mRNA_L-elsbetiae_contig5961.14456.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5961.14456.1
Unique NamemRNA_L-elsbetiae_contig5961.14456.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5961.14456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5961contigL-elsbetiae_contig5961:11003..11824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size300
Cds size300
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5961.14456.1prot_L-elsbetiae_contig5961.14456.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5961 11003..11824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.1940563-CDS-L-elsbetiae_contig5961:11002..110741622816646.1940563-CDS-L-elsbetiae_contig5961:11002..11074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 11003..11074 -
1691683709.2914615-CDS-L-elsbetiae_contig5961:11002..110741691683709.2914615-CDS-L-elsbetiae_contig5961:11002..11074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 11003..11074 -
1622816646.2049916-CDS-L-elsbetiae_contig5961:11410..115391622816646.2049916-CDS-L-elsbetiae_contig5961:11410..11539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 11411..11539 -
1691683709.3010416-CDS-L-elsbetiae_contig5961:11410..115391691683709.3010416-CDS-L-elsbetiae_contig5961:11410..11539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 11411..11539 -
1622816646.2208104-CDS-L-elsbetiae_contig5961:11725..118241622816646.2208104-CDS-L-elsbetiae_contig5961:11725..11824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 11726..11824 -
1691683709.310089-CDS-L-elsbetiae_contig5961:11725..118241691683709.310089-CDS-L-elsbetiae_contig5961:11725..11824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 11726..11824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5961.14456.1

>prot_L-elsbetiae_contig5961.14456.1 ID=prot_L-elsbetiae_contig5961.14456.1|Name=mRNA_L-elsbetiae_contig5961.14456.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
ATEALDQARRNGGGGWETAAMTTIKRTLEDHYRDVDRSRQVYMTAKLIAL
ERPNELLVIAIDGSDQSSYSVPYFKQETKDTCKGWKLRCKLIGALVTGRL
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mRNA from alignment at L-elsbetiae_contig5961:11003..11824-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5961.14456.1 ID=mRNA_L-elsbetiae_contig5961.14456.1|Name=mRNA_L-elsbetiae_contig5961.14456.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig5961:11003..11824- (Laminarionema elsbetiae ELsaHSoW15)
GCCACCGAAGCTCTTGATCAAGCGCGACGGAATGGTGGAGGCGGCTGGGA
GACCGCCGCCATGACGACCATCAAACGCACGCTGGAAGATCATTACCGGG
TGCGTTCATCGCACCTTTTGATCTTCTTCTTCGTCGCACCCGTTCTTGTC
GAAATACTTGGTATTGTGTTAGGGTAACCCCACTCGCCCTTCTCGCACTC
ACACTCTCTCTCGCTCTCTCTAATCTTCTGCCTTCTACCTGCTTTCCGTA
ACATTTCCGCCTGTTCTGAATGTTGAATGTTTCAGGACGTCGATCGTTCT
AGACAGGTATACATGACCGCAAAGCTTATCGCGCTGGAGAGACCGAACGA
GCTCCTCGTCATCGCTATCGACGGCAGCGATCAATCCAGCTACTCTGTGC
CGTATTTCAAGCAGGTAAACACACTGTGATGTCATGGCTGCGTTGGTAGA
CACACGTGCTCATGGCTGCGTTTAGTGCTGAACGAATACATACGCAGACG
GCCACTTGAAAACACGAGACCACAGCCTACTTCATGGTACGCTCGTGGTG
ATCTTTTTGCATCGTGACGGGGGTGATCAATCTAGCTACTCCTTGCCGTA
CTTCAGGCAGGTAAACACACAGTGACCCCGTCGCTGCGTTGATTGCTGAA
CGAATACATACATACGCCGACGGCCGCTTGAAAACACGAGACCACGTCTA
CTTCCCGACACGCCCGTGTTGCTTCTTTCGCATTGCATGCCCATTCGCAG
GAGACAAAGGATACTTGCAAGGGGTGGAAACTGCGATGCAAGCTTATCGG
GGCCTTGGTCACTGGTCGTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5961:11003..11824-

>mRNA_L-elsbetiae_contig5961.14456.1 ID=mRNA_L-elsbetiae_contig5961.14456.1|Name=mRNA_L-elsbetiae_contig5961.14456.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig5961:11003..11824- (Laminarionema elsbetiae ELsaHSoW15)
GCCACCGAAGCTCTTGATCAAGCGCGACGGAATGGTGGAGGCGGCTGGGA
GACCGCCGCCATGACGACCATCAAACGCACGCTGGAAGATCATTACCGGG
CCACCGAAGCTCTTGATCAAGCGCGACGGAATGGTGGAGGCGGCTGGGAG
ACCGCCGCCATGACGACCATCAAACGCACGCTGGAAGATCATTACCGGGA
CGTCGATCGTTCTAGACAGGTATACATGACCGCAAAGCTTATCGCGCTGG
AGAGACCGAACGAGCTCCTCGTCATCGCTATCGACGGCAGCGATCAATCC
AGCTACTCTGTGCCGTATTTCAAGCAGGACGTCGATCGTTCTAGACAGGT
ATACATGACCGCAAAGCTTATCGCGCTGGAGAGACCGAACGAGCTCCTCG
TCATCGCTATCGACGGCAGCGATCAATCCAGCTACTCTGTGCCGTATTTC
AAGCAGGAGACAAAGGATACTTGCAAGGGGTGGAAACTGCGATGCAAGCT
TATCGGGGCCTTGGTCACTGGTCGTCTCGAGACAAAGGATACTTGCAAGG
GGTGGAAACTGCGATGCAAGCTTATCGGGGCCTTGGTCACTGGTCGTCTC
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