mRNA_L-elsbetiae_contig5935.14417.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5935.14417.1
Unique NamemRNA_L-elsbetiae_contig5935.14417.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5935.14417.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 7.850e-74
Identity = 122/127 (96.06%), Postives = 124/127 (97.64%), Query Frame = 1
Query:    1 MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNAGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAG 381
            MPSTLSKLY AAA GSVERTVA+LSQGSV+IDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADN GATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAG
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAG 127          
BLAST of mRNA_L-elsbetiae_contig5935.14417.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.810e-70
Identity = 119/128 (92.97%), Postives = 121/128 (94.53%), Query Frame = 1
Query:    1 MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNAGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGA 384
            MPSTLSKLY AAA GSVERTVA+LSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLR GARVSVADN GATALHLSIV KHLAVS+ALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIH  A
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHVDA 128          
BLAST of mRNA_L-elsbetiae_contig5935.14417.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 4.050e-68
Identity = 123/128 (96.09%), Postives = 124/128 (96.88%), Query Frame = 1
Query:    1 MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNAGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGA 384
            MPSTLSKLYHA A GSVERTVA+LSQGSVDIDGGYGDVGRTPLMAA TMGYLRVVRVLLRLGARVSVADN GATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGA
Sbjct:    1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGA 128          
BLAST of mRNA_L-elsbetiae_contig5935.14417.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.190e-40
Identity = 88/116 (75.86%), Postives = 93/116 (80.17%), Query Frame = 1
Query:   37 ARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNAGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGA 384
            ARGSVERTVALLS+GSVDIDG YGD GRTPLM ASTMGYLRV RVLLRLGA VSVADN GATALHLS+ N+HLAVSKAL+KAGA VEAR VDG              MV+LIHAGA
Sbjct:    5 ARGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARCVDG--------------MVVLIHAGA 106          
BLAST of mRNA_L-elsbetiae_contig5935.14417.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.720e-34
Identity = 76/89 (85.39%), Postives = 77/89 (86.52%), Query Frame = 1
Query:  136 ASTMGYLRVVRVLLRLGARVSVADNAGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAG 381
            ASTMGYLRVVRVLLRLGARVS ADN GATALHLSIVNKHLAVSKALVKAGA +EAR       GV  TPLHVAAAKGFHKGMVMLIHAG
Sbjct:   38 ASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAG 126          
BLAST of mRNA_L-elsbetiae_contig5935.14417.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.460e-28
Identity = 77/139 (55.40%), Postives = 96/139 (69.06%), Query Frame = 1
Query:    1 MPSTLSK-LYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNAGATALHLSIVNKHLAVSKALVKAGAGVEARG---------VDG-TPLHVAAAKGFHKGMVMLIHAGA 384
            +PST S  LY AA+ GSVERT+ LLS G  +ID    + G T LM A+  GYLR+VRVLLR GA VSV+ + G TALH +I  ++LAV+KAL+KAGA VEA+          V G TPLH+AA +GF +GMV LI+AGA
Sbjct:   13 VPSTTSDTLYCAASSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGA 151          
BLAST of mRNA_L-elsbetiae_contig5935.14417.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.460e-13
Identity = 59/138 (42.75%), Postives = 70/138 (50.72%), Query Frame = 1
Query:    1 MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNAGATALHLSIVNKHLAVSKALVKAGAGVEARG---------VDG-TPLHVAAAKGFHKGMVMLIHAGA 384
            MPST S LY+AA  GSVERT+ LLS G  +ID    + G T LM A+  GYLR+VRVLLR GA VSV+ + G                            +          V G TPLH+A  +GF  GMV LI AGA
Sbjct:    1 MPSTTSTLYNAAWTGSVERTLDLLSDGFTEIDRRCEENGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXKADFLHPDQEVVQGQTPLHLATGEGFCDGMVALIDAGA 138          
BLAST of mRNA_L-elsbetiae_contig5935.14417.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.930e-8
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   13 LSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNAGATALHLS 237
            ++KL+ AA  GS   T A+LS GS+DIDGG    G TPLM A    +  VV +LL  GA VS  ++ G TALHLS
Sbjct:   15 INKLHEAARDGSTWLTAAILSTGSIDIDGGDSS-GGTPLMHAICNDHPSVVSILLSKGASVSAINDEGNTALHLS 88          
BLAST of mRNA_L-elsbetiae_contig5935.14417.1 vs. uniprot
Match: D7FXH6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH6_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 7.720e-6
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   22 LYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNA 213
            L+ AAARG V+RT+ALLS+   ++D    D G TPL+AA+  G+  VVRVLL  GA++S+A  A
Sbjct:    6 LHQAAARGMVQRTLALLSRPLANVDQRDND-GFTPLIAAAQEGHHNVVRVLLEHGAQISMASYA 68          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5935.14417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G449_ECTSI7.850e-7496.06EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G2C8_ECTSI1.810e-7092.97EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JL58_9PHAE4.050e-6896.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE3.190e-4075.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE4.720e-3485.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL5_9PHAE5.460e-2855.40Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
D8LP44_ECTSI1.460e-1342.75EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FVK3_ECTSI3.930e-850.67EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FXH6_ECTSI7.720e-651.56Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5935contigL-elsbetiae_contig5935:10..393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.0
Seed ortholog evalue2.5e-57
Seed eggNOG ortholog2880.D7G449
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.4670684-CDS-L-elsbetiae_contig5935:9..3931622816642.4670684-CDS-L-elsbetiae_contig5935:9..393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5935 10..393 -
1691683706.659414-CDS-L-elsbetiae_contig5935:9..3931691683706.659414-CDS-L-elsbetiae_contig5935:9..393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5935 10..393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5935.14417.1prot_L-elsbetiae_contig5935.14417.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5935 10..393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5935.14417.1

>prot_L-elsbetiae_contig5935.14417.1 ID=prot_L-elsbetiae_contig5935.14417.1|Name=mRNA_L-elsbetiae_contig5935.14417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MPSTLSKLYHAAARGSVERTVALLSQGSVDIDGGYGDVGRTPLMAASTMG
YLRVVRVLLRLGARVSVADNAGATALHLSIVNKHLAVSKALVKAGAGVEA
RGVDGTPLHVAAAKGFHKGMVMLIHAGA
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mRNA from alignment at L-elsbetiae_contig5935:10..393-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5935.14417.1 ID=mRNA_L-elsbetiae_contig5935.14417.1|Name=mRNA_L-elsbetiae_contig5935.14417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig5935:10..393- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTCAACTCTAAGCAAACTGTATCATGCCGCAGCCCGTGGTTCCGT CGAGCGTACGGTTGCCCTGCTTTCTCAAGGGTCGGTCGACATCGACGGAG GCTACGGTGATGTGGGCCGGACCCCTCTTATGGCGGCCTCCACCATGGGA TACTTGCGGGTCGTAAGGGTCCTTTTGAGACTCGGAGCCAGAGTGTCGGT GGCGGACAATGCCGGTGCGACTGCTCTACACCTGTCGATTGTCAACAAAC ACCTGGCCGTCAGCAAGGCTCTGGTCAAGGCCGGAGCGGGCGTTGAAGCG CGTGGTGTAGACGGTACGCCGCTTCACGTGGCCGCGGCGAAAGGATTCCA CAAAGGAATGGTGATGCTGATCCACGCGGGTGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5935:10..393-

>mRNA_L-elsbetiae_contig5935.14417.1 ID=mRNA_L-elsbetiae_contig5935.14417.1|Name=mRNA_L-elsbetiae_contig5935.14417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig5935:10..393- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTCAACTCTAAGCAAACTGTATCATGCCGCAGCCCGTGGTTCCGT
CGAGCGTACGGTTGCCCTGCTTTCTCAAGGGTCGGTCGACATCGACGGAG
GCTACGGTGATGTGGGCCGGACCCCTCTTATGGCGGCCTCCACCATGGGA
TACTTGCGGGTCGTAAGGGTCCTTTTGAGACTCGGAGCCAGAGTGTCGGT
GGCGGACAATGCCGGTGCGACTGCTCTACACCTGTCGATTGTCAACAAAC
ACCTGGCCGTCAGCAAGGCTCTGGTCAAGGCCGGAGCGGGCGTTGAAGCG
CGTGGTGTAGACGGTACGCCGCTTCACGTGGCCGCGGCGAAAGGATTCCA
CAAAGGAATGGTGATGCTGATCCACGCGGGTGCGATGCCGTCAACTCTAA
GCAAACTGTATCATGCCGCAGCCCGTGGTTCCGTCGAGCGTACGGTTGCC
CTGCTTTCTCAAGGGTCGGTCGACATCGACGGAGGCTACGGTGATGTGGG
CCGGACCCCTCTTATGGCGGCCTCCACCATGGGATACTTGCGGGTCGTAA
GGGTCCTTTTGAGACTCGGAGCCAGAGTGTCGGTGGCGGACAATGCCGGT
GCGACTGCTCTACACCTGTCGATTGTCAACAAACACCTGGCCGTCAGCAA
GGCTCTGGTCAAGGCCGGAGCGGGCGTTGAAGCGCGTGGTGTAGACGGTA
CGCCGCTTCACGTGGCCGCGGCGAAAGGATTCCACAAAGGAATGGTGATG
CTGATCCACGCGGGTGCG
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