mRNA_L-elsbetiae_contig5917.14391.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5917.14391.1
Unique NamemRNA_L-elsbetiae_contig5917.14391.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5917.14391.1 vs. uniprot
Match: A0A6H5L4Q6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q6_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.050e-23
Identity = 68/106 (64.15%), Postives = 71/106 (66.98%), Query Frame = -1 
Query:    1 PPVAERFLVAVAPLLRLRPRLQDSVVLPLRKALFSREWRARLVAVGGLVQLLKVQSRNSAXXXXXXXXXXXXXXXXXXMSQTSQMSEGQ-VXXXXXLLLPVGSGGG 315
            P VAERFL AV+PL+RLRP LQDSVVLPLRKALFSRE RARLVAVGGLV LLK QSRN+A                  MSQTSQMSEGQ V          GSGGG
Sbjct:  666 PTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKAQSRNAAAVGGRGGLSGGSNGGTQ-MSQTSQMSEGQQVAMALPFPQAAGSGGG 770
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BLAST of mRNA_L-elsbetiae_contig5917.14391.1 vs. uniprot
Match: D7FNN8_ECTSI (Fanconi anemia, complementation group I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN8_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.440e-22
Identity = 62/89 (69.66%), Postives = 65/89 (73.03%), Query Frame = -1 
Query:   49 PPVAERFLVAVAPLLRLRPRLQDSVVLPLRKALFSREWRARLVAVGGLVQLLKVQSRNSAXXXXXXXXXXXXXXXXXXMSQTSQMSEGQ 315
            P VAERFL AV+PL+RLRP LQDSVVLPLRKALFSRE RARLVAVGGLV LLK QSRN+A                  MSQTSQMSEGQ
Sbjct:  644 PTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAAAVAGRGGLSGGSNGGTQ-MSQTSQMSEGQ 731
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BLAST of mRNA_L-elsbetiae_contig5917.14391.1 vs. uniprot
Match: A0A1X2HS63_SYNRA (FANCI solenoid 4-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HS63_SYNRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.830e-5
Identity = 25/59 (42.37%), Postives = 44/59 (74.58%), Query Frame = -1 
Query:  136 PVAERFLVAVAPLLRLRPRLQDSVVLPLRKALFSREWRARLVAVGGLVQLLKVQSRNSA 312
            P+AER L+A+ PL ++  +L+D+++L LRK++FSR+  +R ++V GL+ LL+ Q  N +
Sbjct:  483 PIAERLLLAIKPLAKVDDQLRDTLMLVLRKSMFSRDVDSRKISVTGLLGLLEEQLENGS 541
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5917.14391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4Q6_9PHAE2.050e-2364.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNN8_ECTSI2.440e-2269.66Fanconi anemia, complementation group I n=1 Tax=Ec... [more]
A0A1X2HS63_SYNRA4.830e-542.37FANCI solenoid 4-domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5917contigL-elsbetiae_contig5917:6844..7159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.9202611-CDS-L-elsbetiae_contig5917:6843..71581622816639.9202611-CDS-L-elsbetiae_contig5917:6843..7158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5917 6844..7158 +
1691683704.8377736-CDS-L-elsbetiae_contig5917:6843..71581691683704.8377736-CDS-L-elsbetiae_contig5917:6843..7158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5917 6844..7158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5917.14391.1prot_L-elsbetiae_contig5917.14391.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5917 6844..7158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5917.14391.1

>prot_L-elsbetiae_contig5917.14391.1 ID=prot_L-elsbetiae_contig5917.14391.1|Name=mRNA_L-elsbetiae_contig5917.14391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
ATARPHRQQQRRRRHDLALAHLARLAHLRPAVRGVSVPAPSSGRGGAVAA
LDLQELHQPPDGDQAGAPLPAEERLAQREHHRVLQAGAQPEEGRHGHEEA
LGDGR
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mRNA from alignment at L-elsbetiae_contig5917:6844..7159+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5917.14391.1 ID=mRNA_L-elsbetiae_contig5917.14391.1|Name=mRNA_L-elsbetiae_contig5917.14391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=316bp|location=Sequence derived from alignment at L-elsbetiae_contig5917:6844..7159+ (Laminarionema elsbetiae ELsaHSoW15)
GCCACCGCCCGACCCCACCGGCAGCAACAGCGGAGGCGGCGGCATGACCT
GGCCCTCGCTCATCTGGCTCGTCTGGCTCATCTGCGTCCCGCCGTGCGAG
GAGTCTCCGTCCCCGCCCCGAGCAGCGGCCGCGGCGGCGCTGTTGCGGCT
CTGGACCTTCAGGAGCTGCACCAGCCCCCCGACGGCGACCAGGCGGGCGC
GCCACTCCCGGCTGAAGAGCGCCTTGCGCAGCGGGAGCACCACCGAGTCC
TGCAGGCGGGGGCGCAGCCGGAGGAGGGGCGCCACGGCCACGAGGAAGCG
CTCGGCGACGGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5917:6844..7159+

>mRNA_L-elsbetiae_contig5917.14391.1 ID=mRNA_L-elsbetiae_contig5917.14391.1|Name=mRNA_L-elsbetiae_contig5917.14391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig5917:6844..7159+ (Laminarionema elsbetiae ELsaHSoW15)
GCCACCGCCCGACCCCACCGGCAGCAACAGCGGAGGCGGCGGCATGACCT
GGCCCTCGCTCATCTGGCTCGTCTGGCTCATCTGCGTCCCGCCGTGCGAG
GAGTCTCCGTCCCCGCCCCGAGCAGCGGCCGCGGCGGCGCTGTTGCGGCT
CTGGACCTTCAGGAGCTGCACCAGCCCCCCGACGGCGACCAGGCGGGCGC
GCCACTCCCGGCTGAAGAGCGCCTTGCGCAGCGGGAGCACCACCGAGTCC
TGCAGGCGGGGGCGCAGCCGGAGGAGGGGCGCCACGGCCACGAGGAAGCG
CTCGGCGACGGGCGGGCCACCGCCCGACCCCACCGGCAGCAACAGCGGAG
GCGGCGGCATGACCTGGCCCTCGCTCATCTGGCTCGTCTGGCTCATCTGC
GTCCCGCCGTGCGAGGAGTCTCCGTCCCCGCCCCGAGCAGCGGCCGCGGC
GGCGCTGTTGCGGCTCTGGACCTTCAGGAGCTGCACCAGCCCCCCGACGG
CGACCAGGCGGGCGCGCCACTCCCGGCTGAAGAGCGCCTTGCGCAGCGGG
AGCACCACCGAGTCCTGCAGGCGGGGGCGCAGCCGGAGGAGGGGCGCCAC
GGCCACGAGGAAGCGCTCGGCGACGGGCGG
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