mRNA_L-elsbetiae_contig5924.14398.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5924.14398.1 vs. uniprot
Match: A0A836CLG1_9STRA (Complex1_LYR_dom domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG1_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.760e-19 Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 1 Query: 4 SSHAQAKELLRQAESRLGFLKMATPRRKVGSKGSTRAVYRDGRVMEGEEARKHDKARHSNWDGRNLDPDSVRHHKKTLARAGFANHQQVIGPHGF 288 SS + +LL QA+SRL +LK+ TPR +G+ + VY+DG+++E + + +A SNW G N+DPDSV H+ TL+RAGF +H V+G HGF Sbjct: 39 SSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDR-PRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF 132
BLAST of mRNA_L-elsbetiae_contig5924.14398.1 vs. uniprot
Match: A0A7S2S2D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2D5_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.430e-17 Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1 Query: 25 ELLRQAESRLGFLKMATPRR--KVGSKGSTRAVYRDGRVMEGEEARKHDKARHSNWDGRNLDPDSVRHHKKTLARAGFANHQQVIG 276 +LL QAESRL FLKM TPR ++G + ST VY++G+ ++ AR D+ARHSNW G N+DPDSV H+ L RAGF ++ G Sbjct: 54 QLLAQAESRLSFLKMVTPREYHRLGGQQSTYYVYQNGKRLDDGSARTQDRARHSNWTGSNMDPDSVAKHQHLLNRAGFQDNSHAKG 139
BLAST of mRNA_L-elsbetiae_contig5924.14398.1 vs. uniprot
Match: A0A1Z5K517_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K517_FISSO) HSP 1 Score: 61.2 bits (147), Expect = 8.140e-10 Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 1 ISSHAQAKELLRQAESRLGFLKMATPRRKVGSKGSTRAVYRDGRVMEG--EEARKHDKARH-SNWDGRNLDPDSVRHHKKTLARAGFANHQQVIG 276 +S + ++ LR+AESRL FL+M + + + + R VYR+G +E E + K + SNWDG+NLDP+SV+ H++ L RAGF N+ G Sbjct: 40 LSENETPEQRLREAESRLSFLRMKSTKSQQRGTLAGRWVYRNGERLEADAEGTFRDSKGKVVSNWDGKNLDPESVKMHRQQLRRAGFVNNAHAKG 134
BLAST of mRNA_L-elsbetiae_contig5924.14398.1 vs. uniprot
Match: A0A4D9CSL6_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSL6_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.350e-9 Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 1 Query: 13 AQAKELLRQAESRLGFLKMATPRR-------------KVGSKGSTRAVYRDGRVMEGEEARKHDKARHSNWDGRNLDPDSVRHHKKTLARAGFANHQQVIG 276 A+ EL+ QA S LG+L+M TP+R S G T VY+DG + E + +K+ +SNWDG ++DPD+VR H+ L R GF ++ G Sbjct: 53 ARITELMEQASSSLGYLRMITPKRWKSLHTGDSDAMGGAQSAGRTYIVYKDGGSVSREPLPR-EKSAYSNWDGSSMDPDAVRRHQHQLRRMGFRDNTHAKG 152
BLAST of mRNA_L-elsbetiae_contig5924.14398.1 vs. uniprot
Match: A0A448YU73_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU73_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 3.180e-9 Identity = 41/93 (44.09%), Postives = 50/93 (53.76%), Query Frame = 1 Query: 31 LRQAESRLGFLKMATPRRKVGSKGSTRA--------VYRDGRVMEGEEA-RKHDKARH--SNWDGRNLDPDSVRHHKKTLARAGFANHQQVIG 276 L +AES+ FLKM TPR + S T VYR+G +E + A R DK SNWDG+NLDPDSV+ H L R GF N+ G Sbjct: 59 LEEAESKRSFLKMVTPRERPSSSRRTEEGASPSRVWVYRNGERLERDGASRVRDKNGRVVSNWDGKNLDPDSVKQHNYQLKRMGFRNNAHAKG 151
BLAST of mRNA_L-elsbetiae_contig5924.14398.1 vs. uniprot
Match: A0A6U3XLZ3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3XLZ3_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 1.560e-6 Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 1 Query: 28 LLRQAESRLGFLKMATPR-RKVGSKGSTRAVYRDG---RVMEGEEARKHDKARHSNWDGRNLDPDSVRHHKKTLARAGFANHQQVIG 276 L+ +A ++ +L++ TP+ R K S R +Y DG +V G D SNW+G+NLDP SV+ H++ L RAGF N+ G Sbjct: 71 LIEEAGKKIAYLRIVTPKDRSTNQKSSERWIY-DGNGNKVFNGIGQLNRDGKAVSNWNGKNLDPCSVKRHRQQLGRAGFVNNLHAKG 156 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5924.14398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5924.14398.1 >prot_L-elsbetiae_contig5924.14398.1 ID=prot_L-elsbetiae_contig5924.14398.1|Name=mRNA_L-elsbetiae_contig5924.14398.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp ISSHAQAKELLRQAESRLGFLKMATPRRKVGSKGSTRAVYRDGRVMEGEEback to top mRNA from alignment at L-elsbetiae_contig5924:834..1124+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5924.14398.1 ID=mRNA_L-elsbetiae_contig5924.14398.1|Name=mRNA_L-elsbetiae_contig5924.14398.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=291bp|location=Sequence derived from alignment at L-elsbetiae_contig5924:834..1124+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5924:834..1124+ >mRNA_L-elsbetiae_contig5924.14398.1 ID=mRNA_L-elsbetiae_contig5924.14398.1|Name=mRNA_L-elsbetiae_contig5924.14398.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig5924:834..1124+ (Laminarionema elsbetiae ELsaHSoW15)back to top |