTGGCGTGCCGCCTGTGCAAAACC
CCTACGCGGCGGCGGCGGCGGCATCGAGGAGCAAGACCGCGGCCGTACAC
GCTTTCGCGGCGGAGGCGAGACGGTCGGAGGATAGTAATGGCTCCAAGGC
GAAGGCGGCAGCAGCGGCCGCGATTTCGCCAGTCGGGGCTTCGGGAACGA
AACGAGGGCGGAGTATGCAGGGAAGGAGCGCAGCGATGACTTTGGCGCGT
TCATCAACAACAACAGCGGCAGCAGTAACAGCAGCAGCAACAGCAACGGC
AACGGTAGCACCAACAGCAACAGCCGGTCTTCTTCTAACCCGTTCCCCCC
TCCTCCCCGGCGTACCGGGGCAGCGGGAGCGGCGAGCACGGCTTCCTCCG
GCGGTTCTTCCGTCGGCAGGCCTCCCAGCAGCAAGAAGAGTGGCGTGCCG
CCTGTGCAAAACCCCTACGCGGCGGCGGCGGCGGCATCGAGGAGCAAGAC
CGCGGCCGTACACGCTTTCGCGGCGGAGGCGAGACGGTCGGAGGATAGTA
ATGGCTCCAAGGCGAAGGCGGCAGCAGCGGCCGCGATTTCGCCAGTCGGG
GCTTCGGGAACGAAACGAGGGCGGAGTATGCAGGGAAGGGGCGCAGAGAA
GAAGGCCAAGTCGAACGATACCGGGGGTGTCGGCAGCCCTCTCCTGGCCG
GGCTTCAACCCTGCGCCGGAGAGGAGGCTGGCCGCAGCGGCGTCGCGGAC
GGGCTCGTCGGTCTGAACGACGAGATGATGACGCTCACATCGCTGCCGGC
ACCGGTTCGGCCGGCCCTGACGCCGTCCTCACCGTCGCCGAGGCGCGGCG
GCGCCACTGGCAACCCCCGCAAGGCGGTTCCCGGACCGACGCCGGGCTCG
AAGGCGAGGGCGAGCGGCGGCGGCGGCTCCGGTGTGCCGAGTTGGACAGC
GGCGTCTTGTGCGAAGCCCCGGCCCGCGGCGGTTTCGGTTGGAGGAGGAG
ATAAGAGCCGGCGAGGAGAGCCGACCAGGGGCAGCGGCAGTAACAGCAGC
AGCAACAGGAGCAGCAACAGCGGCGGGGGAGCGGCCTGGGCAGCGGTGAC
ACCGGCGGTAGTGGTCGAAGGCGTTGTGGACATCTCTCTGAGCGACGACG
ACGAGGACGAGGGGCGCAGAGAAGAAGGCCAAGTCGAACGATACCGGGGG
TGTCGGCAGCCCTCTCCTGGCCGGGCTTCAACCCTGCGCCGGAGAGGAGG
CTGGCCGCAGCGGCGTCGCGGACGGGCTCGTCGGTCTGAACGACGAGATG
ATGACGCTCACATCGCTGCCGGCACCGGTTCGGCCGGCCCTGACGCCGTC
CTCACCGTCGCCGAGGCGCGGCGGCGCCACTGGCAACCCCCGCAAGGCGG
TTCCCGGACCGACGCCGGGCTCGAAGGCGAGGGCGAGCGGCGGCGGCGGC
TCCGGTGTGCCGAGTTGGACAGCGGCGTCTTGTGCGAAGCCCCGGCCCGC
GGCGGTTTCGGTTGGAGGAGGAGATAAGAGCCGGCGAGGAGAGCCGACCA
GGGGCAGCGGCAGTAACAGCAGCAGCAACAGGAGCAGCAACAGCGGCGGG
GGAGCGGCCTGGGCAGCGGTGACACCGGCGGTAGTGGTCGAAGGCGTTGT
GGACATCTCTCTGAGCGACGACGACGAGGACGAG
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