mRNA_L-elsbetiae_contig5961.14455.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5961.14455.1
Unique NamemRNA_L-elsbetiae_contig5961.14455.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5961.14455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5961contigL-elsbetiae_contig5961:9015..9847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size351
Cds size351
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5961.14455.1prot_L-elsbetiae_contig5961.14455.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5961 9015..9847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.1227834-CDS-L-elsbetiae_contig5961:9014..91391622816646.1227834-CDS-L-elsbetiae_contig5961:9014..9139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 9015..9139 -
1691683709.2499363-CDS-L-elsbetiae_contig5961:9014..91391691683709.2499363-CDS-L-elsbetiae_contig5961:9014..9139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 9015..9139 -
1622816646.1329815-CDS-L-elsbetiae_contig5961:9338..95081622816646.1329815-CDS-L-elsbetiae_contig5961:9338..9508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 9339..9508 -
1691683709.2705-CDS-L-elsbetiae_contig5961:9338..95081691683709.2705-CDS-L-elsbetiae_contig5961:9338..9508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 9339..9508 -
1622816646.1468356-CDS-L-elsbetiae_contig5961:9791..98471622816646.1468356-CDS-L-elsbetiae_contig5961:9791..9847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 9792..9847 -
1691683709.2825637-CDS-L-elsbetiae_contig5961:9791..98471691683709.2825637-CDS-L-elsbetiae_contig5961:9791..9847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5961 9792..9847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5961.14455.1

>prot_L-elsbetiae_contig5961.14455.1 ID=prot_L-elsbetiae_contig5961.14455.1|Name=mRNA_L-elsbetiae_contig5961.14455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
VKLQVQARGYENKWAAIDRAGEYHEGYMEIMRPGPMPDLRDMPDCPRKTV
DEHTMKQHRNCFAASEDRMRVILEHGDDSITCDEAMLELEAAAVDLEASS
AVPCDWDFALYKLSPLH
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mRNA from alignment at L-elsbetiae_contig5961:9015..9847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5961.14455.1 ID=mRNA_L-elsbetiae_contig5961.14455.1|Name=mRNA_L-elsbetiae_contig5961.14455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=833bp|location=Sequence derived from alignment at L-elsbetiae_contig5961:9015..9847- (Laminarionema elsbetiae ELsaHSoW15)
GTCAAACTTCAGGTGCAGGCCCGCGGGTACGAGAACAAGTGGGCTGCGAT
CGACAGGTATATCGACTCGGCGTGTATATAATTGTTTGTGGCCCTTCGAG
ATCTCGTGTGTTCGGAGGCTTTTGCTGTTGAGTTGGCACTTGCGCGGGTC
AGTTGCCACCCGATACGGACGGGGCCTGCCACTTCGTATCTAGCTGTACC
TTGTCCGTGAATTCAGGTGTAAACACATACAGTATAACATATATTGCTAG
CGCGACACACATGAATGCTTGCGATGTAAAACAGAGGGGTCGTATCTGAC
CGTATGCACTTTTGTCTCTTCTTCCTTGGCGCCGAATAGGGCCGGGGAGT
ACCACGAGGGATACATGGAAATCATGCGACCCGGACCGATGCCCGATCTC
CGTGATATGCCAGACTGCCCTCGCAAGACCGTGGACGAACACACGATGAA
GCAGCATCGTAACTGTTTCGCCGCATCAGAGGACCGCATGCGCGTCATCC
TTGAGCACGGTCAGTGTGTCTGTCTGGGAACCCTCCATCGCTTCCATGTT
TTTTTTTGTTATACGTGCTGCTCATCATGTTGCTTCCATGTTTTGTTTTG
GTTATACGTGCTGCTCATCATGTTGTCTATGTTTGCAAAGACAAATCGTA
CAATTGATGTATTTGCAGCTCACAAGACAACCTTCTATGCTGTTCCTTGT
ATATACAGGCGACGACTCCATCACGTGCGACGAGGCTATGCTCGAGCTGG
AGGCCGCGGCGGTGGACCTAGAGGCGAGCTCAGCGGTACCATGTGATTGG
GATTTCGCCTTGTACAAGCTATCTCCTCTTCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5961:9015..9847-

>mRNA_L-elsbetiae_contig5961.14455.1 ID=mRNA_L-elsbetiae_contig5961.14455.1|Name=mRNA_L-elsbetiae_contig5961.14455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig5961:9015..9847- (Laminarionema elsbetiae ELsaHSoW15)
GTCAAACTTCAGGTGCAGGCCCGCGGGTACGAGAACAAGTGGGCTGCGAT
CGACAGGTCAAACTTCAGGTGCAGGCCCGCGGGTACGAGAACAAGTGGGC
TGCGATCGACAGGGCCGGGGAGTACCACGAGGGATACATGGAAATCATGC
GACCCGGACCGATGCCCGATCTCCGTGATATGCCAGACTGCCCTCGCAAG
ACCGTGGACGAACACACGATGAAGCAGCATCGTAACTGTTTCGCCGCATC
AGAGGACCGCATGCGCGTCATCCTTGAGCACGGGCCGGGGAGTACCACGA
GGGATACATGGAAATCATGCGACCCGGACCGATGCCCGATCTCCGTGATA
TGCCAGACTGCCCTCGCAAGACCGTGGACGAACACACGATGAAGCAGCAT
CGTAACTGTTTCGCCGCATCAGAGGACCGCATGCGCGTCATCCTTGAGCA
CGGCGACGACTCCATCACGTGCGACGAGGCTATGCTCGAGCTGGAGGCCG
CGGCGGTGGACCTAGAGGCGAGCTCAGCGGTACCATGTGATTGGGATTTC
GCCTTGTACAAGCTATCTCCTCTTCACGCGACGACTCCATCACGTGCGAC
GAGGCTATGCTCGAGCTGGAGGCCGCGGCGGTGGACCTAGAGGCGAGCTC
AGCGGTACCATGTGATTGGGATTTCGCCTTGTACAAGCTATCTCCTCTTC
AC
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