mRNA_L-elsbetiae_contig5940.14429.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig5940.14429.1
Unique Name	mRNA_L-elsbetiae_contig5940.14429.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 5.880e-34
Identity = 89/165 (53.94%), Postives = 109/165 (66.06%), Query Frame = 2

Query:  896 ASRETGTQGAAEVVDCLLRWGADETVVNADGNAAADVIGINVGEDDSSDEGLEVAEDVERMRELLTNAPADRAWRRRGYMVLCRAHPDRIQPIRESSSAT--AGVAGSTRSGTTCKLARTEASGFAGTAGGSTASERTSGDWAGLVAMALGLREEGVFRAIVGYL 1384
            A R+ G QGAAEVV+ LLR GADET+ N  GN A D+IG +V E+D       + EDVER+RELL NAPADRAWRRRGY+++CRA PDR+ P R  +S T    VA  TRS    K+AR       G AG ST  E T G+WA +V+  + L+EEG+FR IV YL
Sbjct:  250 AGRQAGRQGAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDR------LTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRV-PERRMTSGTHYTNVARRTRS--RAKMARAR-----GIAGESTVDESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400

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BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.170e-19
Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 2

Query:  911 GTQGAAEVVDCLLRWGADETVVNADGNAAADVIGINVGEDDSSDEGLEVAEDVERMRELLTNAPADRAWRRRGYMVLCRAHPDRIQPIRESSSAT--AGVAGSTRSGTTCKLARTEASGFAGTAG-GSTASERTSGDWAGLVAMALGLREEGVFRAIVGYL 1384
            G +GA EVVD LLRW ADET  +A G+   +++G    E DS      +  +V+R+ +LL  AP DRAWRRRG +VLCRAHP+R+  +R+++S    + V   TRS T  KL   E    AG +G G+ A  RT+ +W+ +V   LGL +EG+FR IVGYL
Sbjct:  251 GDEGAVEVVDLLLRWNADETDDDAYGHTPGNIVGCMTPETDS------MFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLG-LRQNASHVQESTVLRVTRSRT--KLVEREQ--VAGGSGEGAAADGRTAREWSNMVYRVLGL-DEGIFRTIVGYL 399

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BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 6.510e-18
Identity = 67/155 (43.23%), Postives = 73/155 (47.10%), Query Frame = 2

Query:  920 GAAEVVDCLLRWGADETVVNADGNAAADVIGINVGEDDSSDEGLEVAEDVERMRELLTNAPADRAWRRRGYMVLCRAHPDRIQPIRESSSATAGVAGSTRSGTTCKLARTEASGFAGTAGGSTASERTSGDWAGLVAMALGLREEGVFRAIVGYL 1384
            G+A+VVD LLRWGADET+V+  G  AAD IG                ED ER R LL  APADRAWRRRG +VLCRAHPDR+Q                                              GD AGLVA   GL E GVFR IV YL
Sbjct:  288 GSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDP-------EDDERARSLLARAPADRAWRRRGLLVLCRAHPDRLQ--------------------------------------------LGGDLAGLVAGVGGLEEVGVFRTIVLYL 391

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BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 7.450e-18
Identity = 73/173 (42.20%), Postives = 96/173 (55.49%), Query Frame = 2

Query:  905 ETGTQGAAEVVDCLLRWGADETVVNADGNAAADVIGINVGEDDSSDEGLEVAEDVERMRELLTNAPADRAWRRRGYMVLCRAH--PDRIQ-PIRESSSATAGVAGSTRSGTTCKLARTEASGFAGTAGGSTASERTSGDWAGLVAMALG-------LREEG---VFRAIVGYL 1384
            + G+ G AE+VD LLR GADET V+ +G+ AAD++ +   E DS      +AEDV+R+R+LL  APADRAWRRRG+++L RAH    R+Q   R S +  AGVA  TRS                    S    R   DWAG+V+M +G       L  +G   +F  IVGYL
Sbjct:  632 KAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDS------LAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTSQAPAAGVAKRTRS--------------------SEEPSRAEIDWAGVVSMLMGDGVDPISLMGDGANLIFEKIVGYL 778

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BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.580e-17
Identity = 64/158 (40.51%), Postives = 80/158 (50.63%), Query Frame = 2

Query:  911 GTQGAAEVVDCLLRWGADETVVNADGNAAADVIGINVGEDDSSDEGLEVAEDVERMRELLTNAPADRAWRRRGYMVLCRAHPDRIQPIRESSSATAGVAGSTRSGTTCKLARTEASGFAGTAGGSTASERTSGDWAGLVAMALGLREEGVFRAIVGYL 1384
            G QG  EVVD LLRWGADET V  +G  AAD IG+ V E+D       + E+ E +R+LL NAPADRAWRRR  +VLCRA PD++Q   +                  ++AR E                         A  LGL EEG+FR IV ++
Sbjct:  274 GKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDR------IPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQLSSD------------------RIARLE-------------------------ARVLGLVEEGIFRTIVRFI 382

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BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 5.420e-17
Identity = 62/150 (41.33%), Postives = 85/150 (56.67%), Query Frame = 2

Query:  935 VDCLLRWGADETVVNADGNAAADVIGINVGEDDSSDEGLEVAEDVERMRELLTNAPADRAWRRRGYMVLCRAHPDRIQPIRESSSATAGVAGSTRSGTTCKLARTEASGFAGTAGGSTASERTSGDWAGLVAMALGLREEGVFRAIVGYL 1384
            V+ LLRWGADET  N +G+  ADVIG+     D +DE  +V  D +R+R +L  APADR+WRRRG++VL R+ P R+Q   + S          R+    K+AR       G      A  + + DW GLV   LGL  +G+FR +VG+L
Sbjct:  367 VELLLRWGADETCSNDNGDVPADVIGV-YDRGDVNDE--DVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQIANKGSRVN-------RNSCPAKVARVSGEDLGGDE--EEAENQMTVDWGGLVGSLLGLEADGLFRLVVGFL 504

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BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.970e-16
Identity = 69/165 (41.82%), Postives = 95/165 (57.58%), Query Frame = 2

Query:  896 ASRETGTQGAAEVVDCLLRWGADETVVNADGNAAADVIG--INVGEDDSSDEGLEVAEDVERMRELLTNAPADRAWRRRGYMVLCRAHPDRIQPIRESSSATAGVAGSTRSGTTCKLARTEASGFAGTAGGSTASERTSGDWAGLVAMALGLREEGVFRAIVGYL 1384
            A+   G QG+AE+VD LLR GADET  + +G   AD +G  + +G+       + +  +V  + ELL NAPADRAWRRRG +VLCRA   R +  +E    T G   S R+ +  KLAR++A G AG   G T    T  +W       + L EEG+FR++VG+L
Sbjct:  268 AASYAGRQGSAELVDLLLRRGADETTPDRNGQQPADRVGHCMELGD-------VLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGL-SRRTRSRAKLARSDAVG-AGCRRG-TPEGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422

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BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 6.770e-16
Identity = 65/156 (41.67%), Postives = 74/156 (47.44%), Query Frame = 2

Query:  917 QGAAEVVDCLLRWGADETVVNADGNAAADVIGINVGEDDSSDEGLEVAEDVERMRELLTNAPADRAWRRRGYMVLCRAHPDRIQPIRESSSATAGVAGSTRSGTTCKLARTEASGFAGTAGGSTASERTSGDWAGLVAMALGLREEGVFRAIVGYL 1384
            +G+ +VV  LLRWGADET+V   G  AAD IG       S++ G     D ER R LLT APADRAWRRRG +VLC A+PDR+Q                                              GD AGLV   LGL E GVFR IV YL
Sbjct:  283 RGSVQVVGLLLRWGADETIVCKQGKTAADRIGTR--RFPSTEPG-----DDERARSLLTRAPADRAWRRRGLLVLCHAYPDRLQ--------------------------------------------LGGDLAGLVDRVLGLEEVGVFRTIVLYL 387

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BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 9.860e-16
Identity = 61/157 (38.85%), Postives = 92/157 (58.60%), Query Frame = 2

Query:  926 AEVVDCLLRWGADETVVNADGNAAADVIG-----INVGEDDSSDEGLEVAEDVERMRELLTNAPADRAWRRRGYMVLCRAHPDRIQPIRESSSATAGVAGSTRSGTTCKLART--EASGFAGTAGGSTASERTSGDWAGLVAMALGLREEGVFRAIV 1375
            A  VD LLRWGAD+T+V+ +G  AAD +G     ++  EDD S +  ++  D +R R +L  AP DR WRRRG++VLCR++P ++Q +++SSS+++G +       T K AR   E SG  G   G    +    +   LV   +GL+ + VFR +V
Sbjct:  417 AAAVDLLLRWGADDTIVDGEGETAADEVGTWDPEVHSNEDDGSIDDDKLKADGQRTRLILACAPVDRLWRRRGWLVLCRSYPTKVQILKDSSSSSSGCS-------TAKAARVSEEDSGECGDEDG----DEARIELGRLVGHIVGLQADVVFRMVV 562

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BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.410e-15
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 2

Query:  896 ASRETGTQGAAEVVDCLLRWGADETVVNADGNAAADVIGINVGEDDSSDEGLEVA------EDVERMRELLTNAPADRAWRRRGYMVLCRAHPDRIQPIRESSSATAGV 1204
            A+R+ G QG   +VD LLR GADET +N DG  AA+V+G ++          E A      +D+ER+R+LL NAPADRAWRRRG +VLCRA   + + +R +SS+  G+
Sbjct:  261 AARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHI----------EYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAFWIKSRRLRAASSSARGI 359

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5940.14429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KXK5_9PHAE	5.880e-34	53.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G981_ECTSI	1.170e-19	45.96	Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si...	[more]
D7G1U1_ECTSI	6.510e-18	43.23	Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo...	[more]
A0A6H5JHY9_9PHAE	7.450e-18	42.20	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FKL4_ECTSI	4.580e-17	40.51	Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28...	[more]
D8LB27_ECTSI	5.420e-17	41.33	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FYD0_ECTSI	2.970e-16	41.82	Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28...	[more]
D7G137_ECTSI	6.770e-16	41.67	Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo...	[more]
D7G692_ECTSI	9.860e-16	38.85	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KNU3_9PHAE	1.410e-15	46.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5940	contig	L-elsbetiae_contig5940:474..5027 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	102.4
Seed ortholog evalue	4.7e-19
Seed eggNOG ortholog	2880.D7G981
KEGG ko	ko:K21440
Hectar predicted targeting category	other localisation
GOs	GO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.	response to abiotic stimulus
EggNOG OGs	COG0666@1,KOG4177@2759
COG Functional cat.	G
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04131
Exons	2
Model size	2321
Cds size	1149
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5940.14429.1	prot_L-elsbetiae_contig5940.14429.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig5940 712..1860 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816643.3028507-UTR-L-elsbetiae_contig5940:473..711	1622816643.3028507-UTR-L-elsbetiae_contig5940:473..711	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig5940 474..711 +
1691683707.1616495-UTR-L-elsbetiae_contig5940:473..711	1691683707.1616495-UTR-L-elsbetiae_contig5940:473..711	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig5940 474..711 +
1622816643.3322587-UTR-L-elsbetiae_contig5940:1860..1866	1622816643.3322587-UTR-L-elsbetiae_contig5940:1860..1866	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig5940 1861..1866 +
1691683707.1842422-UTR-L-elsbetiae_contig5940:1860..1866	1691683707.1842422-UTR-L-elsbetiae_contig5940:1860..1866	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig5940 1861..1866 +
1622816643.3468895-UTR-L-elsbetiae_contig5940:4099..5027	1622816643.3468895-UTR-L-elsbetiae_contig5940:4099..5027	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig5940 4100..5027 +
1691683707.19396-UTR-L-elsbetiae_contig5940:4099..5027	1691683707.19396-UTR-L-elsbetiae_contig5940:4099..5027	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig5940 4100..5027 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816643.3183942-CDS-L-elsbetiae_contig5940:711..1860	1622816643.3183942-CDS-L-elsbetiae_contig5940:711..1860	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5940 712..1860 +
1691683707.1751084-CDS-L-elsbetiae_contig5940:711..1860	1691683707.1751084-CDS-L-elsbetiae_contig5940:711..1860	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5940 712..1860 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig5940:474..5027+
coding sequence from alignment at L-elsbetiae_contig5940:474..5027+

protein sequence of mRNA_L-elsbetiae_contig5940.14429.1

>prot_L-elsbetiae_contig5940.14429.1 ID=prot_L-elsbetiae_contig5940.14429.1|Name=mRNA_L-elsbetiae_contig5940.14429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=383bp
MPRTKTGRGRSGDGKALHAAVLGGHEEIVNDLLERGASVAAKDTDDRTPL
HVAAQGGKPTMVQLLMLRGADKDALDRTECTPLYLALCNGHVATALALLA
GDADASLPCSPFRDSVVHVAARLGHVEILRAVIAHGADVEATDFPARRTA
LHCAAMNNTAEAIDLLVGAGASIAARDQIGRTPLHFAATTASLEVLLALL
KHGADVNAQDSDRETPLHCASRETGTQGAAEVVDCLLRWGADETVVNADG
NAAADVIGINVGEDDSSDEGLEVAEDVERMRELLTNAPADRAWRRRGYMV
LCRAHPDRIQPIRESSSATAGVAGSTRSGTTCKLARTEASGFAGTAGGST
ASERTSGDWAGLVAMALGLREEGVFRAIVGYL*

mRNA from alignment at L-elsbetiae_contig5940:474..5027+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig5940.14429.1 ID=mRNA_L-elsbetiae_contig5940.14429.1|Name=mRNA_L-elsbetiae_contig5940.14429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4554bp|location=Sequence derived from alignment at L-elsbetiae_contig5940:474..5027+ (Laminarionema elsbetiae ELsaHSoW15)
GGACTGTGGCTGGTTCATGCTCGACACCCTCTGCTCTCCTAAAGACGAAG
GCCAACATCTACATACTTCCGCAGCAGACACGTGGCAGCAGCCCCTTATG
GTCAAACCGGGAGGGACGAGAAGCACTTCGAGGAGCAGAGGAAGGAGCGT
TTGACCTCATTGCTCAAGCCTTGACGCCAGAAGAGTAGGCGGGACTGCTG
AGTGTTCCACTCGAGCGTACCGCGCGCCAAGGCAACAGATGCCCCGTACA
AAAACTGGTCGAGGCAGGAGCGGGGACGGTAAGGCCCTGCATGCAGCCGT
TCTAGGCGGCCATGAAGAGATCGTGAATGACCTACTGGAACGTGGAGCAT
CTGTCGCTGCCAAAGACACGGATGACAGAACCCCTCTACACGTTGCTGCT
CAAGGAGGGAAACCGACGATGGTGCAGTTGCTGATGCTCAGGGGAGCTGA
CAAAGACGCGTTGGACAGGACCGAATGTACGCCTCTTTATCTGGCATTGT
GCAACGGTCACGTGGCTACCGCACTAGCTCTTCTGGCTGGTGACGCGGAC
GCCAGCCTCCCTTGCAGCCCTTTCAGAGATTCGGTGGTCCACGTGGCGGC
CCGACTGGGCCATGTGGAGATATTGAGGGCGGTGATCGCACACGGGGCGG
ACGTCGAGGCTACTGACTTTCCAGCAAGAAGAACGGCACTCCATTGTGCC
GCCATGAACAACACGGCCGAGGCGATCGATCTGCTCGTGGGCGCTGGGGC
CAGCATCGCGGCACGCGATCAAATCGGCCGTACACCTCTCCATTTTGCTG
CCACCACAGCCAGTCTCGAAGTCTTGTTGGCCCTGTTGAAGCATGGTGCT
GACGTCAACGCCCAAGACAGCGACCGAGAAACGCCGTTGCACTGTGCATC
ACGCGAAACCGGGACGCAAGGAGCTGCAGAGGTGGTGGACTGTCTGTTGA
GGTGGGGTGCGGACGAGACCGTTGTCAATGCCGATGGCAACGCGGCTGCA
GACGTGATCGGGATTAACGTGGGAGAAGATGACAGCAGTGACGAAGGCCT
AGAAGTTGCGGAGGATGTCGAGCGTATGCGTGAGCTGTTGACCAACGCCC
CGGCCGACAGAGCATGGCGTCGCCGGGGCTACATGGTTTTGTGCCGTGCT
CATCCCGACAGGATACAGCCCATACGGGAGAGCAGCAGTGCAACTGCCGG
TGTGGCAGGGAGTACTCGCAGCGGTACTACATGCAAGCTGGCAAGGACAG
AAGCGAGTGGTTTCGCTGGGACAGCGGGGGGTAGCACGGCGAGCGAACGG
ACAAGCGGCGACTGGGCCGGTTTGGTGGCGATGGCGCTGGGACTGCGGGA
AGAAGGTGTCTTTCGGGCGATCGTCGGGTATCTGTGACGCCTGGTGAGTG
CGCGTTATGTGGACATTAATTAGGCCATCACTTTGCAAGACAAACATCTC
GTATGTTCCCGTAGATATGCGCATCAGCTTGGGGCTACGCCTTAGTATGT
TTGCAACCGATATTGCAACATCCAGCATGCCATATTTAGGCGCGATAAAC
GAGTGCGTCCATTGTGTTTTGTCCACTCCTCGGAATATCACGTGAAACGA
CGCTATGCCGGTGATTCATACCCGCAGTTCTTGGTTTCGGCTGAACCACT
CCCCGATTGCCCACTGAAATCCGTATTCTCTTTTGTACCACTCAGAGTCT
GCGGCACGTTCTGATTTAGTCCTGGCCGCGACCAGAGGTGCTGAAATCCG
ACCCACTAAGTCTACTGAATTTGGTATCACCGCCGTGTATACAAAATATC
ACACTCTGTTGGCGATGTTTGGTGTGGCTAGACGATAACAGCCGGGTGAG
GCCAGCACTGTCGGCGAGGGTTAGCTCGCTGGTGTGTGCGTGTGAGCTTG
TGGGTCGAAAATGGTTTGCTGGTGACTCCTGGCCAGGCTTTGTTGATTGG
TGGTGGATGGTTGAGAGAGGGCAGGGCTCGCTGGCCTGCTCTCGCTCTCG
AAAATAAAATAAAACAATATCCAAGGGAGACCCTAACGTACCAATCTCTC
ACGGACCCCGGAAAGCTGGTCTATTCGGGGCAATTCACCCGAGATACTGT
CTGCGGTTATGCCGTGTATTCTGAACCGGCACTACTGCGCCGCAGCGCGG
TTTTGCTGATGCCAACCTTCTGGCTAATCGAACGTTGACTAGTCAGCGAC
AGCGAACAAACAAGGGCTCATTGCGATGCTGTCATTGTGTTGCCTGCTGC
ACGGAGCAACCTACGACGCATGGCCAATATCCCTGACACACTCTGGTCCG
TAATATAAGCCCTACGGAAAAATTGCAATATATACCCCATGCGGAAAAGT
GAGACACAAAAGGGCAACTTTAAGCAACTTGGAAGACTCTGAGTTGCTTG
TTTCAAAACAATACGACCCGGGGGTTAGTGGAGCAAAACAAATCATAAAT
TGGCAGGGGACACCCGGACGTTGTCCCCGGGTTTCTCCACTAGACTTGGG
AAAATTCGAAAATTCCACGTTTTCCTCCATAACTTCTAGTTGGCGAGGAC
TGCCTTCACACGATGTTTTGCCTCGGATTTGGAGCTCTCACGCCGATCTC
TCAAAACACGCCATATTTTGTGTCTTTCAAAGTTGCCAATTCTCGCCGCC
AATTCTCCCCGAAGTCTCTCTTTGCCAGCAGCCCCTGATTGTTACCCTCC
AGGAGGTCGCACATGGGGTGGTGCCGGAAATATACATTCAAACGGTTTAT
CTTTGATGTTTCGGAAGCACTTTCAGCACTAGAAATGCCCTTTACACTTC
GAGGAGGCCTCGATGGGGCACTACTGTATGCGCGCGGCGAGTCTGGTTAC
CGCAAATTTGGTACTGTTGTGTGCCGGTAGGACTGCGATTTTTATGTATT
TTAATGCCATTTGGAGAATTAGATGAGAGTAGCCTGAAATCGATGCAAAA
GTACTTTTCAAAAACTATTTAGACTATTGTATGTATATGTATGTTGTCTT
CACATTAAAAACCGTTCCGATCTCTCCATCCAGTACCTCTCAATGTCCGT
ACTAATCCAACACTTGATGCGGTCAATTCCCGTGGTCATAGGCTAACTTA
TACCCAAGAAAAGGTACACGAAAAATAAAATCGACCCGAAGGGCCAGCAA
AGCAATAATAAAACAGACATCGAATCTGGAGCCCTTCGCTCCCCTCTACA
CGCTATGTGAGGTAGAACAAAACTGGAACAGCCAACACCACTATCTTGGT
ACCCTACCAAAGCCGGGGGGTTCCGCGCCTGGTTCTTACCGGCCAGGCCC
GACAGGTCTACATAGTCCTCCCCCCGATTATCCCGCCCACCAACAGGGGA
TACAAAGAATAAAATATACTGTTAGCAGAATTTATTACCACAAATGTCCG
TACGGGGCTTTGATTGCGGACTAGAAGGGTATGTATTTAGTGGTTCGGCG
CCAAGTATGTAGTGTCTCAAAGGCTGTCGGTTTTTGTTCTTGACCGTAGG
CGAAACTCTACAAAACTCACGATTTTCCATCCCGACGAGGGAATGTGGGG
ATATGCTCACAATAGTCTTCTACCCTGCCTCCCTGCCCACCCGCTCACTT
CTCTGTGCTTCCGCCGTCGCCCGCAGGGCCTCGAACCCAGTGAGAGGACG
GTACGCGCGGCTACTCGGAGCATCTCGAGTGCATGGGGCGTAGGTTTCGT
GACCCACAGGTGGTTGACAGGCCCTTGGTGGACTCCGCGGTTCGTCGGCG
GCCATTTCGAGATTATAGTACCTGTGCCCATCAATCATAGTGCGGTAGTT
CTGTAGCCAAGGTATCACCGGAGTCCGAGTGACGCGTACGCATAGTCTGA
CAGCCAGGTCGATTCTCGCATGAGCTTTTGGGCGACGTTTTGGGCTTTGA
CATCCGTCACTTTACTAGGTCGTTTCCCGAAGTTTGGGACGGGTGGGGAT
GTGCCCGCAGAGGACAGAGCTATGTATGGGTTGTACGTTTGAGAACCATG
CAGGAGCCGCCTTAGAGCGAGGCAGTGTGAGAACCGTGCATAGCAATAAG
TAGAACAGCAGTTGTGCGGGGAGACAGAGGTCCCCACCCCGGACGAGTCT
CGCCGAGGGTGACCCTACGACCTGCTGTTGCTCCCGATCGAGCCTCAACA
GCAGGCCTAAGGGCAACCCGATGAGCTGTTTCGGGAATTGAAGCTTCGCG
CGTTGGATCTGTTGCAGCAGAGCAGTCGTGAGGCATCGCGTGCGCTCAGG
GCAAGGATCGAATCCATCCGACGTCCATGGAGCAGAAATATTCGTTGTGG
ATCTTCGGGTGGAGGTGGTGTCAGGTCTGCCCGGGGTTGGCCCTTGGGCC
AACACATGTTATCAGTCGTTTTTGCTGGGCAGGTCCTCGTGTATTTAGGT
GGTTTTCCTTGCGATCATCTTGGTTAAATAGTGATGGTGGTGGCGGTGGT
AGTGACATCTCTAGGAGGGGGTACGAGATACGAGGCGTAAACTTGTGCGG
TAGGTGTGGGTTTGGTTGTCTCATGCGTCTCGGAGGACGTGAAACGATAG
AACG

Coding sequence (CDS) from alignment at L-elsbetiae_contig5940:474..5027+

>mRNA_L-elsbetiae_contig5940.14429.1 ID=mRNA_L-elsbetiae_contig5940.14429.1|Name=mRNA_L-elsbetiae_contig5940.14429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2298bp|location=Sequence derived from alignment at L-elsbetiae_contig5940:474..5027+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCGTACAAAAACTGGTCGAGGCAGGAGCGGGGACGGTAAGGCCCT
GCATGCAGCCGTTCTAGGCGGCCATGAAGAGATCGTGAATGACCTACTGG
AACGTGGAGCATCTGTCGCTGCCAAAGACACGGATGACAGAACCCCTCTA
CACGTTGCTGCTCAAGGAGGGAAACCGACGATGGTGCAGTTGCTGATGCT
CAGGGGAGCTGACAAAGACGCGTTGGACAGGACCGAATGTACGCCTCTTT
ATCTGGCATTGTGCAACGGTCACGTGGCTACCGCACTAGCTCTTCTGGCT
GGTGACGCGGACGCCAGCCTCCCTTGCAGCCCTTTCAGAGATTCGGTGGT
CCACGTGGCGGCCCGACTGGGCCATGTGGAGATATTGAGGGCGGTGATCG
CACACGGGGCGGACGTCGAGGCTACTGACTTTCCAGCAAGAAGAACGGCA
CTCCATTGTGCCGCCATGAACAACACGGCCGAGGCGATCGATCTGCTCGT
GGGCGCTGGGGCCAGCATCGCGGCACGCGATCAAATCGGCCGTACACCTC
TCCATTTTGCTGCCACCACAGCCAGTCTCGAAGTCTTGTTGGCCCTGTTG
AAGCATGGTGCTGACGTCAACGCCCAAGACAGCGACCGAGAAACGCCGTT
GCACTGTGCATCACGCGAAACCGGGACGCAAGGAGCTGCAGAGGTGGTGG
ACTGTCTGTTGAGGTGGGGTGCGGACGAGACCGTTGTCAATGCCGATGGC
AACGCGGCTGCAGACGTGATCGGGATTAACGTGGGAGAAGATGACAGCAG
TGACGAAGGCCTAGAAGTTGCGGAGGATGTCGAGCGTATGCGTGAGCTGT
TGACCAACGCCCCGGCCGACAGAGCATGGCGTCGCCGGGGCTACATGGTT
TTGTGCCGTGCTCATCCCGACAGGATACAGCCCATACGGGAGAGCAGCAG
TGCAACTGCCGGTGTGGCAGGGAGTACTCGCAGCGGTACTACATGCAAGC
TGGCAAGGACAGAAGCGAGTGGTTTCGCTGGGACAGCGGGGGGTAGCACG
GCGAGCGAACGGACAAGCGGCGACTGGGCCGGTTTGGTGGCGATGGCGCT
GGGACTGCGGGAAGAAGGTGTCTTTCGGGCGATCGTCGGGTATCTGTGAA
TGCCCCGTACAAAAACTGGTCGAGGCAGGAGCGGGGACGGTAAGGCCCTG
CATGCAGCCGTTCTAGGCGGCCATGAAGAGATCGTGAATGACCTACTGGA
ACGTGGAGCATCTGTCGCTGCCAAAGACACGGATGACAGAACCCCTCTAC
ACGTTGCTGCTCAAGGAGGGAAACCGACGATGGTGCAGTTGCTGATGCTC
AGGGGAGCTGACAAAGACGCGTTGGACAGGACCGAATGTACGCCTCTTTA
TCTGGCATTGTGCAACGGTCACGTGGCTACCGCACTAGCTCTTCTGGCTG
GTGACGCGGACGCCAGCCTCCCTTGCAGCCCTTTCAGAGATTCGGTGGTC
CACGTGGCGGCCCGACTGGGCCATGTGGAGATATTGAGGGCGGTGATCGC
ACACGGGGCGGACGTCGAGGCTACTGACTTTCCAGCAAGAAGAACGGCAC
TCCATTGTGCCGCCATGAACAACACGGCCGAGGCGATCGATCTGCTCGTG
GGCGCTGGGGCCAGCATCGCGGCACGCGATCAAATCGGCCGTACACCTCT
CCATTTTGCTGCCACCACAGCCAGTCTCGAAGTCTTGTTGGCCCTGTTGA
AGCATGGTGCTGACGTCAACGCCCAAGACAGCGACCGAGAAACGCCGTTG
CACTGTGCATCACGCGAAACCGGGACGCAAGGAGCTGCAGAGGTGGTGGA
CTGTCTGTTGAGGTGGGGTGCGGACGAGACCGTTGTCAATGCCGATGGCA
ACGCGGCTGCAGACGTGATCGGGATTAACGTGGGAGAAGATGACAGCAGT
GACGAAGGCCTAGAAGTTGCGGAGGATGTCGAGCGTATGCGTGAGCTGTT
GACCAACGCCCCGGCCGACAGAGCATGGCGTCGCCGGGGCTACATGGTTT
TGTGCCGTGCTCATCCCGACAGGATACAGCCCATACGGGAGAGCAGCAGT
GCAACTGCCGGTGTGGCAGGGAGTACTCGCAGCGGTACTACATGCAAGCT
GGCAAGGACAGAAGCGAGTGGTTTCGCTGGGACAGCGGGGGGTAGCACGG
CGAGCGAACGGACAAGCGGCGACTGGGCCGGTTTGGTGGCGATGGCGCTG
GGACTGCGGGAAGAAGGTGTCTTTCGGGCGATCGTCGGGTATCTGTGA