mRNA_L-elsbetiae_contig5937.14421.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5937.14421.1
Unique NamemRNA_L-elsbetiae_contig5937.14421.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5937.14421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5937contigL-elsbetiae_contig5937:7381..8933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size368
Cds size351
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5937.14421.1prot_L-elsbetiae_contig5937.14421.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5937 7397..8933 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.6604419-UTR-L-elsbetiae_contig5937:7380..73961622816642.6604419-UTR-L-elsbetiae_contig5937:7380..7396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5937 7381..7396 -
1691683706.7671728-UTR-L-elsbetiae_contig5937:7380..73961691683706.7671728-UTR-L-elsbetiae_contig5937:7380..7396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5937 7381..7396 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.6757002-CDS-L-elsbetiae_contig5937:7396..75031622816642.6757002-CDS-L-elsbetiae_contig5937:7396..7503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5937 7397..7503 -
1691683706.7779014-CDS-L-elsbetiae_contig5937:7396..75031691683706.7779014-CDS-L-elsbetiae_contig5937:7396..7503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5937 7397..7503 -
1622816642.6880772-CDS-L-elsbetiae_contig5937:8689..89331622816642.6880772-CDS-L-elsbetiae_contig5937:8689..8933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5937 8690..8933 -
1691683706.7956603-CDS-L-elsbetiae_contig5937:8689..89331691683706.7956603-CDS-L-elsbetiae_contig5937:8689..8933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5937 8690..8933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5937.14421.1

>prot_L-elsbetiae_contig5937.14421.1 ID=prot_L-elsbetiae_contig5937.14421.1|Name=mRNA_L-elsbetiae_contig5937.14421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
PDRSIGVCGSGPPQDGGVQECVSRRSSLDRSINAVGGFSVSVKTCSYSTV
QITPRGGRSDKGGSGGQPLRKSQGSDETNPEGHSWRRQGKTRRRRERTPH
RCCQDAAVERRKIGWG*
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mRNA from alignment at L-elsbetiae_contig5937:7381..8933-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5937.14421.1 ID=mRNA_L-elsbetiae_contig5937.14421.1|Name=mRNA_L-elsbetiae_contig5937.14421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1553bp|location=Sequence derived from alignment at L-elsbetiae_contig5937:7381..8933- (Laminarionema elsbetiae ELsaHSoW15)
CCAGACCGAAGCATTGGTGTCTGTGGCTCCGGCCCTCCTCAAGACGGAGG
CGTTCAAGAGTGTGTCTCTCGGAGGTCCTCCCTCGATAGGAGCATCAATG
CTGTTGGAGGCTTCTCGGTGTCCGTTAAAACTTGCTCCTACTCCACCGTT
CAGATCACCCCCCGGGGCGGAAGGAGTGATAAAGGAGGAAGTGGCGGTCA
GCCGCTAAGGAAGAGTCAGGGGAGCGATGAGACGAACCCGGAAGGCAAGT
CAACAGTAGTAGTAGTAGTAGTACACAGGTAGTCTCAACGCCTCGAGGGC
ATACAGTTGGTTTTGACGGGCTACATGCAGTTGTTTGATTTTGTGGAAAA
CCTGGTGAATACATACTGTATGTATAACCGCATGTGTGTGTGTGTGTCCC
TCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAGACGTGTACTACACC
TTGCGGTGTACTTCGCGAGGTACTACACTTTGCAGTGCATTTGTCTGTAC
AACTAGAACCAACCGGGGTTACATGCACATCTTGTATCACCACCTGCTAC
TAACTTTGCGCTTGCCCTCTAGAACTTTGAAACGGTCGAGGCTGGTTCCG
CTGCACGGTTGGAAAGGTTCTTTACTCCGTCGGCACACCACAAAGCCTTC
GTGTTTCTCTTGTGTGATTGAAAGCTTATTCGATCTGTTCGTCCGTGGAA
CTCCTACTACTGGTGCTTATGTAGACGTATAGAGCATGCCCTAACATATC
GGCTTTGAAAGCAAGCGAAATTGTGAACGGAATGAACAAAGTGTTTCTAC
CTTTCTTATTTCCCCCGTGTAAAACAGACATAATTTAGCCGGCCGAGGTA
ACAGAAGAGTGTCCGTCTCTCTCGCTGAGGCCCCCCACCTTCCGTCAAAT
CTCAAAACTCGTTTTTTCAGTATCTTTCGAGAGCTGTGATTTCGCTCTTG
CCCTCTTCCGTCGCCTTCAGCGCTGAGGGCGTACGTAATCATGTGGGTTA
TCGCACCCCCGTGTTCGCGTAGGGTGCGAACACTATAGAAAACGCTAACA
CGGGGGTGCGATAACCCGCATGATTACGGTAGTCCAGACACAAGCATGCA
TGTCACTGGTTCTCGCCCTCGAGCACACCACTGTGTAATGTATCCGAAAG
AAAGGTAAATTTGATCTGCATGAACCCGCTACCCACTCCCGGTTACTATA
AGTGAAAACTTGTTTCAGGTGATTGTCCCTCCGTTTGCTGCATGGATCGT
CGGCCTGCACGTGTGCTGTACTTGTTACAGTAGATGGCTTTCGCATGCTC
CTGACTGCCTCAACGCTCGTTAGGAGCCTCTCCATAATTTCTGGGCCGCG
TCTAAATTTAGCAATGTTCGACAAGGCACTCCAACACACTACTACAATAA
TGTGACGCCAAACAATCTCCTTGGAAGCAGGTCACTCGTGGCGCAGGCAG
GGTAAGACGAGACGCAGGAGGGAGCGGACACCGCATCGATGTTGCCAAGA
TGCGGCCGTGGAGAGACGCAAGATCGGTTGGGGATGAACTGTGAACAGTA
GAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5937:7381..8933-

>mRNA_L-elsbetiae_contig5937.14421.1 ID=mRNA_L-elsbetiae_contig5937.14421.1|Name=mRNA_L-elsbetiae_contig5937.14421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig5937:7381..8933- (Laminarionema elsbetiae ELsaHSoW15)
CCAGACCGAAGCATTGGTGTCTGTGGCTCCGGCCCTCCTCAAGACGGAGG
CGTTCAAGAGTGTGTCTCTCGGAGGTCCTCCCTCGATAGGAGCATCAATG
CTGTTGGAGGCTTCTCGGTGTCCGTTAAAACTTGCTCCTACTCCACCGTT
CAGATCACCCCCCGGGGCGGAAGGAGTGATAAAGGAGGAAGTGGCGGTCA
GCCGCTAAGGAAGAGTCAGGGGAGCGATGAGACGAACCCGGAAGCCAGAC
CGAAGCATTGGTGTCTGTGGCTCCGGCCCTCCTCAAGACGGAGGCGTTCA
AGAGTGTGTCTCTCGGAGGTCCTCCCTCGATAGGAGCATCAATGCTGTTG
GAGGCTTCTCGGTGTCCGTTAAAACTTGCTCCTACTCCACCGTTCAGATC
ACCCCCCGGGGCGGAAGGAGTGATAAAGGAGGAAGTGGCGGTCAGCCGCT
AAGGAAGAGTCAGGGGAGCGATGAGACGAACCCGGAAGGTCACTCGTGGC
GCAGGCAGGGTAAGACGAGACGCAGGAGGGAGCGGACACCGCATCGATGT
TGCCAAGATGCGGCCGTGGAGAGACGCAAGATCGGTTGGGGATGAGTCAC
TCGTGGCGCAGGCAGGGTAAGACGAGACGCAGGAGGGAGCGGACACCGCA
TCGATGTTGCCAAGATGCGGCCGTGGAGAGACGCAAGATCGGTTGGGGAT
GA
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