mRNA_L-elsbetiae_contig5939.14423.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5939.14423.1
Unique NamemRNA_L-elsbetiae_contig5939.14423.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5939.14423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5939contigL-elsbetiae_contig5939:9158..9518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size362
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.8586228-CDS-L-elsbetiae_contig5939:9157..95171622816642.8586228-CDS-L-elsbetiae_contig5939:9157..9517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5939 9158..9517 +
1691683706.8740213-CDS-L-elsbetiae_contig5939:9157..95171691683706.8740213-CDS-L-elsbetiae_contig5939:9157..9517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5939 9158..9517 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.8695872-UTR-L-elsbetiae_contig5939:9517..95181622816642.8695872-UTR-L-elsbetiae_contig5939:9517..9518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5939 9518..9518 +
1691683706.8832078-UTR-L-elsbetiae_contig5939:9517..95181691683706.8832078-UTR-L-elsbetiae_contig5939:9517..9518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5939 9518..9518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5939.14423.1prot_L-elsbetiae_contig5939.14423.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5939 9158..9517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5939.14423.1

>prot_L-elsbetiae_contig5939.14423.1 ID=prot_L-elsbetiae_contig5939.14423.1|Name=mRNA_L-elsbetiae_contig5939.14423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
AICVRGRLGSLKRQKEEGPVVLCSGVWRACCSDDARSCSVENTSLLTLRI
DLRNPPSGNIQYAFQVVFSRGSAQAFRHHASQSQHTYFSCRFHLPSACPQ
LCPWCSVTPNPQPEPLRSP*
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mRNA from alignment at L-elsbetiae_contig5939:9158..9518+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5939.14423.1 ID=mRNA_L-elsbetiae_contig5939.14423.1|Name=mRNA_L-elsbetiae_contig5939.14423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=361bp|location=Sequence derived from alignment at L-elsbetiae_contig5939:9158..9518+ (Laminarionema elsbetiae ELsaHSoW15)
GCAATCTGTGTGAGAGGTCGGCTGGGCTCTCTAAAGAGGCAAAAAGAGGA
AGGTCCGGTTGTTCTGTGCTCTGGTGTGTGGCGTGCCTGTTGTTCGGACG
ACGCTCGGTCGTGTTCCGTAGAAAATACATCTCTACTTACTCTGCGCATA
GATCTGCGTAACCCCCCATCAGGAAACATACAATACGCGTTTCAAGTGGT
CTTCAGTCGAGGCTCTGCTCAAGCTTTCCGCCACCACGCGTCGCAGTCCC
AACATACGTATTTTTCTTGCCGTTTCCATCTTCCATCTGCTTGTCCCCAG
CTTTGTCCCTGGTGCTCGGTGACGCCAAATCCCCAACCCGAACCCCTGCG
CTCCCCTTGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5939:9158..9518+

>mRNA_L-elsbetiae_contig5939.14423.1 ID=mRNA_L-elsbetiae_contig5939.14423.1|Name=mRNA_L-elsbetiae_contig5939.14423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig5939:9158..9518+ (Laminarionema elsbetiae ELsaHSoW15)
GCAATCTGTGTGAGAGGTCGGCTGGGCTCTCTAAAGAGGCAAAAAGAGGA
AGGTCCGGTTGTTCTGTGCTCTGGTGTGTGGCGTGCCTGTTGTTCGGACG
ACGCTCGGTCGTGTTCCGTAGAAAATACATCTCTACTTACTCTGCGCATA
GATCTGCGTAACCCCCCATCAGGAAACATACAATACGCGTTTCAAGTGGT
CTTCAGTCGAGGCTCTGCTCAAGCTTTCCGCCACCACGCGTCGCAGTCCC
AACATACGTATTTTTCTTGCCGTTTCCATCTTCCATCTGCTTGTCCCCAG
CTTTGTCCCTGGTGCTCGGTGACGCCAAATCCCCAACCCGAACCCCTGCG
CTCCCCTTGAGCAATCTGTGTGAGAGGTCGGCTGGGCTCTCTAAAGAGGC
AAAAAGAGGAAGGTCCGGTTGTTCTGTGCTCTGGTGTGTGGCGTGCCTGT
TGTTCGGACGACGCTCGGTCGTGTTCCGTAGAAAATACATCTCTACTTAC
TCTGCGCATAGATCTGCGTAACCCCCCATCAGGAAACATACAATACGCGT
TTCAAGTGGTCTTCAGTCGAGGCTCTGCTCAAGCTTTCCGCCACCACGCG
TCGCAGTCCCAACATACGTATTTTTCTTGCCGTTTCCATCTTCCATCTGC
TTGTCCCCAGCTTTGTCCCTGGTGCTCGGTGACGCCAAATCCCCAACCCG
AACCCCTGCGCTCCCCTTGA
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