mRNA_L-elsbetiae_contig5923.14397.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5923.14397.1 vs. uniprot
Match: D7FV49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV49_ECTSI) HSP 1 Score: 233 bits (593), Expect = 2.350e-61 Identity = 144/241 (59.75%), Postives = 168/241 (69.71%), Query Frame = 3 Query: 3 VHKMVDVPDTGATLGAAFSKALLRLEGFSGEVAARIFAAAEAFEGGSGKTASRLCER-GGCRARVEGARRLVRAAADVVDAVRARNFVLSLLDFEGVQEAIVEAGGWSRVESWASALKKLRGSADVDAPLTLLSDVEELKDWLRCESSWRHAAEGAEEGLRRLLDLRPLREVVERARQRWMCPEAYQLLRQDVLEA-QERFEFPEVKKAAALVEAXXXXXXXXXXAAETVKTGGKRKPGRK 719 VH +VDV +T ATLGA+FSKAL RLEGFS E+A + +AAEAF + +RL ER GGC ARVE A RL+ A ADVVDAVRAR FVLSLL+ EGV+EAIVEAGGW VE WAS+LK L+G AD+D PLTLLSDV K WL + +W HA AE LR LL+LR LR VERARQRWMCPEAYQ LRQ++LEA +RF FPE+KK A AA ++ GK KP +K Sbjct: 1685 VHTVVDVSETDATLGASFSKALFRLEGFSCEMAVEVLSAAEAF---AAADQTRLAERDGGCPARVESAGRLLSATADVVDAVRARKFVLSLLELEGVEEAIVEAGGWGNVEMWASSLKGLKGCADIDEPLTLLSDVGAFKAWLMSKPTWGHAT--AEGILRSLLELRALRGRVERARQRWMCPEAYQALRQEILEAAHDRFRFPELKKKEGKAAADGRVE-----AAVVEQSAGKGKPVKK 1915
BLAST of mRNA_L-elsbetiae_contig5923.14397.1 vs. uniprot
Match: A0A6H5JEK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK1_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.460e-24 Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 3 Query: 354 KLRGSADVDAPLTLLSDVEELKDWLRCESSWRHAAEGAEEGLRRLLDLRPLREVVERARQRWMCPEAYQLLRQDVLEA-QERFEFPEVKK 620 +L+G AD+D PLTLLSDV K WLR E +W HAAE AE LR LL+L LR +VERARQRWMCPEAYQ LRQ++LEA +RF FPE+KK Sbjct: 3 RLKGCADIDEPLTLLSDVGAFKAWLRSEPTWGHAAETAEGILRSLLELPVLRGLVERARQRWMCPEAYQALRQEILEAAHDRFRFPELKK 92 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5923.14397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5923.14397.1 >prot_L-elsbetiae_contig5923.14397.1 ID=prot_L-elsbetiae_contig5923.14397.1|Name=mRNA_L-elsbetiae_contig5923.14397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=323bp MVDVPDTGATLGAAFSKALLRLEGFSGEVAARIFAAAEAFEGGSGKTASRback to top mRNA from alignment at L-elsbetiae_contig5923:2359..10255- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5923.14397.1 ID=mRNA_L-elsbetiae_contig5923.14397.1|Name=mRNA_L-elsbetiae_contig5923.14397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7897bp|location=Sequence derived from alignment at L-elsbetiae_contig5923:2359..10255- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5923:2359..10255- >mRNA_L-elsbetiae_contig5923.14397.1 ID=mRNA_L-elsbetiae_contig5923.14397.1|Name=mRNA_L-elsbetiae_contig5923.14397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1938bp|location=Sequence derived from alignment at L-elsbetiae_contig5923:2359..10255- (Laminarionema elsbetiae ELsaHSoW15)back to top |