mRNA_L-elsbetiae_contig5953.14443.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5953.14443.1
Unique NamemRNA_L-elsbetiae_contig5953.14443.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5953.14443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5953contigL-elsbetiae_contig5953:10039..10743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size705
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5953.14443.1prot_L-elsbetiae_contig5953.14443.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5953 10190..10633 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.451566-UTR-L-elsbetiae_contig5953:10038..101891622816644.451566-UTR-L-elsbetiae_contig5953:10038..10189Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5953 10039..10189 +
1691683707.945139-UTR-L-elsbetiae_contig5953:10038..101891691683707.945139-UTR-L-elsbetiae_contig5953:10038..10189Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5953 10039..10189 +
1622816644.478329-UTR-L-elsbetiae_contig5953:10633..107431622816644.478329-UTR-L-elsbetiae_contig5953:10633..10743Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5953 10634..10743 +
1691683707.9672608-UTR-L-elsbetiae_contig5953:10633..107431691683707.9672608-UTR-L-elsbetiae_contig5953:10633..10743Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5953 10634..10743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.465535-CDS-L-elsbetiae_contig5953:10189..106331622816644.465535-CDS-L-elsbetiae_contig5953:10189..10633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5953 10190..10633 +
1691683707.9562736-CDS-L-elsbetiae_contig5953:10189..106331691683707.9562736-CDS-L-elsbetiae_contig5953:10189..10633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5953 10190..10633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5953.14443.1

>prot_L-elsbetiae_contig5953.14443.1 ID=prot_L-elsbetiae_contig5953.14443.1|Name=mRNA_L-elsbetiae_contig5953.14443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MHFVIALGVVFRRSVEHGPHLLVHICVHMIYVCVIGENGLRACLAPKNKL
SACSPVLIVIETAVCCLYERVFRLHPGAPLPSTLGGERERERERGNGFQF
VYKLWVHFVTHPHAGSFPHRCVWKSKGQKGARETFATKPLCRSRYGT*
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mRNA from alignment at L-elsbetiae_contig5953:10039..10743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5953.14443.1 ID=mRNA_L-elsbetiae_contig5953.14443.1|Name=mRNA_L-elsbetiae_contig5953.14443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=705bp|location=Sequence derived from alignment at L-elsbetiae_contig5953:10039..10743+ (Laminarionema elsbetiae ELsaHSoW15)
CCATCCGCCGGCCGCCATGCACACGCACAAGAAGGGTGTGGAGAGGAACG
AGCGATGGAGACTTCACCAGCGCAGGCCGTAAAGGTGGTACCTGGTACAG
ATGAAAGCTAGCTGAGCGCCACTAATACAAGTTGGGAGCGTTGTTTGACA
CATGCATTTTGTTATTGCTCTTGGTGTCGTCTTTCGGCGTAGTGTTGAGC
ACGGCCCTCACCTGCTCGTACATATCTGTGTACATATGATATATGTCTGC
GTCATAGGTGAGAATGGATTGCGTGCGTGCCTTGCCCCGAAAAACAAACT
GTCAGCTTGTAGTCCCGTTTTGATCGTAATAGAGACAGCGGTTTGTTGCT
TGTACGAACGAGTTTTCCGCCTACATCCAGGTGCGCCCCTCCCGAGTACG
CTTGGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAACGGATTTCAATT
TGTTTACAAATTATGGGTACACTTCGTGACTCATCCTCATGCCGGTTCGT
TTCCACACCGATGTGTCTGGAAATCCAAAGGTCAAAAGGGCGCTCGAGAA
ACTTTCGCTACAAAACCATTGTGTAGATCTAGATATGGTACGTAAATATA
AAGTCTGAAGAGGTTGCATCGCAACGCACATCTGCAACGGGTGTACGATA
CTATAATAGTTTGCGAATAATGAGCCGCACACACCCAACCCAACCCAACC
CAACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5953:10039..10743+

>mRNA_L-elsbetiae_contig5953.14443.1 ID=mRNA_L-elsbetiae_contig5953.14443.1|Name=mRNA_L-elsbetiae_contig5953.14443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig5953:10039..10743+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATTTTGTTATTGCTCTTGGTGTCGTCTTTCGGCGTAGTGTTGAGCA
CGGCCCTCACCTGCTCGTACATATCTGTGTACATATGATATATGTCTGCG
TCATAGGTGAGAATGGATTGCGTGCGTGCCTTGCCCCGAAAAACAAACTG
TCAGCTTGTAGTCCCGTTTTGATCGTAATAGAGACAGCGGTTTGTTGCTT
GTACGAACGAGTTTTCCGCCTACATCCAGGTGCGCCCCTCCCGAGTACGC
TTGGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAACGGATTTCAATTT
GTTTACAAATTATGGGTACACTTCGTGACTCATCCTCATGCCGGTTCGTT
TCCACACCGATGTGTCTGGAAATCCAAAGGTCAAAAGGGCGCTCGAGAAA
CTTTCGCTACAAAACCATTGTGTAGATCTAGATATGGTACGTAAATGCAT
TTTGTTATTGCTCTTGGTGTCGTCTTTCGGCGTAGTGTTGAGCACGGCCC
TCACCTGCTCGTACATATCTGTGTACATATGATATATGTCTGCGTCATAG
GTGAGAATGGATTGCGTGCGTGCCTTGCCCCGAAAAACAAACTGTCAGCT
TGTAGTCCCGTTTTGATCGTAATAGAGACAGCGGTTTGTTGCTTGTACGA
ACGAGTTTTCCGCCTACATCCAGGTGCGCCCCTCCCGAGTACGCTTGGTG
GAGAGAGAGAGAGAGAGAGAGAGAGAGGCAACGGATTTCAATTTGTTTAC
AAATTATGGGTACACTTCGTGACTCATCCTCATGCCGGTTCGTTTCCACA
CCGATGTGTCTGGAAATCCAAAGGTCAAAAGGGCGCTCGAGAAACTTTCG
CTACAAAACCATTGTGTAGATCTAGATATGGTACGTAA
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