mRNA_L-elsbetiae_contig5929.14406.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5929.14406.1
Unique NamemRNA_L-elsbetiae_contig5929.14406.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5929.14406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5929contigL-elsbetiae_contig5929:6052..6723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size672
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5929.14406.1prot_L-elsbetiae_contig5929.14406.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5929 6175..6513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.370826-UTR-L-elsbetiae_contig5929:6051..61741622816641.370826-UTR-L-elsbetiae_contig5929:6051..6174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 6052..6174 +
1691683705.873177-UTR-L-elsbetiae_contig5929:6051..61741691683705.873177-UTR-L-elsbetiae_contig5929:6051..6174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 6052..6174 +
1622816641.3918269-UTR-L-elsbetiae_contig5929:6513..67231622816641.3918269-UTR-L-elsbetiae_contig5929:6513..6723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 6514..6723 +
1691683705.8978548-UTR-L-elsbetiae_contig5929:6513..67231691683705.8978548-UTR-L-elsbetiae_contig5929:6513..6723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 6514..6723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.3819308-CDS-L-elsbetiae_contig5929:6174..65131622816641.3819308-CDS-L-elsbetiae_contig5929:6174..6513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5929 6175..6513 +
1691683705.883616-CDS-L-elsbetiae_contig5929:6174..65131691683705.883616-CDS-L-elsbetiae_contig5929:6174..6513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5929 6175..6513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5929.14406.1

>prot_L-elsbetiae_contig5929.14406.1 ID=prot_L-elsbetiae_contig5929.14406.1|Name=mRNA_L-elsbetiae_contig5929.14406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MVTLPHRPGLLCVCVCPSHLFWRQSPQVETCTTTPCRVLRGTTLCSAFVC
TTRTNRGHTIVPAHSQQAAQQQFVFFSLVHGMFIVGVQVVAPVFEPISQN
TCCVFVLFSSGY*
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mRNA from alignment at L-elsbetiae_contig5929:6052..6723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5929.14406.1 ID=mRNA_L-elsbetiae_contig5929.14406.1|Name=mRNA_L-elsbetiae_contig5929.14406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig5929:6052..6723+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCAGTGGTGTGGTTCCTTTCTACCTGTGCTGTGTCTATTGGGCACAAG
GTACAGTCCTGCTAGTGTTAAGCAGGCTCAACAAGACAATATTGCTGTCA
TCTTGTGTATCGGCTCTGTACTCATGGTAACCCTGCCTCACCGCCCCGGA
CTATTGTGTGTGTGTGTGTGTCCTTCCCATTTATTTTGGCGACAGTCCCC
CCAAGTGGAGACGTGTACTACTACACCTTGCCGTGTACTTAGAGGTACTA
CACTTTGCAGTGCGTTTGTCTGTACAACTAGAACCAACCGGGGTCACACT
ATTGTACCGGCACACAGTCAGCAAGCCGCACAGCAACAGTTCGTGTTTTT
TTCTCTTGTCCACGGAATGTTTATTGTGGGAGTACAGGTAGTAGCTCCAG
TCTTTGAGCCGATCTCTCAGAATACATGTTGTGTTTTTGTTTTGTTTTCC
TCCGGTTATTGACACATGTATTCATCGTCTTCTGCCCCACTGGCCCCCTT
CCTCCACTCCGACTAGCTGGACGACCCAACCGGGGTCACACAGGAGAGCG
GGGGGTGGACCCACAGGATGCTGTACCTCCGTGGCACACTTAACCCCCAT
ACCGACGGCACTTCCAGTAACGAGCCACCCACGGGGCCATTTTTCTTTTG
ACGCCCGGGAATCTGCCCTCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5929:6052..6723+

>mRNA_L-elsbetiae_contig5929.14406.1 ID=mRNA_L-elsbetiae_contig5929.14406.1|Name=mRNA_L-elsbetiae_contig5929.14406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig5929:6052..6723+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAACCCTGCCTCACCGCCCCGGACTATTGTGTGTGTGTGTGTGTCC
TTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAGACGTGTACTACTA
CACCTTGCCGTGTACTTAGAGGTACTACACTTTGCAGTGCGTTTGTCTGT
ACAACTAGAACCAACCGGGGTCACACTATTGTACCGGCACACAGTCAGCA
AGCCGCACAGCAACAGTTCGTGTTTTTTTCTCTTGTCCACGGAATGTTTA
TTGTGGGAGTACAGGTAGTAGCTCCAGTCTTTGAGCCGATCTCTCAGAAT
ACATGTTGTGTTTTTGTTTTGTTTTCCTCCGGTTATTGAATGGTAACCCT
GCCTCACCGCCCCGGACTATTGTGTGTGTGTGTGTGTCCTTCCCATTTAT
TTTGGCGACAGTCCCCCCAAGTGGAGACGTGTACTACTACACCTTGCCGT
GTACTTAGAGGTACTACACTTTGCAGTGCGTTTGTCTGTACAACTAGAAC
CAACCGGGGTCACACTATTGTACCGGCACACAGTCAGCAAGCCGCACAGC
AACAGTTCGTGTTTTTTTCTCTTGTCCACGGAATGTTTATTGTGGGAGTA
CAGGTAGTAGCTCCAGTCTTTGAGCCGATCTCTCAGAATACATGTTGTGT
TTTTGTTTTGTTTTCCTCCGGTTATTGA
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