mRNA_L-elsbetiae_contig5956.14446.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5956.14446.1
Unique NamemRNA_L-elsbetiae_contig5956.14446.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5956.14446.1 vs. uniprot
Match: A0A6H5KUI5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI5_9PHAE)

HSP 1 Score: 629 bits (1622), Expect = 3.320e-220
Identity = 356/522 (68.20%), Postives = 387/522 (74.14%), Query Frame = 1 
Query:    1 DNEAWLVMDFVGGGSVSDILEACEVTLSEAEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTAIGTPYWMAPEVIQEVPYDGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDFIGRCLEKKPDERPSSRAILRHPWIATSVEEIQSHGGESGSAVIQGLVARHLPVLTSFREDASDAKANMGGEES-EECSGYKTATLRRMSSTRGGDSFRGNGSPGARLPGAHPEETDTSSQTPEQAGDYAEEXXXXXDGYSSDGSVVRVPIDGGQEERGAGXXXXXXXXXXXRADANECRPDGSVIRAPVASNTDEDDGCSXXXXXXXXXAGEGRVGGGVGGMPQK---------AAESGL----------EITVVERGSTGKVPGHMKLNLLAASKYFGPKGGGLEGGAGAAAEAQRDGSAQSLQTEHDNPQAKTLLDELEQLDILFANDLSRLRQTYDTKKANLQAELRRLLDSEGAA 1506
            DNEAWLVMDFVGGGSV DILEAC+VTLSE EARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQT IGTPYWMAPEVIQEVPY+GQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDF+GRCLEKKPD+RPSSRAILRHPWIA SVE IQS  GE GSAVIQ LVA HLPVL  FRE+ASDAKANM G+ES E+CSG KTATLRRMSST+GGD FR NGSP AR+PG+H +  D   + PEQ  D  ++     D  SSDGSV+RVPI GG+E                R DANE   DG V++    SN D      XXXXXXXXX  +   GG   G   K         AA+ G           +  VVE  S  + P HMK+NLLAASKYFG KGG  +GG GAA        A+  Q   DNPQ K LLDELE+LD+ FANDLSRL+ TYD  +A+LQA+LR LLDS  AA
Sbjct:   79 DNEAWLVMDFVGGGSVCDILEACQVTLSEDEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTVIGTPYWMAPEVIQEVPYNGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDFVGRCLEKKPDDRPSSRAILRHPWIAASVEAIQSCDGERGSAVIQDLVAEHLPVLKRFREEASDAKANMAGQESSEDCSGSKTATLRRMSSTKGGDVFRANGSPDARVPGSHGDGADADGRMPEQE-DECDDEDSGGDECSSDGSVIRVPIGGGEEAEEGEEDCYSSSGSVIRVDANE--DDGGVLKTAGGSNADXXXXXXXXXXXXXXXXSKAGCGGDRSGQRPKDESPPEDDPAADGGCGRRGWEGQGHDGNVVEPRSASQAPAHMKMNLLAASKYFGRKGGASDGGPGAA--------ARESQQADDNPQVKALLDELERLDVTFANDLSRLKDTYDRSRASLQAKLRHLLDSSNAA 589
[Close]
BLAST of mRNA_L-elsbetiae_contig5956.14446.1 vs. uniprot
Match: D7G917_ECTSI (Protein serine/threonine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G917_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 2.380e-128
Identity = 198/251 (78.88%), Postives = 205/251 (81.67%), Query Frame = 1 
Query:    1 DNEAWLVMDFVGGGSVSDILEACEVTLSEAEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTAIGTPYWMAPEVIQEVPYDGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDFIGRCLEKKPDERPSSRAILRHPWIATSVEEIQSHGGESGSAVIQGLVARHLPVLTSFREDASDAKANMGGEES-EECSGYKTATLRRM 750
            DNEAWLVMDFVGGGSV DILEAC+VTLSE EARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQT IGTPYWMAPEVIQEVPY+GQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDF+GRCLEKKPD+RPSSRAILR                                       +ASDAKANM G+ES E+ SG KTATLRRM
Sbjct:   41 DNEAWLVMDFVGGGSVCDILEACQVTLSEEEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTVIGTPYWMAPEVIQEVPYNGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDFVGRCLEKKPDDRPSSRAILR---------------------------------------EASDAKANMAGQESSEDGSGSKTATLRRM 252
[Close]
BLAST of mRNA_L-elsbetiae_contig5956.14446.1 vs. uniprot
Match: A0A835ZA30_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA30_9STRA)

HSP 1 Score: 287 bits (734), Expect = 2.550e-89
Identity = 137/201 (68.16%), Postives = 155/201 (77.11%), Query Frame = 1 
Query:    1 DNEAWLVMDFVGGGSVSDILEACEVTLSEAEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTAIGTPYWMAPEVIQEVPYDGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDFIGRCLEKKPDERPSSRAILRHPWIATSVEEIQSHGGES 603
            D EAWLVMD+  GGS  D+++AC++T SE E RE  AW++L L YLHSNRKLHRDVKAGN+LLT DGRAKLADFGVSKEV T+ NKAQT IGTPYWMAPEVIQEVPYDG+AD+WSL IT IEM EGNPPLH VHPMRAIFMIPSKP P L EP KW+  F+DF+ RCL K P+ER +  A  R    A S     + GG S
Sbjct:   80 DREAWLVMDYCAGGSSCDVIDACQITFSEDEVREAMAWSLLGLQYLHSNRKLHRDVKAGNVLLTGDGRAKLADFGVSKEVTTLQNKAQTVIGTPYWMAPEVIQEVPYDGRADVWSLGITAIEMAEGNPPLHKVHPMRAIFMIPSKPPPKLKEPDKWTAPFHDFLARCLVKAPEERATCDAFRR----AASAARADAGGGHS 276
[Close]
BLAST of mRNA_L-elsbetiae_contig5956.14446.1 vs. uniprot
Match: A0A7S1UKA4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKA4_9STRA)

HSP 1 Score: 273 bits (699), Expect = 8.200e-84
Identity = 132/228 (57.89%), Postives = 160/228 (70.18%), Query Frame = 1 
Query:    1 DNEAWLVMDFVGGGSVSDILEACEVTLSEAEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTAIGTPYWMAPEVIQEVPYDGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDFIGRCLEKKPDERPSSRAILRHPWIATSVEEIQSHGGES---GSAVIQGLVARHLPVLTSFREDAS 675
            +NE W+ MD   GGSVSD+L+A + TL E + R   A+TVL LD+LH  R LHRD+KAGNILL   G AKLADFG+S E+     K +T IGTP+WMAPEVIQE  YDG+AD+WSL ITCIEM EG PP  N+HPMRAIFMIP +P P LSEP KWS EFNDFI RCL K PDER SS  +L HP+IA++V  IQ   G +   G+  ++ L+ R    L  FR+ A+
Sbjct:   81 NNEVWIFMDLCEGGSVSDLLDATQATLDEDQIRVVCAYTVLGLDFLHGQRHLHRDIKAGNILLDESGCAKLADFGISAEMTNSITKRKTVIGTPFWMAPEVIQESGYDGKADVWSLGITCIEMAEGQPPYFNIHPMRAIFMIPGRPPPKLSEPKKWSTEFNDFIARCLVKVPDERASSHDLLSHPFIASTVANIQGKVGRNEPVGNTTLRDLLVRSAGALARFRDSAA 308
[Close]
BLAST of mRNA_L-elsbetiae_contig5956.14446.1 vs. uniprot
Match: A0A7S1G6G9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6G9_9STRA)

HSP 1 Score: 245 bits (626), Expect = 6.670e-74
Identity = 111/222 (50.00%), Postives = 155/222 (69.82%), Query Frame = 1 
Query:    1 DNEAWLVMDFVGGGSVSDILEACEVTLSEAEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTAIGTPYWMAPEVIQEVPYDGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDFIGRCLEKKPDERPSSRAILRHPWIATSVEEIQSHGGESGSAVIQGLVARHLPVLTSFRE 666
            DNE W+VM++ G GSV+D++  C VTL+E E  +  A  +L L YLH    +HRDVKAGN+LL+ +G AK+ADFGVS ++N   ++ +T IGTP+WMAPEVIQE  YDG+AD+WSL IT IEM EG PP  ++HPMRAIF+IP+ P P L++ AKWS    DF+  CL+K P +RP+   +L+HP++A + E +    G S   V+  LV +H+P +  +R+
Sbjct:   69 DNELWIVMEYCGAGSVNDLITICNVTLTEPEIADVCASMLLGLSYLHREHLIHRDVKAGNVLLSPEGNAKMADFGVSAQLNNTMSRRRTVIGTPFWMAPEVIQETSYDGKADVWSLGITIIEMAEGEPPNSHIHPMRAIFLIPTLPPPKLADAAKWSPHMQDFVKLCLQKDPADRPTVDELLKHPFVARNAEALVRREGVS--PVLSELVEKHMPTICDYRD 288
[Close]
BLAST of mRNA_L-elsbetiae_contig5956.14446.1 vs. uniprot
Match: A0A7S3LJ83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LJ83_9STRA)

HSP 1 Score: 241 bits (614), Expect = 4.760e-73
Identity = 111/193 (57.51%), Postives = 144/193 (74.61%), Query Frame = 1 
Query:    4 NEAWLVMDFVGGGSVSDILEACEVTLSEAEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTAIGTPYWMAPEVIQEVPYDGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDFIGRCLEKKPDERPSSRAILRHPWIATSVEEI 582
            N  W+VMD+   GSVSD++ A  +TL+E E R   A +VL L +LHS R +HRD+KAGNILLT DG AKLADFGVSK++NTM +KA TAIGTPYWMAPEVIQE  Y+ +AD+WSL IT IEM +G PP  N+HPMRA+F+IP KP PTL  P +WS E  DF+ +C+ K P ER +++ +L HP+I  + +++
Sbjct:   37 NTMWIVMDYCEAGSVSDLMNATRMTLAEDEIRVIMAASVLGLSHLHSLRMIHRDIKAGNILLTKDGTAKLADFGVSKQLNTMQSKADTAIGTPYWMAPEVIQEGAYNSKADVWSLGITLIEMADGEPPFSNMHPMRALFVIPKKPPPTLKHPQEWSAEMVDFLSKCVVKDPHERSTTQELLSHPFIKDTADDL 229
[Close]
BLAST of mRNA_L-elsbetiae_contig5956.14446.1 vs. uniprot
Match: A0A7S2RNS6_9STRA (Hypothetical protein n=3 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RNS6_9STRA)

HSP 1 Score: 244 bits (624), Expect = 8.880e-72
Identity = 121/252 (48.02%), Postives = 163/252 (64.68%), Query Frame = 1 
Query:   13 WLVMDFVGGGSVSDILEACEVTLSEAEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTAIGTPYWMAPEVIQEVPYDGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDFIGRCLEKKPDERPSSRAILRHPWIATSVEEIQSHGGESGSAVIQGLVARHLPVLTSFREDASDAKANMGGEESEECSGYKTATLRRMSSTRGG 768
            W+VM+    GSV+D++  C++  +E E R   A  +L L YLH N+ +HRDVKAGNIL+T DG  KLADFGVS ++ +  +K +T IGTP+WMAPEVI E  YDG+ADIWSL IT IEM E  PP  N+HPMRAIFMIPS+P PT  +P  WS E N+F+ RCLEK PD+RP++  ++  P+++  VEE+ S      S++++ LV  H+  +   R++ +   AN G             T  R SSTRGG
Sbjct:   89 WIVMELCIAGSVNDLIHICQIRFNEEEIRVICASVLLGLHYLHINKMIHRDVKAGNILITDDGHIKLADFGVSAQLTSNQSKRRTVIGTPFWMAPEVISESSYDGKADIWSLGITMIEMAEMEPPYSNIHPMRAIFMIPSRPPPTFEKPENWSPEMNNFLARCLEKNPDDRPTAEQLMNDPFVSDIVEELDSSYKRGYSSLLEELVCSHIGEIDVVRKEEA---ANKG-------------TKERYSSTRGG 324
[Close]
BLAST of mRNA_L-elsbetiae_contig5956.14446.1 vs. uniprot
Match: A0A6A5A656_9STRA (Protein kinase domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A656_9STRA)

HSP 1 Score: 240 bits (612), Expect = 2.690e-70
Identity = 119/244 (48.77%), Postives = 162/244 (66.39%), Query Frame = 1 
Query:    1 DNEAWLVMDFVGGGSVSDILEACEVTLSEAEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTAIGTPYWMAPEVIQEVPYDGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWSLEFNDFIGRCLEKKPDERPSSRAILRHPWIATSVEEIQSHGGESGSAVIQGLVARHLPVLTSFRE---DASDAKANMGGEESEECSG 723
            +N  W+ M+F   GSV+D++   +  L+E E     A  V  L YLH  + +HRD+KAGN+LL+  G AKLADFGVS ++    NK +T IGTP+WMAPEVIQE  YDG+ADIWSL IT IEM EG+PPL N+HPMRAIFMIPS+P PTL +P+++S +F DF+  CL+K   +RPS+ A+L HP++   V++++ H    G   +Q LV R+L  L+  RE   D +D + +     S  CSG
Sbjct:   83 ENNLWIEMEFCEAGSVADMMRVSQTCLTEKEVAGVCANIVKGLAYLHEQKNIHRDIKAGNVLLSSSGLAKLADFGVSAQLTNTINKRKTVIGTPFWMAPEVIQETQYDGKADIWSLGITAIEMAEGDPPLSNMHPMRAIFMIPSRPPPTLGDPSRFSPQFADFLAMCLKKDATQRPSAEALLAHPFVKKDVDKLE-HVLPGGLPALQELVDRNLDALSQDREGPVDMNDVQIHGVDGTSSSCSG 325
[Close]
BLAST of mRNA_L-elsbetiae_contig5956.14446.1 vs. uniprot
Match: A0A151ZSC9_9MYCE (Protein serine/threonine kinase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZSC9_9MYCE)

HSP 1 Score: 239 bits (610), Expect = 5.310e-70
Identity = 115/189 (60.85%), Postives = 142/189 (75.13%), Query Frame = 1 
Query:    1 DNEAWLVMDFVGGGSVSDILEACEVTLSEAEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTAIGTPYWMAPEVIQEVPYDGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIP--SKPSPTLSEPAKWSLEFNDFIGRCLEKKPDERPSSRAILRHPWI 561
            DNE W+VM+F G GSV D ++    TL+E +    +   +  L YLHS RK+HRD+KAGNIL+ L+G +KLADFGVS +++TMA K QT IGTP+WMAPEVIQEV YD +ADIWS  ITCIEM E  PPL NVHPMR IFMIP  S+P P LSEP KWS +FNDFI +CL +KP+ RPS+  +L+HP+I
Sbjct:   84 DNEVWIVMEFCGAGSVCDAMKITNKTLTEDQISVVSRDVLQGLAYLHSVRKIHRDIKAGNILMNLNGESKLADFGVSSQLDTMA-KRQTVIGTPFWMAPEVIQEVGYDYKADIWSFGITCIEMAESKPPLFNVHPMRVIFMIPNPSRPPPKLSEPEKWSSDFNDFIAKCLTRKPELRPSAEELLKHPFI 271
[Close]
BLAST of mRNA_L-elsbetiae_contig5956.14446.1 vs. uniprot
Match: K8YWR4_NANGC (Serine/threonine kinase 3 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWR4_NANGC)

HSP 1 Score: 244 bits (623), Expect = 8.770e-70
Identity = 119/229 (51.97%), Postives = 160/229 (69.87%), Query Frame = 1 
Query:    1 DNEAWLVMDFVGGGSVSDILEACEVTLSEAEARECTAWTVLALDYLHSNRKLHRDVKAGNILLTLDGRAKLADFGVSKEVNTMANKAQTAIGTPYWMAPEVIQEVPYDGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSE-----PAKWSLEFNDFIGRCLEKKPDERPSSRAILRHPWIATSVEEIQSHGGESGSAVIQGLVARHLPVLTSFREDA 672
            D E W++M+F  GGSV+D+L+A + TLSE + R   A   L L YLH N  +HRD+KAGNILL+++G+AKLADFGVS  +N   +K +T IGTPYWMAPEVIQE+ YDG+AD+WSL IT IEM EG PP  NVHPMRAIF+IPSKP P L++      + WS EF+DF+  CL K P++R ++ A+L HP++   V+ +++   + G A I  LV   L +L S+R  +
Sbjct:   84 DAEIWIIMEFCMGGSVADMLDATQRTLSEPQIRSICACAALGLAYLHDNHNIHRDLKAGNILLSMNGKAKLADFGVSATLNHSMSKRKTVIGTPYWMAPEVIQEISYDGKADVWSLGITAIEMAEGMPPHFNVHPMRAIFLIPSKPPPQLAQRSTSGQSPWSQEFHDFLSVCLVKDPNQRANAAALLTHPFLKADVDFLRARPAQ-GLAPIADLVGSTLEILASYRRSS 311
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5956.14446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUI5_9PHAE3.320e-22068.20Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G917_ECTSI2.380e-12878.88Protein serine/threonine kinase n=1 Tax=Ectocarpus... [more]
A0A835ZA30_9STRA2.550e-8968.16Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S1UKA4_9STRA8.200e-8457.89Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S1G6G9_9STRA6.670e-7450.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3LJ83_9STRA4.760e-7357.51Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S2RNS6_9STRA8.880e-7248.02Hypothetical protein n=3 Tax=labyrinthulid quahog ... [more]
A0A6A5A656_9STRA2.690e-7048.77Protein kinase domain-containing protein n=5 Tax=A... [more]
A0A151ZSC9_9MYCE5.310e-7060.85Protein serine/threonine kinase n=1 Tax=Tieghemost... [more]
K8YWR4_NANGC8.770e-7051.97Serine/threonine kinase 3 n=3 Tax=Monodopsidaceae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5956contigL-elsbetiae_contig5956:2409..6182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.2
Seed ortholog evalue5.9e-99
Seed eggNOG ortholog2880.D7G917
KEGG koko:K04412
KEGG Pathwayko04010,ko04214,ko04390,ko04391,ko04392,map04010,map04214,map04390,map04391,map04392
KEGG ModuleM00683
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hippo signaling
EggNOG OGsKOG0574@1,KOG0574@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01001
Exons10
Model size1518
Cds size1497
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.839258-UTR-L-elsbetiae_contig5956:2408..24291622816644.839258-UTR-L-elsbetiae_contig5956:2408..2429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5956 2409..2429 +
1691683708.1765857-UTR-L-elsbetiae_contig5956:2408..24291691683708.1765857-UTR-L-elsbetiae_contig5956:2408..2429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5956 2409..2429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.8526902-CDS-L-elsbetiae_contig5956:2429..25701622816644.8526902-CDS-L-elsbetiae_contig5956:2429..2570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 2430..2570 +
1691683708.1877284-CDS-L-elsbetiae_contig5956:2429..25701691683708.1877284-CDS-L-elsbetiae_contig5956:2429..2570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 2430..2570 +
1622816644.8651354-CDS-L-elsbetiae_contig5956:2743..28181622816644.8651354-CDS-L-elsbetiae_contig5956:2743..2818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 2744..2818 +
1691683708.1971352-CDS-L-elsbetiae_contig5956:2743..28181691683708.1971352-CDS-L-elsbetiae_contig5956:2743..2818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 2744..2818 +
1622816644.8750985-CDS-L-elsbetiae_contig5956:3121..31961622816644.8750985-CDS-L-elsbetiae_contig5956:3121..3196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 3122..3196 +
1691683708.2064347-CDS-L-elsbetiae_contig5956:3121..31961691683708.2064347-CDS-L-elsbetiae_contig5956:3121..3196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 3122..3196 +
1622816644.886155-CDS-L-elsbetiae_contig5956:3428..35901622816644.886155-CDS-L-elsbetiae_contig5956:3428..3590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 3429..3590 +
1691683708.2203894-CDS-L-elsbetiae_contig5956:3428..35901691683708.2203894-CDS-L-elsbetiae_contig5956:3428..3590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 3429..3590 +
1622816644.897361-CDS-L-elsbetiae_contig5956:3731..38061622816644.897361-CDS-L-elsbetiae_contig5956:3731..3806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 3732..3806 +
1691683708.2293692-CDS-L-elsbetiae_contig5956:3731..38061691683708.2293692-CDS-L-elsbetiae_contig5956:3731..3806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 3732..3806 +
1622816644.9069176-CDS-L-elsbetiae_contig5956:4088..42051622816644.9069176-CDS-L-elsbetiae_contig5956:4088..4205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 4089..4205 +
1691683708.2382014-CDS-L-elsbetiae_contig5956:4088..42051691683708.2382014-CDS-L-elsbetiae_contig5956:4088..4205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 4089..4205 +
1622816644.9164872-CDS-L-elsbetiae_contig5956:4374..44601622816644.9164872-CDS-L-elsbetiae_contig5956:4374..4460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 4375..4460 +
1691683708.2469907-CDS-L-elsbetiae_contig5956:4374..44601691683708.2469907-CDS-L-elsbetiae_contig5956:4374..4460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 4375..4460 +
1622816644.9341853-CDS-L-elsbetiae_contig5956:4857..49791622816644.9341853-CDS-L-elsbetiae_contig5956:4857..4979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 4858..4979 +
1691683708.2571018-CDS-L-elsbetiae_contig5956:4857..49791691683708.2571018-CDS-L-elsbetiae_contig5956:4857..4979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 4858..4979 +
1622816644.9441388-CDS-L-elsbetiae_contig5956:5387..58781622816644.9441388-CDS-L-elsbetiae_contig5956:5387..5878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 5388..5878 +
1691683708.2703664-CDS-L-elsbetiae_contig5956:5387..58781691683708.2703664-CDS-L-elsbetiae_contig5956:5387..5878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 5388..5878 +
1622816644.9539456-CDS-L-elsbetiae_contig5956:6029..61821622816644.9539456-CDS-L-elsbetiae_contig5956:6029..6182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 6030..6182 +
1691683708.2788515-CDS-L-elsbetiae_contig5956:6029..61821691683708.2788515-CDS-L-elsbetiae_contig5956:6029..6182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5956 6030..6182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5956.14446.1prot_L-elsbetiae_contig5956.14446.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5956 2430..6182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5956.14446.1

>prot_L-elsbetiae_contig5956.14446.1 ID=prot_L-elsbetiae_contig5956.14446.1|Name=mRNA_L-elsbetiae_contig5956.14446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=499bp
MDFVGGGSVSDILEACEVTLSEAEARECTAWTVLALDYLHSNRKLHRDVK
AGNILLTLDGRAKLADFGVSKEVNTMANKAQTAIGTPYWMAPEVIQEVPY
DGQADIWSLAITCIEMVEGNPPLHNVHPMRAIFMIPSKPSPTLSEPAKWS
LEFNDFIGRCLEKKPDERPSSRAILRHPWIATSVEEIQSHGGESGSAVIQ
GLVARHLPVLTSFREDASDAKANMGGEESEECSGYKTATLRRMSSTRGGD
SFRGNGSPGARLPGAHPEETDTSSQTPEQAGDYAEEEEEEEDGYSSDGSV
VRVPIDGGQEERGAGENGYSSSFSVIRADANECRPDGSVIRAPVASNTDE
DDGCSSDGSVVRLPAGEGRVGGGVGGMPQKAAESGLEITVVERGSTGKVP
GHMKLNLLAASKYFGPKGGGLEGGAGAAAEAQRDGSAQSLQTEHDNPQAK
TLLDELEQLDILFANDLSRLRQTYDTKKANLQAELRRLLDSEGAAGVA*
back to top

mRNA from alignment at L-elsbetiae_contig5956:2409..6182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5956.14446.1 ID=mRNA_L-elsbetiae_contig5956.14446.1|Name=mRNA_L-elsbetiae_contig5956.14446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3774bp|location=Sequence derived from alignment at L-elsbetiae_contig5956:2409..6182+ (Laminarionema elsbetiae ELsaHSoW15)
GACAACGAGGCGTGGTTAGTGATGGACTTCGTGGGCGGAGGGAGCGTGAG
CGACATTCTCGAGGCGTGCGAAGTGACGTTGTCAGAGGCAGAGGCAAGGG
AGTGCACCGCCTGGACGGTGCTTGCCCTGGACTACTTGCACAGCAATAGG
AAGTTGCATCGGGTGAGGAGAGGACGGCCTGATGCATCAAATAAGTGTGT
TCGTATCGAGCGAGGACCACCGGTATTCGCGTGTCATTGCGTTGAGAACG
GTTCTGTGGAATTGTCTTTGACGGATGAAATCATCACTTTTTGCATCCTT
TCAATCTTGACGTGTTTTGTTGTTTGTTTCCATAGGATGTGAAGGCTGGA
AACATCCTTCTGACGCTGGACGGCAGGGCAAAGCTCGCGGATTTTGGTGT
GTCAAAAGAGGTATGCTATTTACCTGTGTTTCTTTTTGTCTGGAGGGTTC
CAATGGAGAAGGTCGCCCGACTTGAGCACAGTATTGTTTCTCAAGTCATA
GCTGGCGCTACTGAATACCCGCATCTGCTTTAGTAGGGCTCCCCCGCCCA
TCTCTCCGAGGTTTGTTCCTCAAGGTACCGAGCAGGGTTAGCTGTAGCGC
GGACCCTCCTTGCACGCAGGTGCCGTCCAGGCAAATGTGGAGTCTGGATG
TTTCTGATCTTATATTTATTTTTCCACGTCATCTATTTTCACGTTTTGAC
CCGTCGTCGCAAGGTCAACACGATGGCAAACAAGGCGCAGACAGCTATAG
GCACTCCATACTGGATGGCCCCAGAAGTCATTCAGGAGGTAAGGGGATTC
TGTGGGTGCGTAACTACTGTGTGTTGATTAGTTTCGGCTGAGTTCCATCA
TTGACCCCGCTTGCCGAACGACGCATGTCGGTGGTGATCTTGGTTGACAG
ATACAGCAACGTCATGTGTCGCCAGCGATGCTAATAAGCGGGACTAACTA
CTCACGCAGGCCCATACCTACTGTTTCGGCGACTGTTTGTGGGTTAAACT
CCGTCTGGCTTGCGCTCCAGGTTCCTTATGATGGCCAAGCAGATATCTGG
TCTCTGGCCATTACGTGCATCGAGATGGTAGAGGGCAACCCGCCCCTGCA
CAATGTGCACCCGATGCGAGCCATCTTCATGATACCGTCTAAACCAAGCC
CGACGTTATCCGAGCCTGCTAAATGGTCGCTGGTAAGTGGATTGTCCGCA
TTGCTGTACATGTTTGTACACATATCTACTCCATGTAGCGTAGTGTTGGC
GATGTCCTGGGTGGGATTTTTTGTTAATTCTGCTGACCTGCCACCCCACT
ACGTATTGGTATTGTTCTGGCAGGAATTCAACGACTTCATTGGCAGATGC
TTGGAGAAGAAGCCTGATGAGCGCCCTTCGTCACGAGCTATTCTTCGGGT
CAGTCAGTGCCTTGCGTTATAACCCGACCTATATCGACCATCAAAGTCAA
TGGCTTGTGTCTGGTGGCGAACCGAAGCGAAGGACCACCAGAACTTTGGG
TCTCGCCTTAGTTTCCTTCCCTCAACAGGTCGACGGGTTGAATTGTTGTT
GGTTAGAATGTCACCAACCCTCCACTGCCTTCTGTCGTCCTGGTTCCGAA
CGGCTTTGCTCCCTCTTTGTTGTGCGCATTGATTTGCCCAACATTTTGTC
GTGCGCCAATGTTTTTTTGTGTTGTCGCAGCACCCTTGGATTGCAACAAG
CGTGGAAGAAATCCAATCTCATGGAGGAGAGAGTGGGTCCGCTGTTATCC
AGGGCTTGGTCGCGCGACATCTACCTGTGTTGACAAGCTTTCGAGAGGTG
AGCGTTGGTTCGCCCAAAAAAGCCGTGCTCAAAGGACAGAGCTGTCTTGC
GGGAGAAGTAAGTACACTACTAGCGATACACACCTGATCCACTTTACCCG
CCGCATTGCACAATAATATCCACCCGTGGAGATTTCATACAGCGCGCTTG
CTGCTTCTGTGCACAGGACGCAAGTGATGCTAAGGCGAACATGGGCGGCG
AAGAGAGCGAGGAATGCAGTGGCTACAAGACGGCCACCTTGCGACGAATG
AGGTGAATGACTCGGGTGGTCGCGTTGCTTGCTTTTGTTTCTGTCGACCA
AAGATGGCAGGCAACGTCGTTGTCGACGTTGCTCCTGCCCCTGAGTCTTG
TCAGCACCAACGAATTTTGCGATGCAAATCACCAAATACGTTCGCCTGTT
GGTCGCGACGGAGCGACTCGTGGGTGTGGTGCCACGTGCCAGTACTAAAT
AATGACCAGCTCAAGTTGTTTGAGGCCGCCACGCGCCGTTACAGGGATCG
CTGGTCGCCGTCCACTGTCTGTACAAACGCATACATTCACTGTTTGGAAC
GGGAAAACCATTGGTATTCTGTGGGTTCCATCGTTCTGTGGGTTCCAGCG
AATCCCATCTCTACACCTGTTGAACCGGTGCCGTTTCTCTCTTCCACAGT
AGCACAAGGGGTGGGGACAGCTTTCGCGGGAATGGGTCGCCCGGTGCAAG
ATTGCCCGGTGCACATCCGGAGGAGACGGATACAAGCAGCCAAACGCCCG
AACAGGCAGGCGACTATGCCGGTACGAAACATATCTGTGTGTTAAAAGTG
GTTTTCATTCTTGTGTTTTGCAGCAGCCTGTGTGAGCCGGTCGCATTTTG
CGACCCGGGCACCGAATCGTTGTATAAAACACAAAATTGGACTAAAGATC
TTTGTTATATTGGACTTGCGTGTGTTGTTCAGATCGTTCAGATCGGCGAA
AACTTGAATACGTTTGGAGTTGTTGTGTATCCTTTTGTTGCAGGCACGCT
TTGCCCCCTTGAGCAATCTCGAATCCCCGAGCGGCGGTGTCCTGTCAAAT
GCCTGTCAAATCTGGCAAAACTCAGCAGCGTCGCATGCCCCGCAGCAGGC
GAATCTGTGGGTGACGAGACCAGTTCGGATGGTAGCGTGATCAGGATTCC
CATCTGTGGTGGCCAAGATGAGGAGGAAGAAGAGGAGGAAGAAGAGGAAG
ATGGCTACAGTTCGGACGGTAGCGTCGTAAGGGTTCCCATCGATGGTGGC
CAAGAGGAGAGGGGCGCCGGCGAAAACGGCTACAGTTCTAGCTTCAGCGT
GATCCGAGCTGACGCGAACGAGTGCAGGCCAGATGGCAGCGTGATCAGGG
CGCCTGTTGCGAGCAATACCGACGAGGACGATGGCTGCAGTTCGGATGGC
AGCGTGGTCAGATTACCCGCAGGCGAAGGGAGGGTTGGAGGGGGTGTCGG
CGGAATGCCACAGAAAGCAGCGGAATCAGGTCTTGAAATAACCGTTGTGG
AGAGGGGCAGTACCGGCAAGGTACCAGGCCACATGAAACTGAACCTTCTC
GCGGCTAGCAAATATTTTGGCCCAAAGGGTGGAGGCTTGGAAGGTGGCGC
TGGCGCTGCAGCAGAGGCACAGCGGGACGGATCAGCACAATCTTTACAAA
CGGAACACGACAACCCTCAGGTGCATTTGTGCGCGACAGATAGCGTTAAT
TTTACGGACGGCAAGGTACACAGGTTTACGTGGTAAACATTCGACAATCA
GCCAGTTGTCTTTCGAAATAAGATATCATGACAAACCTCCGTGCCCTCTG
CTTTCCTCGTTTTTTTCTCAGGCCAAAACATTGCTGGACGAGTTAGAACA
GCTAGATATCTTGTTCGCGAACGACCTCTCCCGCCTAAGGCAAACCTACG
ACACCAAGAAGGCGAATCTCCAAGCAGAACTCAGACGTTTGTTGGACAGT
GAAGGAGCGGCGGGCGTTGCGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5956:2409..6182+

>mRNA_L-elsbetiae_contig5956.14446.1 ID=mRNA_L-elsbetiae_contig5956.14446.1|Name=mRNA_L-elsbetiae_contig5956.14446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2994bp|location=Sequence derived from alignment at L-elsbetiae_contig5956:2409..6182+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACTTCGTGGGCGGAGGGAGCGTGAGCGACATTCTCGAGGCGTGCGA
AGTGACGTTGTCAGAGGCAGAGGCAAGGGAGTGCACCGCCTGGACGGTGC
TTGCCCTGGACTACTTGCACAGCAATAGGAAGTTGCATCGGATGGACTTC
GTGGGCGGAGGGAGCGTGAGCGACATTCTCGAGGCGTGCGAAGTGACGTT
GTCAGAGGCAGAGGCAAGGGAGTGCACCGCCTGGACGGTGCTTGCCCTGG
ACTACTTGCACAGCAATAGGAAGTTGCATCGGGATGTGAAGGCTGGAAAC
ATCCTTCTGACGCTGGACGGCAGGGCAAAGCTCGCGGATTTTGGTGTGTC
AAAAGAGGATGTGAAGGCTGGAAACATCCTTCTGACGCTGGACGGCAGGG
CAAAGCTCGCGGATTTTGGTGTGTCAAAAGAGGTCAACACGATGGCAAAC
AAGGCGCAGACAGCTATAGGCACTCCATACTGGATGGCCCCAGAAGTCAT
TCAGGAGGTCAACACGATGGCAAACAAGGCGCAGACAGCTATAGGCACTC
CATACTGGATGGCCCCAGAAGTCATTCAGGAGGTTCCTTATGATGGCCAA
GCAGATATCTGGTCTCTGGCCATTACGTGCATCGAGATGGTAGAGGGCAA
CCCGCCCCTGCACAATGTGCACCCGATGCGAGCCATCTTCATGATACCGT
CTAAACCAAGCCCGACGTTATCCGAGCCTGCTAAATGGTCGCTGGTTCCT
TATGATGGCCAAGCAGATATCTGGTCTCTGGCCATTACGTGCATCGAGAT
GGTAGAGGGCAACCCGCCCCTGCACAATGTGCACCCGATGCGAGCCATCT
TCATGATACCGTCTAAACCAAGCCCGACGTTATCCGAGCCTGCTAAATGG
TCGCTGGAATTCAACGACTTCATTGGCAGATGCTTGGAGAAGAAGCCTGA
TGAGCGCCCTTCGTCACGAGCTATTCTTCGGGAATTCAACGACTTCATTG
GCAGATGCTTGGAGAAGAAGCCTGATGAGCGCCCTTCGTCACGAGCTATT
CTTCGGCACCCTTGGATTGCAACAAGCGTGGAAGAAATCCAATCTCATGG
AGGAGAGAGTGGGTCCGCTGTTATCCAGGGCTTGGTCGCGCGACATCTAC
CTGTGTTGACAAGCTTTCGAGAGCACCCTTGGATTGCAACAAGCGTGGAA
GAAATCCAATCTCATGGAGGAGAGAGTGGGTCCGCTGTTATCCAGGGCTT
GGTCGCGCGACATCTACCTGTGTTGACAAGCTTTCGAGAGGACGCAAGTG
ATGCTAAGGCGAACATGGGCGGCGAAGAGAGCGAGGAATGCAGTGGCTAC
AAGACGGCCACCTTGCGACGAATGAGGACGCAAGTGATGCTAAGGCGAAC
ATGGGCGGCGAAGAGAGCGAGGAATGCAGTGGCTACAAGACGGCCACCTT
GCGACGAATGAGTAGCACAAGGGGTGGGGACAGCTTTCGCGGGAATGGGT
CGCCCGGTGCAAGATTGCCCGGTGCACATCCGGAGGAGACGGATACAAGC
AGCCAAACGCCCGAACAGGCAGGCGACTATGCCGTAGCACAAGGGGTGGG
GACAGCTTTCGCGGGAATGGGTCGCCCGGTGCAAGATTGCCCGGTGCACA
TCCGGAGGAGACGGATACAAGCAGCCAAACGCCCGAACAGGCAGGCGACT
ATGCCGAAGAGGAGGAAGAAGAGGAAGATGGCTACAGTTCGGACGGTAGC
GTCGTAAGGGTTCCCATCGATGGTGGCCAAGAGGAGAGGGGCGCCGGCGA
AAACGGCTACAGTTCTAGCTTCAGCGTGATCCGAGCTGACGCGAACGAGT
GCAGGCCAGATGGCAGCGTGATCAGGGCGCCTGTTGCGAGCAATACCGAC
GAGGACGATGGCTGCAGTTCGGATGGCAGCGTGGTCAGATTACCCGCAGG
CGAAGGGAGGGTTGGAGGGGGTGTCGGCGGAATGCCACAGAAAGCAGCGG
AATCAGGTCTTGAAATAACCGTTGTGGAGAGGGGCAGTACCGGCAAGGTA
CCAGGCCACATGAAACTGAACCTTCTCGCGGCTAGCAAATATTTTGGCCC
AAAGGGTGGAGGCTTGGAAGGTGGCGCTGGCGCTGCAGCAGAGGCACAGC
GGGACGGATCAGCACAATCTTTACAAACGGAACACGACAACCCTCAGAAG
AGGAGGAAGAAGAGGAAGATGGCTACAGTTCGGACGGTAGCGTCGTAAGG
GTTCCCATCGATGGTGGCCAAGAGGAGAGGGGCGCCGGCGAAAACGGCTA
CAGTTCTAGCTTCAGCGTGATCCGAGCTGACGCGAACGAGTGCAGGCCAG
ATGGCAGCGTGATCAGGGCGCCTGTTGCGAGCAATACCGACGAGGACGAT
GGCTGCAGTTCGGATGGCAGCGTGGTCAGATTACCCGCAGGCGAAGGGAG
GGTTGGAGGGGGTGTCGGCGGAATGCCACAGAAAGCAGCGGAATCAGGTC
TTGAAATAACCGTTGTGGAGAGGGGCAGTACCGGCAAGGTACCAGGCCAC
ATGAAACTGAACCTTCTCGCGGCTAGCAAATATTTTGGCCCAAAGGGTGG
AGGCTTGGAAGGTGGCGCTGGCGCTGCAGCAGAGGCACAGCGGGACGGAT
CAGCACAATCTTTACAAACGGAACACGACAACCCTCAGGCCAAAACATTG
CTGGACGAGTTAGAACAGCTAGATATCTTGTTCGCGAACGACCTCTCCCG
CCTAAGGCAAACCTACGACACCAAGAAGGCGAATCTCCAAGCAGAACTCA
GACGTTTGTTGGACAGTGAAGGAGCGGCGGGCGTTGCGTAGGCCAAAACA
TTGCTGGACGAGTTAGAACAGCTAGATATCTTGTTCGCGAACGACCTCTC
CCGCCTAAGGCAAACCTACGACACCAAGAAGGCGAATCTCCAAGCAGAAC
TCAGACGTTTGTTGGACAGTGAAGGAGCGGCGGGCGTTGCGTAG
back to top