mRNA_L-elsbetiae_contig5924.14400.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5924.14400.1
Unique NamemRNA_L-elsbetiae_contig5924.14400.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5924.14400.1 vs. uniprot
Match: D8LQC7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC7_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 7.670e-84
Identity = 138/208 (66.35%), Postives = 159/208 (76.44%), Query Frame = 1 
Query:  217 QVEAGHSRSTTATSTSSYQSGGEYSGYSSLAGTESRGIRRIPLERTAPSQDHEGVQFSAPT-NFPGTQGAPGTTERLTACHRYSRIVRVLAILDALVVLCGASAFTPLILMIWGPIAGYLSSNFQLKAAYTFLFYYGLRISWDIGWLLSGGITWIVVWVFLFTDLAASGLVYFYLGALRGCSAAEVVQLRDPNTPFASSFFSRFVSGT 837
            +++  HS  T   STSSYQSGG YS  +        G+     ER APSQDH GVQFS P  +FPGT   P  +E L ACHRYSR+VRVLAILDA++VLCGASAFTPLILMIWGPIAGYL+SNF+L+AA+TFLFYYGLRISWDIGW+LSGGI W+VVWVFLFTD+AASGLVYF++  L  CS AEV  LRDPNT +AS+FF   V  T
Sbjct:   18 EMDEDHSTVTATPSTSSYQSGGSYSSVADTHHYRQAGMGPARTERLAPSQDHTGVQFSPPAPSFPGT---PRPSESLMACHRYSRVVRVLAILDAIIVLCGASAFTPLILMIWGPIAGYLASNFRLRAAFTFLFYYGLRISWDIGWILSGGIKWVVVWVFLFTDVAASGLVYFFVVLLCRCSTAEVEHLRDPNTAWASAFFPLSVGAT 222
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5924.14400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQC7_ECTSI7.670e-8466.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5924contigL-elsbetiae_contig5924:6402..9827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005140.1
Exons6
Model size944
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5924.14400.1prot_L-elsbetiae_contig5924.14400.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5924 6540..9753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.8224754-UTR-L-elsbetiae_contig5924:6401..65391622816640.8224754-UTR-L-elsbetiae_contig5924:6401..6539Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5924 6402..6539 +
1691683705.5053535-UTR-L-elsbetiae_contig5924:6401..65391691683705.5053535-UTR-L-elsbetiae_contig5924:6401..6539Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5924 6402..6539 +
1622816640.9133334-UTR-L-elsbetiae_contig5924:9753..98271622816640.9133334-UTR-L-elsbetiae_contig5924:9753..9827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5924 9754..9827 +
1691683705.588689-UTR-L-elsbetiae_contig5924:9753..98271691683705.588689-UTR-L-elsbetiae_contig5924:9753..9827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5924 9754..9827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.8396382-CDS-L-elsbetiae_contig5924:6539..66201622816640.8396382-CDS-L-elsbetiae_contig5924:6539..6620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 6540..6620 +
1691683705.5158274-CDS-L-elsbetiae_contig5924:6539..66201691683705.5158274-CDS-L-elsbetiae_contig5924:6539..6620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 6540..6620 +
1622816640.8518634-CDS-L-elsbetiae_contig5924:7502..76081622816640.8518634-CDS-L-elsbetiae_contig5924:7502..7608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 7503..7608 +
1691683705.526507-CDS-L-elsbetiae_contig5924:7502..76081691683705.526507-CDS-L-elsbetiae_contig5924:7502..7608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 7503..7608 +
1622816640.8659718-CDS-L-elsbetiae_contig5924:8066..81501622816640.8659718-CDS-L-elsbetiae_contig5924:8066..8150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 8067..8150 +
1691683705.538126-CDS-L-elsbetiae_contig5924:8066..81501691683705.538126-CDS-L-elsbetiae_contig5924:8066..8150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 8067..8150 +
1622816640.8801286-CDS-L-elsbetiae_contig5924:8645..87661622816640.8801286-CDS-L-elsbetiae_contig5924:8645..8766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 8646..8766 +
1691683705.5506134-CDS-L-elsbetiae_contig5924:8645..87661691683705.5506134-CDS-L-elsbetiae_contig5924:8645..8766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 8646..8766 +
1622816640.8912053-CDS-L-elsbetiae_contig5924:9053..91971622816640.8912053-CDS-L-elsbetiae_contig5924:9053..9197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 9054..9197 +
1691683705.5628562-CDS-L-elsbetiae_contig5924:9053..91971691683705.5628562-CDS-L-elsbetiae_contig5924:9053..9197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 9054..9197 +
1622816640.9022098-CDS-L-elsbetiae_contig5924:9557..97531622816640.9022098-CDS-L-elsbetiae_contig5924:9557..9753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 9558..9753 +
1691683705.5764127-CDS-L-elsbetiae_contig5924:9557..97531691683705.5764127-CDS-L-elsbetiae_contig5924:9557..9753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5924 9558..9753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5924.14400.1

>prot_L-elsbetiae_contig5924.14400.1 ID=prot_L-elsbetiae_contig5924.14400.1|Name=mRNA_L-elsbetiae_contig5924.14400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
MNGTLNNPAGILSATDRLQQQRDDAQQVEAGHSRSTTATSTSSYQSGGEY
SGYSSLAGTESRGIRRIPLERTAPSQDHEGVQFSAPTNFPGTQGAPGTTE
RLTACHRYSRIVRVLAILDALVVLCGASAFTPLILMIWGPIAGYLSSNFQ
LKAAYTFLFYYGLRISWDIGWLLSGGITWIVVWVFLFTDLAASGLVYFYL
GALRGCSAAEVVQLRDPNTPFASSFFSRFVSGTRSSSGTSSVI*
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mRNA from alignment at L-elsbetiae_contig5924:6402..9827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5924.14400.1 ID=mRNA_L-elsbetiae_contig5924.14400.1|Name=mRNA_L-elsbetiae_contig5924.14400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3426bp|location=Sequence derived from alignment at L-elsbetiae_contig5924:6402..9827+ (Laminarionema elsbetiae ELsaHSoW15)
CGATCGAGATATAGGGCGGGCAGGTGTGCGCGATCTTCCACAAATAAATC
AATTCCTGGGAGCCCGATACCCTTTTATTCGCACCACCTCAACATGCATC
GTTGACTGCTGTGTGTCTAGAGGGGGCGCGGCTGAGAAATGAACGGGACG
TTGAACAACCCTGCCGGGATTCTCTCCGCAACAGATCGCTTGCAGCAACA
ACGAGACGACGCACAGCAGGCGAGTTCCGGATCCACACATCGTCGTTGTG
CGTGTGCGTTCAGTATGAGCCCCTGTGGTTCTCTGGAGCGGGTATCGCCG
CAGATAAAGTATCACATAGATATGTAGACTGATTTAATATCTATCCACAC
ATCTATCGGTGGAGTCGAAAATGGATGGATGTGTTCCAGACCTTGCTGGT
GTCGTAGTGTACATACATATTGATGCACATACACATGTACTTCCGGCGCG
GGGTTGATGATTCGAGACAATACATCTCCCCGCGGGCCAACTCAGCGAAT
AAAATTGCACACGTGAAAGCGGGCTATTGCAACACCCTGCAGGGGGCAAC
CTCTCTCCTGCCAAAATAACCTGAAAATAACCAGCATCGGGGGCAGCTGG
GGGAACCTATGGGTATGACATATAAAGCGAAGCATATTTTATTTATATGT
CATACCCATAGGGGGGAACTACACGTATGTAAGGTAGATAGTAGTCTAGT
AGTGGCTAGTCACATAGCAGAGGGTGGGGGAAAATATTATAGTATGACAT
TTAGGTGGGGTTTATGGGAAGGACATGGCAGCCTGTTCGTAGAGTGAGGG
AGAGAGGAGTTATTATATTCGGGGCCATCGTGTACAAGTATCTATCTAGT
CTAGTCTATGTATCTAGATACATAGATACATCTTAGATAGACAGACACTC
TGGATAGTATGTAGTGCATCTAGGAGGCCGACGTTGCTACATAGGTGTAG
AGAACCAGCATCTATATCTAAACAAATGGCAACATTCACATCACACCGAC
GAGTCAAAGTAGCCCACAACGTGAACGATCATACAAGTCAACGTTTGCCT
CACACCGTGTGTATCACGCCGCCATATGATCTGTCCGACGAAAATCGACA
GGTTGAAGCGGGACATTCACGTTCGACCACGGCGACCTCGACGTCGTCGT
ACCAAAGCGGTGGAGAGTATAGCGGGTACAGCAGTCTTGCGGGCACGGAG
AGTCGAGGTGAAAACAGCAACAGAGAGGGTATTTCGAACCTCAACACATG
TAGCACAGCACGGCCACCTTTGGGATAGGTTAGGAATACTGCTGTACACT
TGTTTTCATCATCCAATCTATACGTTGCTGCATGCCCGTCTAATACATAC
CGCCCCCCAAGCATGTTCAAGCAGGCGCCAGTATATTATTTACAGCAACA
GTACAGGAACATTCTGCCGTTTACCTCCACGCAAGGCCCGTTGTCGTCGA
TTTTGAGTACGCAAGGTGCAGCGCATTAGATGGGCTCCACGCATGTGTTT
TTCGATAAATTTGCGCAGACCACCCTTGATGACGACACAGCGACATTCTA
TCCTAAATGTTTCCATTGCTAAATATTCCGAAAGAGTACTGTAAACTTGT
TTGTCGGACCGGCATCGTCCACCCCTCAAAGATCCTGATATCCGTCACGT
CTCCTGCTGTAGCAGGTATTCGCCGCATTCCACTGGAACGAACAGCGCCC
AGCCAAGACCACGAAGGGGTTCAGTTTTCGGCCCCCACAAACTTCCCGGG
TAGGCGAAGTACCTTGCAGGCTGTCTTCTCTGTAGCAAAACTCCGTTTTA
CGTACATGGGTTGTTGTTTCCCAACTGGCGTCCCACATAGTTCGTAATCC
CGGACCAGACAGAACAGTGTGCCCGGGAGACCCTATTTGCAGGACGCACC
TACAACGAATCACGTGCAGGACGTTCCTCCGATTGGCTAACAACCAGCCG
CGTGTTTTTTTTCACGAACGCCTGCCCGACGCGCGGCGAAGCCGGCGCGA
GGCACTTTTAGGCCCCGGACCGGCCAAAACGCCACGGTTACGGGTTGGGG
TTAGGGTTGGGGTTGGGTCGGGTCGGTGTGGGCACCTTGAAAAGGAGTGT
GTCACAACGTCCTGCAACTATTGTTTGCAGGTGCGTCCTGCAAATAGGCT
CTCTCCAGTGTGCCCCCCATCTGAAACAATATTCATTGTGTCCTGAGTGC
TTTTTCGTCCGTATTTCGTACTTGGATTGTTTTTGGTGCACCAGGGACGC
AAGGGGCACCAGGAACGACCGAGCGGTTAACAGCGTGCCACCGTTACTCG
AGGATTGTCCGGGTGCTGGCCATTCTTGATGCGCTGGTGGTTTTGTGCGG
AGCCTCCGCCTTCACGTGAGAAGTAGAATAGACAAGTATCTCTCGTGTGC
CCCGCGAAGATGGTGGGGAAGAGGGGGAGGGGGAGAAACGCGGGTATACA
GAAAGTAGGGTTATGTGTCGCTCGGGACACCCTGATATTTTGCCCTTTGA
TCTCGTACTTGCCGTTGGCGTTCGTCGCGGCGTTCTGGTTTTAATCCTCC
CCACTCCACTCCTCCCCTCAACGCATGATCGTAACACCTTGCCACCACCG
TGACCGCTGCCGTTCGAAATACTAAACTCTCGGCACGCCCCTTCCCATCC
AGGCCATTGATTCTCATGATATGGGGGCCGATCGCCGGGTACTTGTCGTC
CAACTTTCAGCTAAAGGCGGCCTACACGTTCCTCTTCTACTATGGCTTGA
GGATTTCCTGGGATATCGGTTGGCTCCTTAGCGGCGGGATTACGTGGTAA
GCAGCCTACCCGGCCACCCCGGCCAGCTTATCCCGATGGATCATTGGGGG
CCTCTTACCACTCATTTCTAGCCTACTACGTAGAGAATGTGTGTATGTAG
CACGAGGTTACTCCGCAGCTGCACAGCACAGCACAGCAAGATATTGCACA
CCCTCGGTGGGCAGCAAAACATCTAGCAAGAACCGGCAGTGCAGCGTCGC
CTACATGGCACTCCCTATCAAAAAAGTGTATGCTCACTTCGCTGTTGTTT
TCTGACACTGTTCCCCGTGCACCCTATCTTTCCACCCTGTTCCCCGCACG
CTACACGCACCCCTCGCCCATTCACAACTCGACATCGACCGGCAACAAAT
TCACAGGATCGTGGTCTGGGTGTTTCTGTTCACTGACTTGGCTGCATCGG
GGTTGGTGTACTTCTACCTCGGCGCGCTGCGCGGGTGCTCGGCTGCCGAA
GTGGTGCAGCTGCGAGATCCAAACACACCGTTCGCGTCGTCGTTTTTCTC
ACGTTTCGTTTCCGGCACACGATCCTCCTCCGGGACTTCTTCTGTCATTT
GATCTCGTTGATGAGAAAAAGACCGGCAAGGCTGCTCCTCGCTCGCTGTT
TCAAGGGAGGTCGGGATCCTGGGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5924:6402..9827+

>mRNA_L-elsbetiae_contig5924.14400.1 ID=mRNA_L-elsbetiae_contig5924.14400.1|Name=mRNA_L-elsbetiae_contig5924.14400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig5924:6402..9827+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGGGACGTTGAACAACCCTGCCGGGATTCTCTCCGCAACAGATCG
CTTGCAGCAACAACGAGACGACGCACAGCAGATGAACGGGACGTTGAACA
ACCCTGCCGGGATTCTCTCCGCAACAGATCGCTTGCAGCAACAACGAGAC
GACGCACAGCAGGTTGAAGCGGGACATTCACGTTCGACCACGGCGACCTC
GACGTCGTCGTACCAAAGCGGTGGAGAGTATAGCGGGTACAGCAGTCTTG
CGGGCACGGAGAGTCGAGGTTGAAGCGGGACATTCACGTTCGACCACGGC
GACCTCGACGTCGTCGTACCAAAGCGGTGGAGAGTATAGCGGGTACAGCA
GTCTTGCGGGCACGGAGAGTCGAGGTATTCGCCGCATTCCACTGGAACGA
ACAGCGCCCAGCCAAGACCACGAAGGGGTTCAGTTTTCGGCCCCCACAAA
CTTCCCGGGTATTCGCCGCATTCCACTGGAACGAACAGCGCCCAGCCAAG
ACCACGAAGGGGTTCAGTTTTCGGCCCCCACAAACTTCCCGGGGACGCAA
GGGGCACCAGGAACGACCGAGCGGTTAACAGCGTGCCACCGTTACTCGAG
GATTGTCCGGGTGCTGGCCATTCTTGATGCGCTGGTGGTTTTGTGCGGAG
CCTCCGCCTTCACGGACGCAAGGGGCACCAGGAACGACCGAGCGGTTAAC
AGCGTGCCACCGTTACTCGAGGATTGTCCGGGTGCTGGCCATTCTTGATG
CGCTGGTGGTTTTGTGCGGAGCCTCCGCCTTCACGCCATTGATTCTCATG
ATATGGGGGCCGATCGCCGGGTACTTGTCGTCCAACTTTCAGCTAAAGGC
GGCCTACACGTTCCTCTTCTACTATGGCTTGAGGATTTCCTGGGATATCG
GTTGGCTCCTTAGCGGCGGGATTACGTGGCCATTGATTCTCATGATATGG
GGGCCGATCGCCGGGTACTTGTCGTCCAACTTTCAGCTAAAGGCGGCCTA
CACGTTCCTCTTCTACTATGGCTTGAGGATTTCCTGGGATATCGGTTGGC
TCCTTAGCGGCGGGATTACGTGGATCGTGGTCTGGGTGTTTCTGTTCACT
GACTTGGCTGCATCGGGGTTGGTGTACTTCTACCTCGGCGCGCTGCGCGG
GTGCTCGGCTGCCGAAGTGGTGCAGCTGCGAGATCCAAACACACCGTTCG
CGTCGTCGTTTTTCTCACGTTTCGTTTCCGGCACACGATCCTCCTCCGGG
ACTTCTTCTGTCATTTGAGATCGTGGTCTGGGTGTTTCTGTTCACTGACT
TGGCTGCATCGGGGTTGGTGTACTTCTACCTCGGCGCGCTGCGCGGGTGC
TCGGCTGCCGAAGTGGTGCAGCTGCGAGATCCAAACACACCGTTCGCGTC
GTCGTTTTTCTCACGTTTCGTTTCCGGCACACGATCCTCCTCCGGGACTT
CTTCTGTCATTTGA
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