mRNA_L-elsbetiae_contig5941.14430.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5941.14430.1
Unique NamemRNA_L-elsbetiae_contig5941.14430.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5941.14430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5941contigL-elsbetiae_contig5941:6471..6827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.3875048-CDS-L-elsbetiae_contig5941:6470..68211622816643.3875048-CDS-L-elsbetiae_contig5941:6470..6821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5941 6471..6821 +
1691683707.2037158-CDS-L-elsbetiae_contig5941:6470..68211691683707.2037158-CDS-L-elsbetiae_contig5941:6470..6821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5941 6471..6821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.4018278-UTR-L-elsbetiae_contig5941:6821..68271622816643.4018278-UTR-L-elsbetiae_contig5941:6821..6827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5941 6822..6827 +
1691683707.215257-UTR-L-elsbetiae_contig5941:6821..68271691683707.215257-UTR-L-elsbetiae_contig5941:6821..6827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5941 6822..6827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5941.14430.1prot_L-elsbetiae_contig5941.14430.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5941 6471..6821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5941.14430.1

>prot_L-elsbetiae_contig5941.14430.1 ID=prot_L-elsbetiae_contig5941.14430.1|Name=mRNA_L-elsbetiae_contig5941.14430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
KITSGQLKSAGQLPALYCRTAQKVPAKSTGEKPNTVTLFFPPKKYRHTKH
IFETAKKVPPYCKPPKTISPYDTCTAKNSHPCSLGVVCISMGNDPCGQLW
TGFKSHYKLGWLESSL*
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mRNA from alignment at L-elsbetiae_contig5941:6471..6827+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5941.14430.1 ID=mRNA_L-elsbetiae_contig5941.14430.1|Name=mRNA_L-elsbetiae_contig5941.14430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=357bp|location=Sequence derived from alignment at L-elsbetiae_contig5941:6471..6827+ (Laminarionema elsbetiae ELsaHSoW15)
AAAATTACGAGCGGTCAACTAAAAAGTGCTGGACAACTTCCGGCACTTTA
TTGCCGAACCGCCCAAAAAGTACCGGCGAAAAGTACCGGCGAAAAACCAA
ATACTGTAACACTTTTTTTCCCGCCGAAAAAATACCGCCATACAAAACAT
ATATTTGAAACAGCCAAAAAAGTACCGCCCTATTGCAAACCGCCAAAAAC
AATTTCGCCTTATGATACATGTACCGCCAAAAATTCCCACCCATGCTCAC
TCGGCGTGGTGTGTATATCAATGGGTAACGATCCATGCGGTCAACTGTGG
ACCGGATTCAAATCCCACTACAAGCTGGGCTGGCTGGAAAGCTCACTTTA
GTTCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5941:6471..6827+

>mRNA_L-elsbetiae_contig5941.14430.1 ID=mRNA_L-elsbetiae_contig5941.14430.1|Name=mRNA_L-elsbetiae_contig5941.14430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig5941:6471..6827+ (Laminarionema elsbetiae ELsaHSoW15)
AAAATTACGAGCGGTCAACTAAAAAGTGCTGGACAACTTCCGGCACTTTA
TTGCCGAACCGCCCAAAAAGTACCGGCGAAAAGTACCGGCGAAAAACCAA
ATACTGTAACACTTTTTTTCCCGCCGAAAAAATACCGCCATACAAAACAT
ATATTTGAAACAGCCAAAAAAGTACCGCCCTATTGCAAACCGCCAAAAAC
AATTTCGCCTTATGATACATGTACCGCCAAAAATTCCCACCCATGCTCAC
TCGGCGTGGTGTGTATATCAATGGGTAACGATCCATGCGGTCAACTGTGG
ACCGGATTCAAATCCCACTACAAGCTGGGCTGGCTGGAAAGCTCACTTTA
GAAAATTACGAGCGGTCAACTAAAAAGTGCTGGACAACTTCCGGCACTTT
ATTGCCGAACCGCCCAAAAAGTACCGGCGAAAAGTACCGGCGAAAAACCA
AATACTGTAACACTTTTTTTCCCGCCGAAAAAATACCGCCATACAAAACA
TATATTTGAAACAGCCAAAAAAGTACCGCCCTATTGCAAACCGCCAAAAA
CAATTTCGCCTTATGATACATGTACCGCCAAAAATTCCCACCCATGCTCA
CTCGGCGTGGTGTGTATATCAATGGGTAACGATCCATGCGGTCAACTGTG
GACCGGATTCAAATCCCACTACAAGCTGGGCTGGCTGGAAAGCTCACTTT
AG
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