mRNA_L-elsbetiae_contig5931.14412.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5931.14412.1
Unique NamemRNA_L-elsbetiae_contig5931.14412.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5931.14412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5931contigL-elsbetiae_contig5931:9486..11587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size611
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5931.14412.1prot_L-elsbetiae_contig5931.14412.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5931 11081..11389 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.9049401-UTR-L-elsbetiae_contig5931:9485..95861622816641.9049401-UTR-L-elsbetiae_contig5931:9485..9586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5931 9486..9586 +
1691683706.281582-UTR-L-elsbetiae_contig5931:9485..95861691683706.281582-UTR-L-elsbetiae_contig5931:9485..9586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5931 9486..9586 +
1622816641.9245825-UTR-L-elsbetiae_contig5931:11077..110801622816641.9245825-UTR-L-elsbetiae_contig5931:11077..11080Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5931 11078..11080 +
1691683706.2916439-UTR-L-elsbetiae_contig5931:11077..110801691683706.2916439-UTR-L-elsbetiae_contig5931:11077..11080Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5931 11078..11080 +
1622816641.9479094-UTR-L-elsbetiae_contig5931:11389..115871622816641.9479094-UTR-L-elsbetiae_contig5931:11389..11587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5931 11390..11587 +
1691683706.3105536-UTR-L-elsbetiae_contig5931:11389..115871691683706.3105536-UTR-L-elsbetiae_contig5931:11389..11587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5931 11390..11587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.9370322-CDS-L-elsbetiae_contig5931:11080..113891622816641.9370322-CDS-L-elsbetiae_contig5931:11080..11389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5931 11081..11389 +
1691683706.301995-CDS-L-elsbetiae_contig5931:11080..113891691683706.301995-CDS-L-elsbetiae_contig5931:11080..11389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5931 11081..11389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5931.14412.1

>prot_L-elsbetiae_contig5931.14412.1 ID=prot_L-elsbetiae_contig5931.14412.1|Name=mRNA_L-elsbetiae_contig5931.14412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MLIFAGHRLLRLSSPCSATSSPPAGWTHLKLFLGYRIWCSWSAWTMPGMF
FPLRAGCFVISLVSCKYCRGDFFYFGDESVPFPSPVLGPGASVFVCSREK
HF*
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mRNA from alignment at L-elsbetiae_contig5931:9486..11587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5931.14412.1 ID=mRNA_L-elsbetiae_contig5931.14412.1|Name=mRNA_L-elsbetiae_contig5931.14412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2102bp|location=Sequence derived from alignment at L-elsbetiae_contig5931:9486..11587+ (Laminarionema elsbetiae ELsaHSoW15)
GACAGTCCCGGCTTACTAGCACCTACTCTCTTCATAAAAAATAGCCAACG
GTAGTGAGCAGATCGATCTATACCGATTGCTGGTGTTGACGGAAGACAGA
GGTATGTCTAGTGATGCATGTGTAGTGATGATGATGTGTGGATGTGGATG
TGGGTAGTTTGTGCTGATAATGTCGTAGGTGCGCTGCGCGTCATCTGGTG
TGTGTGATCAGAGAGACCGCATCACAGATTTTGCTAGTTCAAGTATATTG
ATGTAGGAGTACGTGGCAACCCAAACAATCCAGCAGCAGCAGCGGCGGCA
GCAGCAGCAGGCATTTATTGCGGAGACGAAACCTATGCAGCACATAGCCT
CCACTGTTGCTGCTGCACAACTGCGTGCGTGACCATCTCCGGGAGTTCAT
ATTATGAACTAGCCTGGGTCCGCAGGAAAAGGGCTTTCAGTGATCAACTG
TTGTGATCAATCGAACCTTCCTATGATCAAGTCCCAGAAGTATTAACCAA
CAGGGAACAGCGGTGACTCTAAAAATCTCACCGGGCACCGGCAGTGACAT
GCACTTTGATTTGGTCTGCTGCGGTAGCCGTGCGTGATAAGTGTGTGCAG
CAAACCGTCGTGTGTTTTTTTGCACGAGCTGGCGAGAGAGCCGCTGCAGC
CGCTTTTTTTCGCCAACAGCATCGATCGAAAAAAAGATAGCCCCCAAGAG
TTTTTTTCCCACAACATTCGACCCACTATATTCTAGCCTATACGGTAACG
ACAAGAACGTTACAATCAACGCAAACAGGCGACATTGCGGACGTTTATAG
CAATGTGTGGTTCTACTTCTAAGCATGAGCTCCCCACTAGCTGGGATGAC
CCGAAGTTTAAAAGATTGGCGCCCTTGCAAGCGAGCATAGCAATGGAAGA
TGTTTGACGTTGGTTCAGATTTTTTCCCAAGCAGTATATCTGAGCGAGCC
AACACACACGTCGCCTATTGAGCTAGTGCTGGAGACACGCAATTCATGAG
AATGGGGTCTGTTCCGGCGAGCACAGCAGTGGAAAATGCTCGATGTCGGC
CCAGATGCAGAGTTTTTGACTTATGGCTGCGGTGCTCGATAACTCGGCCC
TCGCAGCAGATCTCAGCGAGCAAAAACACACGTTGCCTCTCCATGGCGTC
CTGAACTGATGTCGTAGAAGAAAGGGGGATTTCGCACACACTACGCGTTT
TTCGTGCTTTTATGCCTTATTATGCGGTAGAACTTAGACTAGGATGTGTT
TCCTTCGCTAGCGTGCGTCCCTTGAAAGCATCTGTAGACTACTTTGCGCC
CGGGTCGATCGAACTAGTCGGTAGCGCGGAGCGCTGCAAACCTTGCACAA
GTGCGCGCGAGTCTCGACGCCTAAATAGCCTCACGCCCATATATCCTATC
CGTGTGTTTGTGGGGAAATGACAGGACCGCGACTCCTGCGTTCTTTGCGC
ACACTCTGCTGTACGTTGTTACCAATCTCTTTTATGCTTCATATGCATGT
TGCCGTCTTGTACACGAAACACCACGCATGTCAACTTCTTTGCATCCTGA
GAATGATTGCCCTTTTTCTTCTCCGTTGCTGTGATTTTCCAGACCATGTT
AATCTTCGCCGGCCACCGTCTCCTTCGATTATCGTCTCCATGTTCCGCCA
CGTCTTCACCACCTGCCGGATGGACCCATCTCAAATTGTTTTTGGGATAT
CGTATTTGGTGCAGCTGGTCTGCCTGGACCATGCCGGGGATGTTTTTTCC
CCTAAGAGCAGGCTGTTTTGTGATCTCCCTGGTTTCTTGCAAATATTGTC
GCGGGGACTTTTTTTATTTCGGTGACGAATCTGTTCCGTTTCCGTCTCCA
GTCTTGGGCCCTGGGGCTTCGGTTTTTGTGTGTTCGCGAGAGAAACACTT
TTGACTCTTTGGTGATACTTCGCATATTGTTATGCGGCTCTGTACGCTCT
TTGTTCGCCGTGCCGCCTCTGACGCATGACTCTCTTTGTTGTTTTTATTT
GCCGCGTTTGGTCTTCTGTCGAGTGCTGCTTTTGTATATTTAGCTTAGCT
TGGCACATCGACTTACTGATGTTGCTGTGGTGAAGAGAAATATTGTTCCT
TT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5931:9486..11587+

>mRNA_L-elsbetiae_contig5931.14412.1 ID=mRNA_L-elsbetiae_contig5931.14412.1|Name=mRNA_L-elsbetiae_contig5931.14412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig5931:9486..11587+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTAATCTTCGCCGGCCACCGTCTCCTTCGATTATCGTCTCCATGTTC
CGCCACGTCTTCACCACCTGCCGGATGGACCCATCTCAAATTGTTTTTGG
GATATCGTATTTGGTGCAGCTGGTCTGCCTGGACCATGCCGGGGATGTTT
TTTCCCCTAAGAGCAGGCTGTTTTGTGATCTCCCTGGTTTCTTGCAAATA
TTGTCGCGGGGACTTTTTTTATTTCGGTGACGAATCTGTTCCGTTTCCGT
CTCCAGTCTTGGGCCCTGGGGCTTCGGTTTTTGTGTGTTCGCGAGAGAAA
CACTTTTGAATGTTAATCTTCGCCGGCCACCGTCTCCTTCGATTATCGTC
TCCATGTTCCGCCACGTCTTCACCACCTGCCGGATGGACCCATCTCAAAT
TGTTTTTGGGATATCGTATTTGGTGCAGCTGGTCTGCCTGGACCATGCCG
GGGATGTTTTTTCCCCTAAGAGCAGGCTGTTTTGTGATCTCCCTGGTTTC
TTGCAAATATTGTCGCGGGGACTTTTTTTATTTCGGTGACGAATCTGTTC
CGTTTCCGTCTCCAGTCTTGGGCCCTGGGGCTTCGGTTTTTGTGTGTTCG
CGAGAGAAACACTTTTGA
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