mRNA_L-elsbetiae_contig594.14428.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig594.14428.1
Unique NamemRNA_L-elsbetiae_contig594.14428.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig594.14428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig594contigL-elsbetiae_contig594:34616..35279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size664
Cds size621
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.9001138-UTR-L-elsbetiae_contig594:34615..346581622816642.9001138-UTR-L-elsbetiae_contig594:34615..34658Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig594 34616..34658 +
1691683706.891858-UTR-L-elsbetiae_contig594:34615..346581691683706.891858-UTR-L-elsbetiae_contig594:34615..34658Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig594 34616..34658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.9125915-CDS-L-elsbetiae_contig594:34658..352791622816642.9125915-CDS-L-elsbetiae_contig594:34658..35279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig594 34659..35279 +
1691683706.9010074-CDS-L-elsbetiae_contig594:34658..352791691683706.9010074-CDS-L-elsbetiae_contig594:34658..35279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig594 34659..35279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig594.14428.1prot_L-elsbetiae_contig594.14428.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig594 34659..35279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig594.14428.1

>prot_L-elsbetiae_contig594.14428.1 ID=prot_L-elsbetiae_contig594.14428.1|Name=mRNA_L-elsbetiae_contig594.14428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
MSRIGMIPSNAYDLRVLRASKGGNRPACVESHATASRAPNNTRDADDAVL
KERRVSLNSKQTLQLLNRAAAAETLRAATPPRRYQGVRLYAGPTVRTAGT
WEARFDSPGPQAYNEGDKWREKFRNVPSTCIDIAKCARHMPVLTKPGPGD
YNIAHHSVGDNPGGIKFGTLAPGKKYPPRTPDHPRAEIPCSYAEPEHVSC
LHHQSTS
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mRNA from alignment at L-elsbetiae_contig594:34616..35279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig594.14428.1 ID=mRNA_L-elsbetiae_contig594.14428.1|Name=mRNA_L-elsbetiae_contig594.14428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=664bp|location=Sequence derived from alignment at L-elsbetiae_contig594:34616..35279+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGAGGAAGGGGAGAGCGGCGAAAGCGTATAGATGATTCTCCATGTCTC
GCATCGGTATGATCCCCTCCAACGCTTACGATTTGCGAGTACTCCGTGCT
TCGAAGGGAGGCAACCGGCCAGCTTGTGTCGAGTCGCACGCGACAGCATC
AAGAGCACCGAACAACACCCGAGATGCTGATGATGCTGTCCTAAAGGAAC
GAAGAGTTTCCCTGAATAGCAAGCAAACTCTTCAGTTGCTCAATCGGGCT
GCCGCCGCAGAGACTCTCCGCGCAGCAACACCTCCTAGACGGTATCAGGG
GGTCCGTCTGTACGCGGGCCCAACCGTCAGAACGGCCGGCACCTGGGAAG
CTCGGTTCGACAGTCCCGGCCCGCAGGCGTACAACGAGGGCGACAAATGG
CGAGAGAAATTCCGGAACGTGCCTTCGACGTGCATTGACATTGCCAAGTG
TGCGCGGCATATGCCCGTGCTGACGAAACCAGGGCCTGGCGATTACAACA
TCGCTCATCATTCGGTAGGAGACAACCCGGGCGGCATAAAGTTCGGCACT
CTTGCGCCAGGGAAGAAGTACCCACCGAGAACCCCGGATCATCCGCGAGC
GGAAATCCCGTGCTCCTACGCCGAGCCTGAGCATGTATCGTGCCTTCACC
ACCAGTCGACATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig594:34616..35279+

>mRNA_L-elsbetiae_contig594.14428.1 ID=mRNA_L-elsbetiae_contig594.14428.1|Name=mRNA_L-elsbetiae_contig594.14428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig594:34616..35279+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCGCATCGGTATGATCCCCTCCAACGCTTACGATTTGCGAGTACT
CCGTGCTTCGAAGGGAGGCAACCGGCCAGCTTGTGTCGAGTCGCACGCGA
CAGCATCAAGAGCACCGAACAACACCCGAGATGCTGATGATGCTGTCCTA
AAGGAACGAAGAGTTTCCCTGAATAGCAAGCAAACTCTTCAGTTGCTCAA
TCGGGCTGCCGCCGCAGAGACTCTCCGCGCAGCAACACCTCCTAGACGGT
ATCAGGGGGTCCGTCTGTACGCGGGCCCAACCGTCAGAACGGCCGGCACC
TGGGAAGCTCGGTTCGACAGTCCCGGCCCGCAGGCGTACAACGAGGGCGA
CAAATGGCGAGAGAAATTCCGGAACGTGCCTTCGACGTGCATTGACATTG
CCAAGTGTGCGCGGCATATGCCCGTGCTGACGAAACCAGGGCCTGGCGAT
TACAACATCGCTCATCATTCGGTAGGAGACAACCCGGGCGGCATAAAGTT
CGGCACTCTTGCGCCAGGGAAGAAGTACCCACCGAGAACCCCGGATCATC
CGCGAGCGGAAATCCCGTGCTCCTACGCCGAGCCTGAGCATGTATCGTGC
CTTCACCACCAGTCGACATCGATGTCTCGCATCGGTATGATCCCCTCCAA
CGCTTACGATTTGCGAGTACTCCGTGCTTCGAAGGGAGGCAACCGGCCAG
CTTGTGTCGAGTCGCACGCGACAGCATCAAGAGCACCGAACAACACCCGA
GATGCTGATGATGCTGTCCTAAAGGAACGAAGAGTTTCCCTGAATAGCAA
GCAAACTCTTCAGTTGCTCAATCGGGCTGCCGCCGCAGAGACTCTCCGCG
CAGCAACACCTCCTAGACGGTATCAGGGGGTCCGTCTGTACGCGGGCCCA
ACCGTCAGAACGGCCGGCACCTGGGAAGCTCGGTTCGACAGTCCCGGCCC
GCAGGCGTACAACGAGGGCGACAAATGGCGAGAGAAATTCCGGAACGTGC
CTTCGACGTGCATTGACATTGCCAAGTGTGCGCGGCATATGCCCGTGCTG
ACGAAACCAGGGCCTGGCGATTACAACATCGCTCATCATTCGGTAGGAGA
CAACCCGGGCGGCATAAAGTTCGGCACTCTTGCGCCAGGGAAGAAGTACC
CACCGAGAACCCCGGATCATCCGCGAGCGGAAATCCCGTGCTCCTACGCC
GAGCCTGAGCATGTATCGTGCCTTCACCACCAGTCGACATCG
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