mRNA_L-elsbetiae_contig5958.14448.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5958.14448.1
Unique NamemRNA_L-elsbetiae_contig5958.14448.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5958.14448.1 vs. uniprot
Match: D8LES7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES7_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 1.960e-75
Identity = 116/135 (85.93%), Postives = 124/135 (91.85%), Query Frame = 2 
Query:   29 MAAAVASSIAAGQGPAYVLCALPYRTDAEREDWGLDTALAIVEEAVEAFDPPRMQARPVRTSWPSGLQEKAKALDTFELMRSAYFTRSSNSLPDLSEPVPRIETNFYMWLSCRKQQWRKHRADKRVSRKVTPEED 433
            MAAAVA++IA+GQGPAYVLCALPYRTDAEREDWGLDTALAIVEEAVEAFDP RMQARP RTSWP  LQ+KAKALDT ELMRSAYF R S+SLPD+SEPVP+IE NFYMWLS RKQQWRKHR DKRV RK+TPEED
Sbjct:    1 MAAAVATNIASGQGPAYVLCALPYRTDAEREDWGLDTALAIVEEAVEAFDPQRMQARPARTSWPPELQDKAKALDTIELMRSAYFARGSSSLPDVSEPVPKIEDNFYMWLSLRKQQWRKHRRDKRVGRKLTPEED 135
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BLAST of mRNA_L-elsbetiae_contig5958.14448.1 vs. uniprot
Match: A0A6H5KM78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM78_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 6.840e-75
Identity = 175/219 (79.91%), Postives = 190/219 (86.76%), Query Frame = 2 
Query:   29 MAAAVASSIAAGQGPAYVLCALPYRTDAEREDWGLDTALAIVEEAVEAFDPPRMQARPVRTSWPSGLQEKAKALDTFELMRSAYFTRSSNSLPDLSEPVPRIETNFYMWLSCRKQQWRKHRADKRVSRKVTPEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARKHGLPSVPTNAGSGVGAG--SGYPDKNYQHHLQQQ 679
            MAAAVA++I +G+GPAYVLCALPYRTDAEREDWGLDTALAIVEEAVEAFDP RM+ARP RTSWP  LQ+KAKALDT ELMRSAYF R S+SLPD+SEPVP+IE NFYMWLS RKQQWRKHR DKR  RK+TPEE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ARKHG   + +N+ SG      +  PD NYQHHLQ+Q
Sbjct:    1 MAAAVATNITSGEGPAYVLCALPYRTDAEREDWGLDTALAIVEEAVEAFDPQRMKARPARTSWPPELQDKAKALDTIELMRSAYFARGSSSLPDVSEPVPKIEDNFYMWLSLRKQQWRKHRRDKRAGRKLTPEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLARKHGGRGLASNSSSGFSRDGVAELPDNNYQHHLQRQ 219
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5958.14448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LES7_ECTSI1.960e-7585.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM78_9PHAE6.840e-7579.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5958contigL-elsbetiae_contig5958:7054..9187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_005420.1
Exons3
Model size714
Cds size684
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5958.14448.1prot_L-elsbetiae_contig5958.14448.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5958 7082..9187 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816645.091631-UTR-L-elsbetiae_contig5958:7053..70811622816645.091631-UTR-L-elsbetiae_contig5958:7053..7081Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5958 7054..7081 +
1691683708.3554358-UTR-L-elsbetiae_contig5958:7053..70811691683708.3554358-UTR-L-elsbetiae_contig5958:7053..7081Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5958 7054..7081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816645.1029975-CDS-L-elsbetiae_contig5958:7081..72971622816645.1029975-CDS-L-elsbetiae_contig5958:7081..7297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5958 7082..7297 +
1691683708.3712728-CDS-L-elsbetiae_contig5958:7081..72971691683708.3712728-CDS-L-elsbetiae_contig5958:7081..7297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5958 7082..7297 +
1622816645.1162004-CDS-L-elsbetiae_contig5958:7946..81431622816645.1162004-CDS-L-elsbetiae_contig5958:7946..8143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5958 7947..8143 +
1691683708.381793-CDS-L-elsbetiae_contig5958:7946..81431691683708.381793-CDS-L-elsbetiae_contig5958:7946..8143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5958 7947..8143 +
1622816645.127178-CDS-L-elsbetiae_contig5958:8916..91871622816645.127178-CDS-L-elsbetiae_contig5958:8916..9187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5958 8917..9187 +
1691683708.397653-CDS-L-elsbetiae_contig5958:8916..91871691683708.397653-CDS-L-elsbetiae_contig5958:8916..9187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5958 8917..9187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5958.14448.1

>prot_L-elsbetiae_contig5958.14448.1 ID=prot_L-elsbetiae_contig5958.14448.1|Name=mRNA_L-elsbetiae_contig5958.14448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
MAAAVASSIAAGQGPAYVLCALPYRTDAEREDWGLDTALAIVEEAVEAFD
PPRMQARPVRTSWPSGLQEKAKALDTFELMRSAYFTRSSNSLPDLSEPVP
RIETNFYMWLSCRKQQWRKHRADKRVSRKVTPEEDFPRWLKQRKWHWKSS
KMEREYLNTPPLEEDFFAWLADRKKIWRLQRLARKHGLPSVPTNAGSGVG
AGSGYPDKNYQHHLQQQGGGAAGAAGAA
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mRNA from alignment at L-elsbetiae_contig5958:7054..9187+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5958.14448.1 ID=mRNA_L-elsbetiae_contig5958.14448.1|Name=mRNA_L-elsbetiae_contig5958.14448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2134bp|location=Sequence derived from alignment at L-elsbetiae_contig5958:7054..9187+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGGTAGGGACGACTACACCACCCAAAATGGCGGCAGCTGTAGCATCAA
GTATAGCTGCCGGCCAAGGCCCGGCGTACGTGCTGTGCGCCCTCCCGTAC
CGCACTGACGCCGAGCGGGAGGATTGGGGGCTGGATACGGCTCTCGCCAT
CGTTGAGGAAGCGGTAGAAGCCTTCGACCCGCCGAGGATGCAGGCTAGAC
CTGTGAGGACGAGCTGGCCCTCGGGGCTGCAAGAAAAAGCCAAGGTGCGG
TTGTGGTTGTGGGCATTGTTGGCGTTGGAGGTATGTGGCGTGTCTGCTGG
AATATTGTGAAGGGTTAGTGGGAAGATGTGGGCTCGAGACTTACTACAGC
TGTAGACTAGTAGATATGTGTCTATGGACACACAGCTAGTCTAAATGCCT
GGCAGCAGGCAGCAGCAGCACACCGCTGTGTAGAGTAAGTAGTTCATAGT
GGTGGTTGAGAGCTGTTGGATATTCAGGGTGTGTGGTCGTTGTTGCCGGT
AATTTCCTGCATTCGCTGAAGGATTTGCCCTACAGTCTTTCGCTACATGA
TATTCCTGGGATGATGTTTGTTTGGAGGTTGGTGTGATCGACAGAGATTT
ATCTGCTCTGCGGCTCCTGTAGATGTTTGACTGCTGCATAGGAACGCGGG
CATCCCATACAAGGCCGTTCCCTGACTGCTGCCTAACCCCTAACCAACAT
AATTCCACGAGCATATCTATGCGGTGTAATACCCTGTCCGACCCGGCGAG
ATGAAAGTTCGGTACAACAGACTTGTCGATCCCTCGGTCCCCTGGGCCCG
GTACCTCAGCACAGCCAGAACATAACACCGCCACTCGATTTTTGACACTC
CACTTTCATGTACTTTTCCACCTCTCACATGTGTTGTGATCAGGCGCTGG
ACACGTTTGAGCTGATGCGGTCGGCCTACTTCACGCGGAGCTCCAACAGT
CTGCCCGACCTCAGCGAGCCGGTGCCCAGGATAGAGACGAACTTTTACAT
GTGGCTGTCCTGCAGGAAGCAGCAGTGGAGAAAACACAGGGCCGACAAGC
GGGTCAGCCGGAAGGTCACACCGGAGGAGGACTTCCCGAGGTTAGCATAA
TGGGATCTTTACGGAGACAAGTGCATGCTCCTACACCGGTTGCTTCGTTC
GTTTCGTTCGTCTTGGGCGGGGGGCCGGCCGGCCGGCCTCTGGGGGCCAC
GCGGCGGTGCCGTATGTAGCTCGCACACACACACACACACACACACACAC
ACACACATCCTTATGTGGCTTTCTCTTCCTGCTGTCGGGGGGGGGGGGGG
GGGGTGGTATATACAGCGGGTCCGATTTGATAACTTTTTGTCTCCGAAAT
TTTTATGGTTATTTTTATTTTTATGTTCTACACAAACTTCAACCTCCCCG
TCGACGAGGGAAAGGGACGGCTGAACCCTTCTCGCGACAAAAATCTTAGG
CAAGCACCGAAGACGGGGGGAGTGGGGGCCTTGGGGAAAGGAACCCTTCT
GTGTGATCACGGTTCAGTACTCTGGCAAGATGTCCTCGTGACAGGGAGCC
CTTCGATCACTGGAAATAAATGTGAAGAAAAAAAAAATCGACGTCCATAT
ATATATTTTTTTTTTTTCTTTTTTTTCCTGCCCATTATTGGATTTCGTCG
TCTGCCCCTCTGGCCCCCATTGTATGTACGCAAATATTTATGTCGTCAGA
AAACCTTTTATCGTGACAATTTCGATACTCCGAGAGAATACGGTAGATCC
TCCAAATTGTTGAGTGAAACAAATCCCTTTGGGCTCGCTTTCATCGCCTC
GCGCTCCCCCCCCTCCCCTGCCTCCCCGACTCGCCGTCCTCCGGCACGCG
TCCGGCGCGCCAGGTGGCTGAAGCAGCGGAAGTGGCACTGGAAGTCGAGC
AAGATGGAGCGCGAGTACCTCAACACGCCCCCGCTGGAGGAGGACTTTTT
CGCCTGGCTGGCAGATCGGAAGAAGATCTGGAGGCTGCAGAGACTTGCCC
GCAAGCACGGGCTCCCGTCCGTGCCAACGAACGCCGGCAGCGGCGTCGGG
GCTGGGTCTGGCTACCCAGACAAGAACTACCAGCACCATCTCCAACAGCA
GGGCGGAGGGGCAGCCGGGGCGGCCGGGGCGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5958:7054..9187+

>mRNA_L-elsbetiae_contig5958.14448.1 ID=mRNA_L-elsbetiae_contig5958.14448.1|Name=mRNA_L-elsbetiae_contig5958.14448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig5958:7054..9187+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCAGCTGTAGCATCAAGTATAGCTGCCGGCCAAGGCCCGGCGTA
CGTGCTGTGCGCCCTCCCGTACCGCACTGACGCCGAGCGGGAGGATTGGG
GGCTGGATACGGCTCTCGCCATCGTTGAGGAAGCGGTAGAAGCCTTCGAC
CCGCCGAGGATGCAGGCTAGACCTGTGAGGACGAGCTGGCCCTCGGGGCT
GCAAGAAAAAGCCAAGATGGCGGCAGCTGTAGCATCAAGTATAGCTGCCG
GCCAAGGCCCGGCGTACGTGCTGTGCGCCCTCCCGTACCGCACTGACGCC
GAGCGGGAGGATTGGGGGCTGGATACGGCTCTCGCCATCGTTGAGGAAGC
GGTAGAAGCCTTCGACCCGCCGAGGATGCAGGCTAGACCTGTGAGGACGA
GCTGGCCCTCGGGGCTGCAAGAAAAAGCCAAGGCGCTGGACACGTTTGAG
CTGATGCGGTCGGCCTACTTCACGCGGAGCTCCAACAGTCTGCCCGACCT
CAGCGAGCCGGTGCCCAGGATAGAGACGAACTTTTACATGTGGCTGTCCT
GCAGGAAGCAGCAGTGGAGAAAACACAGGGCCGACAAGCGGGTCAGCCGG
AAGGTCACACCGGAGGAGGACTTCCCGAGGCGCTGGACACGTTTGAGCTG
ATGCGGTCGGCCTACTTCACGCGGAGCTCCAACAGTCTGCCCGACCTCAG
CGAGCCGGTGCCCAGGATAGAGACGAACTTTTACATGTGGCTGTCCTGCA
GGAAGCAGCAGTGGAGAAAACACAGGGCCGACAAGCGGGTCAGCCGGAAG
GTCACACCGGAGGAGGACTTCCCGAGGTGGCTGAAGCAGCGGAAGTGGCA
CTGGAAGTCGAGCAAGATGGAGCGCGAGTACCTCAACACGCCCCCGCTGG
AGGAGGACTTTTTCGCCTGGCTGGCAGATCGGAAGAAGATCTGGAGGCTG
CAGAGACTTGCCCGCAAGCACGGGCTCCCGTCCGTGCCAACGAACGCCGG
CAGCGGCGTCGGGGCTGGGTCTGGCTACCCAGACAAGAACTACCAGCACC
ATCTCCAACAGCAGGGCGGAGGGGCAGCCGGGGCGGCCGGGGCGGCCGTG
GCTGAAGCAGCGGAAGTGGCACTGGAAGTCGAGCAAGATGGAGCGCGAGT
ACCTCAACACGCCCCCGCTGGAGGAGGACTTTTTCGCCTGGCTGGCAGAT
CGGAAGAAGATCTGGAGGCTGCAGAGACTTGCCCGCAAGCACGGGCTCCC
GTCCGTGCCAACGAACGCCGGCAGCGGCGTCGGGGCTGGGTCTGGCTACC
CAGACAAGAACTACCAGCACCATCTCCAACAGCAGGGCGGAGGGGCAGCC
GGGGCGGCCGGGGCGGCC
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