mRNA_L-elsbetiae_contig5943.14431.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5943.14431.1
Unique NamemRNA_L-elsbetiae_contig5943.14431.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5943.14431.1 vs. uniprot
Match: A0A6H5JIE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 7.990e-34
Identity = 62/114 (54.39%), Postives = 80/114 (70.18%), Query Frame = 2 
Query:   44 ANLPPDLSECEALGWSRTSA--LDWALKERFSKRKGGNGD-CAHHQRILVQNPAIYYANLSTREKGAMKEAGQHAHAAECMRTTAAPGAILLFTDTCGWTLPRGMDAAQLGKVS 376
            AN P DLS CE L W+  ++  L+WA  +RF  R   +G+     QR+L+QNPA+YY+N S REKG M+EA Q  HAAECMRTTAAPG IL F D C + +P+G++AAQLG+ S
Sbjct:    7 ANAPTDLSTCEPLDWATDNSKDLEWAW-DRFLSRPSHSGEPWTRQQRVLLQNPALYYSNQSVREKGEMQEAQQWRHAAECMRTTAAPGTILFFRDVCNFRIPKGLNAAQLGRTS 119
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BLAST of mRNA_L-elsbetiae_contig5943.14431.1 vs. uniprot
Match: A0A6H5JCW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.140e-28
Identity = 58/115 (50.43%), Postives = 70/115 (60.87%), Query Frame = 2 
Query:   44 ANLPPDLSECEAL-GWSRTSA---LDWALKERFSKRKGGNGDCAHHQRILVQNPAIYYANLSTREKGAMKEAGQHAHAAECMRTTAAPGAILLFTDTCGWTLPRGMDAAQLGKVS 376
            ANLPP LSECE +  W        + W+   RF       G   H QR L+QNPA YYAN S R+K  M+    HAHAA CMRT AAPG IL  T +CG+++P G+DA +LGKVS
Sbjct:    2 ANLPPVLSECEPIESWGADQPRQEIVWSWN-RFVAMGPRGGAWTHQQRRLLQNPAAYYANQSVRDKDDMQAPDMHAHAANCMRTFAAPGIILFLTQSCGFSMPHGLDAGELGKVS 115
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BLAST of mRNA_L-elsbetiae_contig5943.14431.1 vs. uniprot
Match: A0A6H5K062_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K062_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.550e-10
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 2 
Query:  236 MKEAGQHAHAAECMRTTAAPGAILLFTDTCGWTLPRGMDAAQLGKVS 376
            M+EA Q  HAAECMRTTAAPG IL F D C + +P+G++AAQLG+ S
Sbjct:    1 MQEAQQWRHAAECMRTTAAPGTILFFRDVCNFRIPKGLNAAQLGRTS 47
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5943.14431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JIE3_9PHAE7.990e-3454.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCW4_9PHAE4.140e-2850.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K062_9PHAE2.550e-1063.83Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5943contigL-elsbetiae_contig5943:7657..8032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.4959676-UTR-L-elsbetiae_contig5943:7656..76631622816643.4959676-UTR-L-elsbetiae_contig5943:7656..7663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5943 7657..7663 +
1691683707.2406697-UTR-L-elsbetiae_contig5943:7656..76631691683707.2406697-UTR-L-elsbetiae_contig5943:7656..7663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5943 7657..7663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.5092177-CDS-L-elsbetiae_contig5943:7663..80321622816643.5092177-CDS-L-elsbetiae_contig5943:7663..8032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5943 7664..8032 +
1691683707.2494648-CDS-L-elsbetiae_contig5943:7663..80321691683707.2494648-CDS-L-elsbetiae_contig5943:7663..8032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5943 7664..8032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5943.14431.1prot_L-elsbetiae_contig5943.14431.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5943 7664..8032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5943.14431.1

>prot_L-elsbetiae_contig5943.14431.1 ID=prot_L-elsbetiae_contig5943.14431.1|Name=mRNA_L-elsbetiae_contig5943.14431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MANPATSPREKTANLPPDLSECEALGWSRTSALDWALKERFSKRKGGNGD
CAHHQRILVQNPAIYYANLSTREKGAMKEAGQHAHAAECMRTTAAPGAIL
LFTDTCGWTLPRGMDAAQLGKVS
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mRNA from alignment at L-elsbetiae_contig5943:7657..8032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5943.14431.1 ID=mRNA_L-elsbetiae_contig5943.14431.1|Name=mRNA_L-elsbetiae_contig5943.14431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=376bp|location=Sequence derived from alignment at L-elsbetiae_contig5943:7657..8032+ (Laminarionema elsbetiae ELsaHSoW15)
CGAAACTATGGCAAACCCGGCGACTTCACCCCGTGAAAAAACGGCAAATC
TGCCCCCTGATCTGAGCGAGTGCGAAGCGCTCGGTTGGAGTAGAACTTCC
GCATTGGATTGGGCGCTTAAGGAAAGGTTCTCGAAACGCAAGGGCGGCAA
CGGTGATTGCGCACACCACCAGCGCATCCTCGTGCAAAACCCGGCCATCT
ATTACGCCAATCTTTCCACGAGGGAGAAGGGAGCGATGAAGGAAGCAGGG
CAGCACGCCCATGCTGCGGAATGTATGAGGACGACGGCGGCACCTGGGGC
TATACTGTTATTTACCGATACGTGCGGATGGACCCTCCCTCGGGGTATGG
ACGCAGCACAGCTGGGGAAAGTTTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5943:7657..8032+

>mRNA_L-elsbetiae_contig5943.14431.1 ID=mRNA_L-elsbetiae_contig5943.14431.1|Name=mRNA_L-elsbetiae_contig5943.14431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig5943:7657..8032+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAAACCCGGCGACTTCACCCCGTGAAAAAACGGCAAATCTGCCCCC
TGATCTGAGCGAGTGCGAAGCGCTCGGTTGGAGTAGAACTTCCGCATTGG
ATTGGGCGCTTAAGGAAAGGTTCTCGAAACGCAAGGGCGGCAACGGTGAT
TGCGCACACCACCAGCGCATCCTCGTGCAAAACCCGGCCATCTATTACGC
CAATCTTTCCACGAGGGAGAAGGGAGCGATGAAGGAAGCAGGGCAGCACG
CCCATGCTGCGGAATGTATGAGGACGACGGCGGCACCTGGGGCTATACTG
TTATTTACCGATACGTGCGGATGGACCCTCCCTCGGGGTATGGACGCAGC
ACAGCTGGGGAAAGTTTCCATGGCAAACCCGGCGACTTCACCCCGTGAAA
AAACGGCAAATCTGCCCCCTGATCTGAGCGAGTGCGAAGCGCTCGGTTGG
AGTAGAACTTCCGCATTGGATTGGGCGCTTAAGGAAAGGTTCTCGAAACG
CAAGGGCGGCAACGGTGATTGCGCACACCACCAGCGCATCCTCGTGCAAA
ACCCGGCCATCTATTACGCCAATCTTTCCACGAGGGAGAAGGGAGCGATG
AAGGAAGCAGGGCAGCACGCCCATGCTGCGGAATGTATGAGGACGACGGC
GGCACCTGGGGCTATACTGTTATTTACCGATACGTGCGGATGGACCCTCC
CTCGGGGTATGGACGCAGCACAGCTGGGGAAAGTTTCC
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