mRNA_L-elsbetiae_contig5952.14441.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5952.14441.1
Unique NamemRNA_L-elsbetiae_contig5952.14441.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5952.14441.1 vs. uniprot
Match: D7G5C5_ECTSI (DUF1394 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C5_ECTSI)

HSP 1 Score: 423 bits (1088), Expect = 3.070e-140
Identity = 214/272 (78.68%), Postives = 250/272 (91.91%), Query Frame = 1
Query:    1 ITLVLQKCSEAIRIVQEYDGCGSVIRRSMSAPRDEGLESAATAALLPNVEKIRNFFEIARAMEQMMPVLLRRLAELASIVERPLLACKLTELLQVVLEWDQLKMMRPQIQNDFATYRRFLSRLKREEEAGLLSKLPVADTDANAISMFIAENVPMMCVLAKVTAKTAIDVPRVRSVIATVANMCCGMVHRRVYKSDATSRKLLMAMTSAAVLYDRITDSGVFVKRSHVGVSKCIKVLNKHGGATGEQLRATLRYSTMHYNSETTPKNIRNAL 816
            + LV+++CS+AI+ VQ+Y+GC ++IR+SMSAP+D  L+SA T ALLPNV+KI+ FF++AR +EQ+ P LL RLA L SIVE PLLAC LTELLQ VLEWDQ+KMMRPQ+QNDFATYRR+LSRLKRE+EAGLL +LPVADTDANAISMFIAENVPMM +L+KVTAKTA +VPRV++VIATVANMCCGMVHRR + +DATSRKLLMAMTSAAVLYDRITDSGVFV+RSH+GVSKCIKVLN+HGGATGEQLRATLRYSTMHYNS+TTPKNIR+AL
Sbjct:   54 LCLVVERCSDAIQSVQQYEGCSALIRQSMSAPKDTELQSAVTEALLPNVKKIKTFFDLARDVEQLAPALLGRLAGLGSIVEAPLLACMLTELLQAVLEWDQIKMMRPQVQNDFATYRRYLSRLKREQEAGLLLELPVADTDANAISMFIAENVPMMVMLSKVTAKTAEEVPRVQNVIATVANMCCGMVHRRAHTNDATSRKLLMAMTSAAVLYDRITDSGVFVRRSHIGVSKCIKVLNRHGGATGEQLRATLRYSTMHYNSDTTPKNIRDAL 325          
BLAST of mRNA_L-elsbetiae_contig5952.14441.1 vs. uniprot
Match: A0A835YT34_9STRA (DUF1394 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT34_9STRA)

HSP 1 Score: 183 bits (465), Expect = 8.850e-49
Identity = 124/290 (42.76%), Postives = 160/290 (55.17%), Query Frame = 1
Query:    1 ITLVLQKCSE-------AIRIVQEYDGCGSVIRRSMSAPRDEGLESAATAALLPNVEKIRNFFEIARAMEQMMPVLLRRLAELAS-------IVERPLLACKLTELLQVVL--EWDQLKMMRPQIQNDFATYRRFLSRLKREEEAGLLSKLPVADTDANAISMFIAENVPMMCVLAKVTAKTAIDVPRVRSVIATVANMCCGMVHRRV-YKSDATSRKLLMAMTSAAVLYDRITDSGVFVKRSHVGVSKCIKVLNKHGGATGEQLRATLRYSTMHYNSETTPKNIRNALE 819
            +  V+Q+C         A+  V  Y GC  VIR SMSAP D   + AA  ALLPNV++I +    ++A          +L             VE     C  +  LQ      +D+L  +  QIQNDFA Y+R + R+    +   L +L V+D  A  ISMFIAEN+P+   L+           R  ++IA VAN+CCG V R   Y+ DAT R+LL+ MTSA VLYDRIT  GVF +   VGVS+CIKVLNKHGG  G QLR  + Y+T H+NSETTP NIR AL+
Sbjct:   24 VRTVMQECLRCKAQIHGALEAVNAYTGCADVIRHSMSAPGDHSAQRAAFDALLPNVDRIASLHATSQASSS------EKLVGYGGGEHFHFFAVEEMRGVCAPSYTLQRTHFDHYDRLVTL-SQIQNDFAFYKRLMPRMVASSDY-TLEQLTVSDRHAGTISMFIAENMPLTVALSTALRDNT-TASRTANIIAQVANLCCGTVARADGYRQDATLRQLLLGMTSAVVLYDRITIEGVFARGGGVGVSRCIKVLNKHGGDAGLQLRNCIMYATKHFNSETTPNNIRRALQ 304          
BLAST of mRNA_L-elsbetiae_contig5952.14441.1 vs. uniprot
Match: UPI0006B08DE9 (protein FAM49B-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B08DE9)

HSP 1 Score: 149 bits (375), Expect = 4.190e-36
Identity = 96/285 (33.68%), Postives = 157/285 (55.09%), Query Frame = 1
Query:   10 VLQKCSEAIRIVQEYDGCGSVIRRSMSAPRDEGLESAATAALLPNVEKIRNFFEIARAMEQMMPVLLRRLAE-----LASIVERPLLACKLTELLQVVLEWDQLKMMRPQIQNDFATYRRFLSRLKREEEAGLLSK-LPVADTDANAISMFIAENVPMMCVLAKVTAKTAID-----VPRVRSVIATVANMCCGMVHRRV----YKSDATSRKLLMAMTSAAVLYDRITDSGVFVKRSHVGVSKCIKVLNKHGGATGEQLRATLRYSTMHYNSETTPKNIRNALE 819
            VL+   E +  ++ Y G G+ I+ ++  P+++  +SAA   ++P V K+R F+E ++ +EQ++P +L  L       +  +  +  L  +  E+L  VLE+D LKM  P IQNDF+ YRR +SRL+   +  + ++ L V +  AN +S+F A   PM+ VL+  T++   D     V      + T+A +C  MV        +  + TS  +L  M    +LYD +  +G FVK SH+ +  CIKVL ++     E L   LRY+T+H N E+TPK+I+N L+
Sbjct:   41 VLKHSREILADLRIYKGAGNEIKVAIGNPQNKQSQSAAWEVVIPLVTKLREFYEFSKKLEQVVPHILWDLCSGPMTPMQHLETQQALVKQFAEILDFVLEFDDLKMTNPAIQNDFSYYRRTVSRLRIANQDNIENEDLEVPNELANRMSLFYAHATPMLKVLSDTTSQFVSDNKDLPVENTSETLGTMAKVCQRMVENPELCARFNHEDTSLFVLRVMVGVVILYDHVHPAGAFVKSSHIDIKSCIKVLKEYPPEVVESLLNALRYTTIHLNDESTPKHIKNMLQ 325          
BLAST of mRNA_L-elsbetiae_contig5952.14441.1 vs. uniprot
Match: A0A0G4IKW3_PLABS (DUF1394 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IKW3_PLABS)

HSP 1 Score: 143 bits (360), Expect = 3.090e-34
Identity = 90/275 (32.73%), Postives = 155/275 (56.36%), Query Frame = 1
Query:   10 VLQKCSEAIRIVQEYDGCGSVIRRSMSAPRDEGLESAATAALLPNVEKIRNFFEIARAMEQMMPVLLRRLA---ELASIVERPLLACKLTELLQVVLEWDQLKMMRPQIQNDFATYRRFLSRLKREEEAGLLSKLPVADTDANAISMFIAENVPMMCVLAKVTAKTAIDVPRVRSVIATVANMCCGMVHRRVYKSDATSRKLLMAMTSAAVLYDRIT-DSGVFVKRSHVGVSKCIKVLNKHGGATGEQLRATLRYSTMHYNSETTPKNIRNALEI 822
            +L++    I  ++ Y  CG+ IR+++S P  +  E  A  A+  NV  I  FF  ++ +  M+  LL+ LA   E  +         +L  LL  VL +D+LKM+RP IQNDF+ YRR L +   + +      L V D +A+ IS++IA+ +PMM  LAK T+   +  P V + +A +AN+C  ++  + + +  T++ L+  M  + VL+D ++ + G FVK+S + + + ++++ K    T   L   LRYST+HY+ ++TP  IR+ L++
Sbjct:   41 ILERAPGVIAALEAYANCGAQIRKALSDPNPKS-EQEAFQAVKANVAIINMFFNFSKEVANMVRELLKTLATGQEKEAFCAHQFSVKQLGRLLDFVLRFDELKMLRPGIQNDFSYYRRVLPKHSNDPD------LKVRDEEASFISLYIAQPIPMMTALAKSTSSLYVSNPNVPAALALMANVCLELLKSKRFTTSETNQLLVRVMVGSIVLFDHVSLEGGAFVKKSGINIKQAVQLVVKEY-PTQNSLTNMLRYSTLHYSDDSTPAGIRSLLDV 307          
BLAST of mRNA_L-elsbetiae_contig5952.14441.1 vs. uniprot
Match: A0A1Y1XK05_9FUNG (DUF1394-domain-containing protein n=2 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1XK05_9FUNG)

HSP 1 Score: 140 bits (354), Expect = 2.470e-33
Identity = 88/280 (31.43%), Postives = 147/280 (52.50%), Query Frame = 1
Query:   10 VLQKCSEAIRIVQEYDGCGSVIRRSMSAPRDEGLESAATAALLPNVEKIRNFFEIARAMEQMMPVLLRRLAELASIVER----PLLACKLTELLQVVLEWDQLKMMRPQIQNDFATYRRFLSRLKREEEAGLLSKLPVADTDANAISMFIAENVPMMCVLAKVT-------AKTAIDVPRVRSVIATVANMCCGMVHRRVYKSDATSRKLLMAMTSAAVLYDRITDSGVFVKRSHVGVSKCIKVLNKHGGATGEQLRATLRYSTMHYNSETTPKNIRNAL 816
            +L + +  ++ +++Y GCG +IR+++S+P  +  E  A  AL P+  K++ ++E ++ +E + P +L  L +  +I E          KL +LL  VL++D LKM  P IQNDF+ YRR LSR+K        + +PV D  AN +S+F A + PM   +   T       +K+ +D  +V   ++ +  +C   V +   +S       L  M    +L+D I   G F K S + +  CI+++    G   + L  TLRY++ H N E TPK+I+N L
Sbjct:   41 LLNRSNAILQSLRQYTGCGELIRKAISSPSPQ-TEEEAWVALCPSAMKLKKYYEFSQRIEDIFPRILYVLCK-GNITENLEKYQATTKKLADLLNFVLQFDDLKMTNPSIQNDFSYYRRLLSRVKNNYNINKQT-IPVNDELANRMSLFYAYSTPMFKAVTDATLLFVSPNSKSGVDASQVSECLSLLTYICYNAVSKYRVQSQPMISFCLRVMVGCIILFDHIDPDGAFAKNSKINIRGCIRLIQGSAGVDADSLLNTLRYTSKHLNDEATPKSIKNLL 317          
BLAST of mRNA_L-elsbetiae_contig5952.14441.1 vs. uniprot
Match: A0A1Y2CI08_9FUNG (DUF1394-domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2CI08_9FUNG)

HSP 1 Score: 140 bits (352), Expect = 4.590e-33
Identity = 88/279 (31.54%), Postives = 146/279 (52.33%), Query Frame = 1
Query:   10 VLQKCSEAIRIVQEYDGCGSVIRRSMSAPRDEGLESAATAALLPNVEKIRNFFEIARAMEQMMPVLLRRLAE---LASIVERPLLACKLTELLQVVLEWDQLKMMRPQIQNDFATYRRFLSRLKREEEAGLLSKLPVADTDANAISMFIAENVPMMCVLAKVT-------AKTAIDVPRVRSVIATVANMCCGMVHRRVYKSDATSRKLLMAMTSAAVLYDRITDSGVFVKRSHVGVSKCIKVLNKHGGATGEQLRATLRYSTMHYNSETTPKNIRNAL 816
            +L + +  ++ +++Y GCG +IR+++S P  +  E  A  AL P+  K+R ++E ++ +E + P +L  L     + ++        KL +LL  VL++D LKM  P IQNDF+ YRR LSR+K   +      +PV D  AN +S+F A + PM   +   T       +K+ I   +V   ++ +  +C   V +   +S       L  M    +L+D I   G FVK S + +  CI+++    G   + L  TLR+++ H N ETTPK+I+N L
Sbjct:   41 LLNRSNAILQSLRQYTGCGELIRKAISNPCPQ-TEEDAWNALCPSAMKLRKYYEFSQRIEDIFPRILYVLCNGNIIQNLERYQATTRKLADLLNFVLQFDDLKMTNPSIQNDFSYYRRLLSRVKNNHKINK-QNVPVNDELANRMSLFYAYSTPMFKAITDSTLTFVSPSSKSNISAAQVGECLSLITYICYNAVSKYRVQSQPMISFCLRVMVGCIILFDHIDPEGAFVKNSKINIKGCIRLIQGSAGVDADSLLNTLRFTSKHVNDETTPKSIKNLL 317          
BLAST of mRNA_L-elsbetiae_contig5952.14441.1 vs. uniprot
Match: A0A7S4DWY5_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S4DWY5_9EUKA)

HSP 1 Score: 138 bits (347), Expect = 2.410e-32
Identity = 87/270 (32.22%), Postives = 151/270 (55.93%), Query Frame = 1
Query:   10 VLQKCSEAIRIVQEYDGCGSVIRRSMSAPRDEGLESAATAALLPNVEKIRNFFEIARAMEQMMPVLLRRLAELASIVERPL-----LACKLTELLQVVLEWDQLKMMRPQIQNDFATYRRFLSRLKREEEAGLLSKLPVADTDANAISMFIAENVPMMCVLAKVTAKTAIDVPRVRSVIATVANMCCGMVHRRVYKSDATSRKLLMAMTSAAVLYDRITDSGVFVKRSHVGVSKCIKVLNKHGGATGEQLRATLRYSTMHYNSETTPKNI 804
            +L +C + + ++ EY  C  +  ++MS+P +E  E  A +ALL +V+ ++ F++ +  +++ +PVLL  L++ A   ++ L     L  +   +L  VL +DQ++MMRP + NDF+ YRR+L +  R  +      + V   +A+A+++F A + PMM  L+  TA+       V + ++ +AN C  M+  + + S  T++ +  AM  A VL+D +  SGVF K S V +   IK L K        L AT+RYS+ ++  ETTP +I
Sbjct:   58 ILDQCPKVLSLINEYKDCTQLCSKAMSSPSEES-EEKAFSALLKSVKSVKVFYDFSNDLKKCVPVLLNELSKPAEETKQTLQDQQALVKQFANILDFVLTFDQIRMMRPHLSNDFSYYRRYLPKFSRRPD------IDVKADEASAMALFTARHCPMMVSLSSATAECLEQNRHVTNAMSAMANACLAMLKNKRFSSVDTNKYVARAMVGAVVLFDHVYPSGVFYK-SPVDIKGIIKFLKK-AEFDAVSLLATIRYSSKNFKHETTPSSI 318          
BLAST of mRNA_L-elsbetiae_contig5952.14441.1 vs. uniprot
Match: A0A0H5RBK7_9EUKA (DUF1394 domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RBK7_9EUKA)

HSP 1 Score: 135 bits (339), Expect = 2.040e-31
Identity = 86/276 (31.16%), Postives = 154/276 (55.80%), Query Frame = 1
Query:   10 VLQKCSEAIRIVQEYDGCGSVIRRSMSAPRDEGLESAATAALLPNVEKIRNFFEIARAMEQMMPVLLRRLA---ELASIVERPLLACKLTELLQVVLEWDQLKMMRPQIQNDFATYRRFLSRLKREEEAGLLSKLPVADTDANAISMFIAENVPMMCVLAKVTAKTAIDVPRVRSVIATVANMCCGMVHRRVYKSDATSRKLLMAMTSAAVLYDRIT-DSGVFVKRSHVGVSKCIKVLNKHGGATGEQLRATLRYSTMHYNSETTPKNIRNALEIE 825
            +L +      +++ Y  CG+ IR+++S P  +  E  A  A+  NV+ I  F+  ++ +  ++  LL+ LA   E  +         +   LL  VL +D+LKM RP IQNDF+ YRR L++   + +      + V D +A+ IS++IA+++PMM  LAK T+   +  P V   +A  +N+C  ++  + ++S  T++ L   M  A VL+D I+ + G FVK+S + + + ++++ K   +T   L   LRYST+H+  ++TP  IR+ L+++
Sbjct:   40 ILSRSYRMTEMLEAYCNCGTYIRKALSEPSSKS-ELEAFLAVKLNVDVISAFYTYSKEVANIVRDLLKFLATGQEKEAFCSHQYSVKQFGRLLDFVLRFDELKMQRPGIQNDFSYYRRVLAKHANDPD------IKVRDEEASFISLYIAQSIPMMSALAKATSSLYVSNPNVPQALALTSNVCLELLKSKRFQSPETNQLLTRIMVGAIVLFDHISLEGGAFVKKSGINIKQAVQLVVKEYPSTSS-LTNMLRYSTLHFADDSTPNGIRSLLDVD 307          
BLAST of mRNA_L-elsbetiae_contig5952.14441.1 vs. uniprot
Match: UPI00140276CB (protein FAM49B-like n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI00140276CB)

HSP 1 Score: 135 bits (339), Expect = 3.050e-31
Identity = 93/289 (32.18%), Postives = 152/289 (52.60%), Query Frame = 1
Query:    1 ITLVLQKCSEAIRIVQEYDGCGSVIRRSMSAPRDEGLESAATAALLPNVEKIRNFFEIA----RAMEQMMPVLLRRLAELASIVERP-LLACKLTELLQVVLEWDQLKMMRPQIQNDFATYRRFLSRLKR-EEEAGLLSKLPVADTDANAISMFIAENVPMMCVLAKVTAK------TAIDVPRVRSVIATVANMCCGMVHRRVYK----SDATSRKLLMAMTSAAVLYDRITDSGVFVKRSHVGVSKCIKVLNKHGGATGEQLRATLRYSTMHYNSETTPKNIRNALE 819
            +  VL      +  +++Y G GS IR ++S P DE  +    AA+ P V K++ F+E +    RAM +++ VL          +ER   LA +  ++L   L++D+LKM  P +QNDF+ YRR LSR++     AG  ++  V++  AN +S+F AE+ PM+  L+  T +      + + +      ++T+A++C  M+    Y+    S+ +    L  M    +LYD +   G F K S + +  CIKVL +   A+ E L   LRY+T H N ET+ K I+N L+
Sbjct:   40 VNAVLSVAETLLSELRDYPGAGSEIREAISHPEDEAAQGRVWAAVCPLVSKLKGFYEFSVQLERAMVRLLEVLTAPPCTPVQHLEREQALAKQFAQILHFTLQFDELKMTNPSVQNDFSFYRRTLSRMRMTNSNAG--TEAEVSNEMANRMSLFYAESTPMLKTLSNATTRFVSEHESVVPLENTTDCLSTMASLCKAMLDTPEYRCRFGSEDSMLFCLRVMVGLIILYDHVHPVGAFAKTSKLDMKGCIKVLKEQPQASVEGLLNALRYTTRHINDETSCKQIKNMLQ 326          
BLAST of mRNA_L-elsbetiae_contig5952.14441.1 vs. uniprot
Match: A0A4P9XN17_9FUNG (DUF1394 domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XN17_9FUNG)

HSP 1 Score: 134 bits (338), Expect = 3.710e-31
Identity = 104/291 (35.74%), Postives = 154/291 (52.92%), Query Frame = 1
Query:    4 TLVLQKCSEAIRIV---QEYDGCGSVIRRSMSAPRDEGLESAATAALLPNVEKIRNFFEIARAMEQMMPVLLRRL--------AELASIV-----ERPLLACKLTELLQVVLEWDQLKMMRPQIQNDFATYRRFLSRLKREEEAGLLSKLPVADTDANAISMFIAENVPMMCVLAKVTAKTAIDVP---RVRSVIATVANMCC-GMVHRRVYKSDATSRKLLMAMTSAAVLYDRITDSGVFVKRSHVGVSKCIKVLNKHGGATGEQLRATLRYSTMHYNSETTPKNIRNAL 816
            T VL      +RI+   +EY GC   IR+++S P  E  E AA  A+ P VE++R F+E A A+E  +P LL  +        +E  +IV      RP L     ++L  V E+D+LKM  P IQNDF+ YRR L+RLK   +  + + + V D  AN +S+F A + PM+  +  V +K     P   R   V+A +A +C   +V  R+   DA +   L    + AVLYD I  +GVFV+ S + +   ++V N++       + A LRY+T H N E+TPK +R  L
Sbjct:   34 TYVLNLLRPTVRILATLREYQGCNEYIRQAISNPCPE-TEEAAWEAVCPAVERLREFYEYAAALEDAVPRLLADMIKVDGSSDSEDPAIVYRVLERRPALVRLFADVLDFVFEFDELKMGNPAIQNDFSYYRRTLNRLKMSSQMAMRTPV-VNDELANLMSLFYAHHTPMLKTVIDVASKFVSSRPDGFRGADVLAGLAGVCYHAIVKERLTHPDAIAF-CLRVQVACAVLYDHIHPAGVFVRTSPINIRNTVRVCNEYAPQQSSLVNA-LRYNTRHLNDESTPKALRQLL 320          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5952.14441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C5_ECTSI3.070e-14078.68DUF1394 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YT34_9STRA8.850e-4942.76DUF1394 domain-containing protein n=1 Tax=Tribonem... [more]
UPI0006B08DE94.190e-3633.68protein FAM49B-like n=1 Tax=Limulus polyphemus Tax... [more]
A0A0G4IKW3_PLABS3.090e-3432.73DUF1394 domain-containing protein n=1 Tax=Plasmodi... [more]
A0A1Y1XK05_9FUNG2.470e-3331.43DUF1394-domain-containing protein n=2 Tax=Neocalli... [more]
A0A1Y2CI08_9FUNG4.590e-3331.54DUF1394-domain-containing protein n=1 Tax=Neocalli... [more]
A0A7S4DWY5_9EUKA2.410e-3232.22Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]
A0A0H5RBK7_9EUKA2.040e-3131.16DUF1394 domain-containing protein n=1 Tax=Spongosp... [more]
UPI00140276CB3.050e-3132.18protein FAM49B-like n=1 Tax=Petromyzon marinus Tax... [more]
A0A4P9XN17_9FUNG3.710e-3135.74DUF1394 domain-containing protein n=1 Tax=Thamnoce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5952contigL-elsbetiae_contig5952:5450..10636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score391.0
Seed ortholog evalue4.3e-106
Seed eggNOG ortholog2880.D7G5C5
Preferred nameFAM49B
Hectar predicted targeting categoryother localisation
GOsGO:0001817,GO:0001819,GO:0001910,GO:0001912,GO:0001914,GO:0001916,GO:0002576,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002709,GO:0002711,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0022407,GO:0022409,GO:0023023,GO:0023025,GO:0023029,GO:0023030,GO:0030141,GO:0030155,GO:0031091,GO:0031093,GO:0031341,GO:0031343,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032649,GO:0032729,GO:0032940,GO:0034774,GO:0042287,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045785,GO:0046903,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0060205,GO:0065007,GO:0070013,GO:0097708,GO:0099503,GO:0120025,GO:1903037,GO:1903039,GO:2000567,GO:2000568
EggNOG free text desc.positive regulation of memory T cell activation
EggNOG OGsKOG3951@1,KOG3951@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2169
Cds size747
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.3201056-UTR-L-elsbetiae_contig5952:5449..55301622816644.3201056-UTR-L-elsbetiae_contig5952:5449..5530Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5952 5450..5530 +
1691683707.8330913-UTR-L-elsbetiae_contig5952:5449..55301691683707.8330913-UTR-L-elsbetiae_contig5952:5449..5530Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5952 5450..5530 +
1622816644.3328779-UTR-L-elsbetiae_contig5952:6039..60421622816644.3328779-UTR-L-elsbetiae_contig5952:6039..6042Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5952 6040..6042 +
1691683707.8458564-UTR-L-elsbetiae_contig5952:6039..60421691683707.8458564-UTR-L-elsbetiae_contig5952:6039..6042Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5952 6040..6042 +
1622816644.418147-UTR-L-elsbetiae_contig5952:9298..106361622816644.418147-UTR-L-elsbetiae_contig5952:9298..10636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5952 9299..10636 +
1691683707.9336967-UTR-L-elsbetiae_contig5952:9298..106361691683707.9336967-UTR-L-elsbetiae_contig5952:9298..10636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5952 9299..10636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.343482-CDS-L-elsbetiae_contig5952:6042..61501622816644.343482-CDS-L-elsbetiae_contig5952:6042..6150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 6043..6150 +
1691683707.858358-CDS-L-elsbetiae_contig5952:6042..61501691683707.858358-CDS-L-elsbetiae_contig5952:6042..6150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 6043..6150 +
1622816644.355433-CDS-L-elsbetiae_contig5952:6667..67841622816644.355433-CDS-L-elsbetiae_contig5952:6667..6784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 6668..6784 +
1691683707.873352-CDS-L-elsbetiae_contig5952:6667..67841691683707.873352-CDS-L-elsbetiae_contig5952:6667..6784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 6668..6784 +
1622816644.3691943-CDS-L-elsbetiae_contig5952:7229..73731622816644.3691943-CDS-L-elsbetiae_contig5952:7229..7373Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 7230..7373 +
1691683707.8844278-CDS-L-elsbetiae_contig5952:7229..73731691683707.8844278-CDS-L-elsbetiae_contig5952:7229..7373Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 7230..7373 +
1622816644.3813336-CDS-L-elsbetiae_contig5952:8003..81311622816644.3813336-CDS-L-elsbetiae_contig5952:8003..8131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 8004..8131 +
1691683707.8951612-CDS-L-elsbetiae_contig5952:8003..81311691683707.8951612-CDS-L-elsbetiae_contig5952:8003..8131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 8004..8131 +
1622816644.3914738-CDS-L-elsbetiae_contig5952:8607..87131622816644.3914738-CDS-L-elsbetiae_contig5952:8607..8713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 8608..8713 +
1691683707.9084535-CDS-L-elsbetiae_contig5952:8607..87131691683707.9084535-CDS-L-elsbetiae_contig5952:8607..8713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 8608..8713 +
1622816644.401234-CDS-L-elsbetiae_contig5952:9154..92981622816644.401234-CDS-L-elsbetiae_contig5952:9154..9298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 9155..9298 +
1691683707.9194272-CDS-L-elsbetiae_contig5952:9154..92981691683707.9194272-CDS-L-elsbetiae_contig5952:9154..9298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5952 9155..9298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5952.14441.1prot_L-elsbetiae_contig5952.14441.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5952 6043..9298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5952.14441.1

>prot_L-elsbetiae_contig5952.14441.1 ID=prot_L-elsbetiae_contig5952.14441.1|Name=mRNA_L-elsbetiae_contig5952.14441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
MSAPRDEGLESAATAALLPNVEKIRNFFEIARAMEQMMPVLLRRLAELAS
IVERPLLACKLTELLQVVLEWDQLKMMRPQIQNDFATYRRFLSRLKREEE
AGLLSKLPVADTDANAISMFIAENVPMMCVLAKVTAKTAIDVPRVRSVIA
TVANMCCGMVHRRVYKSDATSRKLLMAMTSAAVLYDRITDSGVFVKRSHV
GVSKCIKVLNKHGGATGEQLRATLRYSTMHYNSETTPKNIRNALEIES*
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mRNA from alignment at L-elsbetiae_contig5952:5450..10636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5952.14441.1 ID=mRNA_L-elsbetiae_contig5952.14441.1|Name=mRNA_L-elsbetiae_contig5952.14441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5187bp|location=Sequence derived from alignment at L-elsbetiae_contig5952:5450..10636+ (Laminarionema elsbetiae ELsaHSoW15)
ATTACTCTTGTGCTGCAGAAATGTTCGGAGGCGATTCGAATAGTGCAGGA GTATGACGGCTGCGGTTCAGTCATTCGACGGGTGAGCGCTATGTAACGAA AACTATGATACAAGATCGACGTCTAAATACAGAGTTGTTGGCACTGCTGT CTGTGTAAGTATTGCCGTATGGTCGATCATTTCGATTCGTTTGTGGCATC GTTCAATTCGATGGCGCTCGTGCTTGTGCTGAATAGTGGTGTCAAATTTG ACTCATGAGACAAGGAATTTATAATCCTTCTGTTGATAAACTCGGACCGT TAGCAGCTAAAACTAATGCTGACGATCATCGACAGCAGTACCACAAGACA GACATGCGCCACACGGACACCCACCGGGGCGCAGGGCCAGAACAGAGGCG GTTGTTTTTGTGTACAACTCGCTAGCCGCTCTACGTCTTGCAATTCAGTC GTGAGGCGTAGCATCTCCTCTCTCCTCTTGGGCCAATCAATATCCGTTCC TTGCTCACCTTGCATCACCACCGTGCGTGTTTTCGTGTGCGTGTTTTTTG TATTTTTGCCGTGAAACCTGAACCTAAACCTAAACCTCAGTCGATGAGCG CACCGAGAGACGAGGGGCTGGAAAGCGCCGCCACCGCGGCCCTCTTACCG AATGTCGAAAAGATTCGGAACTTCTTCGAGATAGCACGAGCTATGGAGCA GGTGAGATTAATGGAGACGTCCAAAGTTCGATTCTGTCCCTAGATTTAGA GAGTACCGCAGGTGAACGTGGTGAAGAAAAGGGAGACAGACCAGCCGCTA TTCGCAGATGCTGACTGCAGTTTAACCGGCCGATTTGATCGTGGGCATAA AGAAAGCGCATGTAAAGCGCTCTCACTGGTTCTCTCGCAAGTTGACGTTT GCAAGTTTACATTGGACTAAATTCTAACCCTAACCACGAGATAGGCGCCA TAAATAAATCAGCGTCTTGTACCAGCATGCAGGCACGGCGTGAAATATGA TACCAGCATGCAGGCACTTTTGCAGGATTGCGGGTATGTGAAGGGCAGAG TAAATTCAAGTGCCGCCAAAAATCTGAGGCGGAGTTGGCGGAGTAAAGGT TCCATATTTTATTTCAGCAAGAGCATCCACAAATGTGTGCGCTGTTCTGC TCTTTGCTGGGTTGCACTGATTGTGTGGTGCTATCTTGCTGTGCCGTCCT GACTTACCTGTCCTGCAGATGATGCCCGTTCTGCTGAGGAGACTAGCGGA GCTTGCGTCCATCGTGGAGCGGCCGCTCTTGGCGTGTAAGCTAACGGAGC TGCTGCAGGTGGTTCTGGAGTGGGACCAACTCAAGGTACGGTCGCACCGT ACAAGCGAAGTACGGCATGCGACTGGCTGGTGGCTCTGTTGTTTGGACAG CAACGGTGGCCTGAAGCGTGATTTGAAGTGGCCGCTGTGCTCGGGCTTGA CGCGTAGCTCAAGCGCCGGCGCGCGGACACGAAAAAATGTCATGTCCCAC GAAAAACGTCATATTTATCGAGTCACCTCCTTTCCATCTTGTGCCAGCCG CTGGCGTCGAAACCCAAAATGCAGGACAACCACGTGATTCCTGTTGTAGC ATCATAGCAAAATAGAGACATCGAGCGACTGTACTGCTGCACTTCGTTGG AGGACGGAAGATCGCTGAGTGAAGCTGAGTAGGACATGCATGCGTCAAAA CACATATCTCACAACAGAATTGTGCTTGTTGCCGTCCCCTGTCTCTCAAC GTTTGATGCCAATATTGGTGTTAATGGTAGATGATGCGACCCCAGATCCA GAACGACTTCGCCACGTACCGAAGATTCTTGTCGCGCCTGAAGAGGGAGG AAGAAGCCGGCTTGTTGTCCAAGTTACCCGTGGCGGACACGGATGCTAAT GCTATCTCGATGTTCATCGCTGAGGTGCGAGCGTGCGCGCGTGTGTTGCC TGTAATCCTACGGGCGGTTGCGAGTCGAATTATTTCACCAATGGGCCCTA CCTTTTATATCATTCCATCCAGCCGTTGACATGCCCGGTTGTGTCGTTTG GTATTGATGATCAGTCTTCGCGCATAGTTTGATGCTTGTTGTGCCATGTT GACGTCATTTCGCTGTTTTATGGGCGGAGCAGGGAGGGGAGAAAAATGCG TCGCTCTAGGTCTGTCCCTGGCCTCTACGAGGTACCGTGCATAGATACAT AGCCTTGCTCACCCCCAGTGATTGTATCAAAGTTTTGAACCTTAACGATA GGAGTATAGTAGGATATAGTCGAAAACCCCGTTTGCGAGACACGTTGACA AAGGTTGGTGGGGTGGGGTGACGTTTGTCGATAAATACAGCCCTGGCGTA CCGCTTCGCCTGTCATGCCATGCACTCCATTCCCACCCACTCCACTCCAC TCCACTCCCGCCTCCTTCCACGCGCAATACTCGATACTGCTGTTGTCTTG TATTTTAATTTTCCTCTTGATGCCCTTCCTGCCCTTCGGCCCTTGCATCC TCCGCGTGTCTGCTGCACTTCTTTTTGTTTTGACCCGTGCTGTTTCCAAA ACAGAACGTGCCTATGATGTGCGTACTGGCCAAGGTGACAGCCAAGACGG CGATCGATGTACCGCGAGTGCGGAGCGTGATCGCGACAGTGGCCAACATG TGCTGCGGGATGGTGCATAGAAGAGTCTACAAGTGAGTGCGTGAGGCAAT GGACTCGCTGTTTATTTTGCGCTGGCAACAGAAGATACCTGATACTGGTA CTTGCTTTGTTTTTCGTCCACTCTCCTGAACCCCCACGGTTCCACTGTCG TGTCTGTCCCGTGTCCGACTGGGCTGGTGCCAGTTCATGCCTTCGTGGCG TGGCCATACGTCATGATGAACTTCCACGCGTTCTGTGTGCGTTGTACGGC GAGCGCGCCATAAGATCCTGTCGTAGTAAATCTGTCAACACACTGCGAGT GTCTTCACGCACCGCTTGGAGGACTCATTCGAGGATGCGGCAGGCACACT GATGTAGCTCCGCGCTCTCCCTTCCCGTATGTGCACTCCCGCAGTACCCG TGACTTCCTCTTTCTTCCGTCCGCCCGCCGCCTTCCTCATCGCCCCTTTT TTGCCACGGAACACGGAACATGATATGACACGCATACGGATATGGTGTGA CTAAGCAGGAGCGATGCTACGAGTCGGAAGTTGCTGATGGCCATGACGAG TGCGGCCGTCCTGTACGACAGAATTACCGACTCCGGCGTATTCGTGAAGA GGTCACACGTGGGGGTGAGTGCATGGGAGCGCTGGTGCAGGCTGTGTTTG ACTGACTGACGAGATACGAAGTATTTATGAAGTAGACGGCCGACACGTAC CTTGACGTCGCCGATATCTTGTACGATAGTACTTTTTTACACCTATTGTT TTGCGTTCAAAATGGTTTTGCGTTCAACGTCGAGCCAGATTGGTTGTGCG AGTTGATACTCTATTGATCATGAGGCAGCAGGTATGATCACCAAATCAAA CCGGCCGTGCTAATGTAGCTCCGTGCGGGCTTGCTGCTGCTACTTTGTAC GCTCCATGTCGGCCCTATCGGTCTTGTGGACCCTTCTTTCTCTGTCGCCC TGACTCTAGTTCTCTCGGGTCTGTCTTGGTGGGGCCATGTCATGTGATGT CACTCTGCCACATGTCATCTTGTGCCATTGCCATGTGATCCGGCGTGAGT GCCAGGTGTCGAAGTGCATAAAGGTCCTCAACAAGCACGGGGGCGCCACC GGCGAGCAGCTGCGGGCGACTCTGCGGTATTCAACGATGCACTACAACTC CGAAACTACCCCGAAAAACATTCGGAACGCCCTCGAAATCGAGAGCTAGG ACCCGTCGCCAAGCAGCGATGAACGGTTGAATGTTGAAGGGGGGACGGCA TAAGGGGTGGCCTCAGTTGAGGACTTTTGTATTTTTTTTTTTTGCCGGTG ATGTTACCGACCATTGATGCGAGTTTTTTCGGTTTTCGGCCGTGCAGGTG TGAGCGAGGAACTTCGCTGCTGTTGTGTGTGTGTGCGCGCGCGCGCGTTG ATGTTGTATTTTGGGTTGTGTGAGAGACATGTATCTTTGTGTTGCCATAC TGCTGCGGTATTTGGTTCTTTCTAGAGAGGTAGTAGAAGAGGGGCGGTCA GGGTGTCGTATTTTTTGTGCTGTGTATTGTGTTTTCCTCAAGTTTTTTGT CTATGCCGTGCTTGCCACACTTAATAGCTATCATTTGCTGTCACTTCCTC CCTCCCCGGAGGCGACCGATACCGATACAATAGATCGATCCATCGATGTG GCGATGCGTGCTTGGATCTTGACCTTTCGTTGATCTTGATCACCCCACCG GCAGAGGAGCAGGATTGAGAACTGTCTTCAACAGTAGTGTTGTATAAATA GATATGAGTTGTCGCTCGATAAAGAGTTATAGTTTTCATGTCGGAAGTGG GTTGCTCTTTTCTACTGCTGTAGTTGTTTTATGGTGTTTTTTCCGTAGGC AGGGCAGGGGTATATCCCTGGGATGCCGTGCCGACACGTGCTCTGTTGAC GTGTGGTATGGACTTTGCTCTCTATTTTTCCTTAATCTTTGAGCACCGCA GCATCTAGTCGATACTGTTTCATATTTTCAGTTGTATCGCACCAGTCAAA GTCGAAACAGGCGTTGTCTCTTGATGTGTTCGACACGGCAAGGAAGTCTG GTGGCCTGCCTTTATTTTTTTGTTCTTATAGTTGGCATGCGAGAGGCCTC TCCCTCGCTCGCCCTGAACTGCCGTCATCACACAAGTGCATTTGCTCGTG GCGGGTGTGTCTGCATCCCTGTGTGCTGCGGTTTTGTATGACCTTGGTTG GGGAGGGTTTTCGCTCTTCTGGCGAGTCCTTTTTCGGCCCCTTTTTCGAT GCGTTCCCGGGGTTGTGTGGATTTTGATGTGAGGCGCGTCTACCTGTCAC TTTATATATATTGAGAAATTATTCGACTTGTTCCTGGCGTTTTCTTCGAG GCTGTTGCCAAAAACAGCTGCTGCCTGTCTTGTCAAGTGTTCGGGTAGTG CCGCCTGTCTGTGTACACAGTAATTTGTGGGCCACTGAGGACGCCCGAGA ACGACCACATCGCACGTGATGTTTGACTGGTGTTTTCAGGCTGAATTCTA CCCCGTCCTGTAAAAGTAAGGGTGAGTTTAAAAGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5952:5450..10636+

>mRNA_L-elsbetiae_contig5952.14441.1 ID=mRNA_L-elsbetiae_contig5952.14441.1|Name=mRNA_L-elsbetiae_contig5952.14441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig5952:5450..10636+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGCACCGAGAGACGAGGGGCTGGAAAGCGCCGCCACCGCGGCCCT
CTTACCGAATGTCGAAAAGATTCGGAACTTCTTCGAGATAGCACGAGCTA
TGGAGCAGATGAGCGCACCGAGAGACGAGGGGCTGGAAAGCGCCGCCACC
GCGGCCCTCTTACCGAATGTCGAAAAGATTCGGAACTTCTTCGAGATAGC
ACGAGCTATGGAGCAGATGATGCCCGTTCTGCTGAGGAGACTAGCGGAGC
TTGCGTCCATCGTGGAGCGGCCGCTCTTGGCGTGTAAGCTAACGGAGCTG
CTGCAGGTGGTTCTGGAGTGGGACCAACTCAAGATGATGCCCGTTCTGCT
GAGGAGACTAGCGGAGCTTGCGTCCATCGTGGAGCGGCCGCTCTTGGCGT
GTAAGCTAACGGAGCTGCTGCAGGTGGTTCTGGAGTGGGACCAACTCAAG
ATGATGCGACCCCAGATCCAGAACGACTTCGCCACGTACCGAAGATTCTT
GTCGCGCCTGAAGAGGGAGGAAGAAGCCGGCTTGTTGTCCAAGTTACCCG
TGGCGGACACGGATGCTAATGCTATCTCGATGTTCATCGCTGAGATGATG
CGACCCCAGATCCAGAACGACTTCGCCACGTACCGAAGATTCTTGTCGCG
CCTGAAGAGGGAGGAAGAAGCCGGCTTGTTGTCCAAGTTACCCGTGGCGG
ACACGGATGCTAATGCTATCTCGATGTTCATCGCTGAGAACGTGCCTATG
ATGTGCGTACTGGCCAAGGTGACAGCCAAGACGGCGATCGATGTACCGCG
AGTGCGGAGCGTGATCGCGACAGTGGCCAACATGTGCTGCGGGATGGTGC
ATAGAAGAGTCTACAAAACGTGCCTATGATGTGCGTACTGGCCAAGGTGA
CAGCCAAGACGGCGATCGATGTACCGCGAGTGCGGAGCGTGATCGCGACA
GTGGCCAACATGTGCTGCGGGATGGTGCATAGAAGAGTCTACAAGAGCGA
TGCTACGAGTCGGAAGTTGCTGATGGCCATGACGAGTGCGGCCGTCCTGT
ACGACAGAATTACCGACTCCGGCGTATTCGTGAAGAGGTCACACGTGGGG
GAGCGATGCTACGAGTCGGAAGTTGCTGATGGCCATGACGAGTGCGGCCG
TCCTGTACGACAGAATTACCGACTCCGGCGTATTCGTGAAGAGGTCACAC
GTGGGGGTGTCGAAGTGCATAAAGGTCCTCAACAAGCACGGGGGCGCCAC
CGGCGAGCAGCTGCGGGCGACTCTGCGGTATTCAACGATGCACTACAACT
CCGAAACTACCCCGAAAAACATTCGGAACGCCCTCGAAATCGAGAGCTAG
GTGTCGAAGTGCATAAAGGTCCTCAACAAGCACGGGGGCGCCACCGGCGA
GCAGCTGCGGGCGACTCTGCGGTATTCAACGATGCACTACAACTCCGAAA
CTACCCCGAAAAACATTCGGAACGCCCTCGAAATCGAGAGCTAG
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