mRNA_L-elsbetiae_contig5910.14386.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5910.14386.1
Unique NamemRNA_L-elsbetiae_contig5910.14386.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5910.14386.1 vs. uniprot
Match: A0A6H5J9H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H6_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.700e-37
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 1
Query:    1 GRYHSILFFSIVYLVGLFVAAGSCVPGSVSPLLLFPAIYLLALGTGGIKSSVSVFGADQFDDDDPADVEEKQSFFNW 231
            GRYHSIL FS++YLVGLFVAA SCVPGSVSPL+LFPAIYLLALGTGGIKSSVSVFGADQFD+DDPADV EKQSFFNW
Sbjct:  147 GRYHSILCFSVIYLVGLFVAAASCVPGSVSPLVLFPAIYLLALGTGGIKSSVSVFGADQFDEDDPADVNEKQSFFNW 223          
BLAST of mRNA_L-elsbetiae_contig5910.14386.1 vs. uniprot
Match: A0A7R9UH25_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH25_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.120e-18
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 GRYHSILFFSIVYLVGLFVAAGSCVPGSVSPLLLFPAIYLLALGTGGIKSSVSVFGADQFDDDDPADVEEKQSFFNW 231
            GRY++IL    +YL GL +     +PG+ S  +++P +Y++A GTGGIK +VS FGADQFDDD+  D +EK+SFFNW
Sbjct:   52 GRYNTILILCALYLSGLVLMVFGAIPGAESEAVIYPGLYIIAFGTGGIKPNVSTFGADQFDDDNEQDKKEKESFFNW 128          
BLAST of mRNA_L-elsbetiae_contig5910.14386.1 vs. uniprot
Match: A0A7S1CW14_9CHLO (Hypothetical protein n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CW14_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 3.380e-16
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 GRYHSILFFSIVYLVGLFVAAGSC-----VPGSVS---PL---LLFPAIYLLALGTGGIKSSVSVFGADQFDDDDPADVEEKQSFFNW 231
            GRY +IL FS++Y VG+ + AGS       P S S   PL    L+ ++Y++ALGTGGIK +VS FGADQFD+ DP D +EK+SFFNW
Sbjct:   94 GRYRTILVFSLIYFVGMTMLAGSAFLPGLTPDSTSVATPLQNAALYVSLYVVALGTGGIKPNVSAFGADQFDELDPRDRKEKKSFFNW 181          
BLAST of mRNA_L-elsbetiae_contig5910.14386.1 vs. uniprot
Match: A0A5B8MGU7_9CHLO (Proton-dependent oligopeptide transporter n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MGU7_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 6.320e-16
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 GRYHSILFFSIVYLVGLFVAAGSCVPGSVS-------PLLLFPAIYLLALGTGGIKSSVSVFGADQFDDDDPADVEEKQSFFNW 231
            GRY +I+ FS +YLVGL + AG+ V    +        LLLF A+Y++A+GTGGIK +VS FGADQFD++ P   +EK+SFFNW
Sbjct:  147 GRYKTIMVFSSIYLVGLMLLAGANVAVDETNLSWVQVQLLLFVALYIIAVGTGGIKPNVSSFGADQFDENIPKQKKEKESFFNW 230          
BLAST of mRNA_L-elsbetiae_contig5910.14386.1 vs. uniprot
Match: A0A7S3UCF6_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCF6_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 8.600e-16
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 GRYHSILFFSIVYLVGLF-VAAGSCVPGSVSPL----------LLFPAIYLLALGTGGIKSSVSVFGADQFDDDDPADVEEKQSFFNW 231
            GRY +I+ FS +Y VG+F +A  + VP    PL          +LF ++YL+ALGTGGIK +VS FGADQFD+++  DV EK+SFFNW
Sbjct:  102 GRYRTIVLFSSIYCVGMFSLALSAAVPLLHPPLDKYPNFMQNAVLFGSLYLIALGTGGIKPNVSAFGADQFDENNERDVNEKKSFFNW 189          
BLAST of mRNA_L-elsbetiae_contig5910.14386.1 vs. uniprot
Match: I1JHA8_SOYBN (Uncharacterized protein n=5 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1JHA8_SOYBN)

HSP 1 Score: 79.7 bits (195), Expect = 1.170e-15
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    1 GRYHSILFFSIVYLVGLFVAA---------------GSCVPGSVSPLLLFPAIYLLALGTGGIKSSVSVFGADQFDDDDPADVEEKQSFFNW 231
            GRY +IL+FSIVY++G+ +                 G+C        + F A+YL+ALGTGGIK  VS FGADQFDD D A+ E K SFFNW
Sbjct:   94 GRYRTILYFSIVYVIGMTLLTLSASVPGIKPSCDDQGNCHATEAQSAMCFVALYLIALGTGGIKPCVSSFGADQFDDADEAEKEHKSSFFNW 185          
BLAST of mRNA_L-elsbetiae_contig5910.14386.1 vs. uniprot
Match: A0A2P6TN44_CHLSO (NRT1 PTR FAMILY-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TN44_CHLSO)

HSP 1 Score: 79.7 bits (195), Expect = 1.210e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 GRYHSILFFSIVYLVGLFVAAGSCVPGSVSP-----------LLLFPAIYLLALGTGGIKSSVSVFGADQFDDDDPADVEEKQSFFNW 231
            GRY +IL FS++YL+G+ + A S     ++P             L+ ++Y++ALGTGGIK +VS FGADQFD+ DP D  EK SFFNW
Sbjct:   93 GRYKTILIFSVIYLLGMILLAFSAWAPGLTPGPDEYSTPLQNAFLYASLYIVALGTGGIKPNVSAFGADQFDEADPQDRREKTSFFNW 180          
BLAST of mRNA_L-elsbetiae_contig5910.14386.1 vs. uniprot
Match: E1ZBM1_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZBM1_CHLVA)

HSP 1 Score: 79.0 bits (193), Expect = 2.100e-15
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 GRYHSILFFSIVYLVGL-FVAAGSCVPGSV-------SPL---LLFPAIYLLALGTGGIKSSVSVFGADQFDDDDPADVEEKQSFFNW 231
            GRY +I+ FS++Y +G+  +A  + +PG         SPL   +L+ ++Y++ALGTGGIK +VS FGADQFD+ DP D  EK SFFNW
Sbjct:   83 GRYKTIIVFSVIYFLGMVLLAVSAALPGLTPTPDKYASPLQNAVLYGSLYIIALGTGGIKPNVSAFGADQFDEADPQDRREKTSFFNW 170          
BLAST of mRNA_L-elsbetiae_contig5910.14386.1 vs. uniprot
Match: A0A1S3UBZ6_VIGRR (protein NRT1/ PTR FAMILY 8.1 n=6 Tax=Phaseoleae TaxID=163735 RepID=A0A1S3UBZ6_VIGRR)

HSP 1 Score: 79.0 bits (193), Expect = 2.180e-15
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 GRYHSILFFSIVYLVGLFV---------------AAGSCVPGSVSPLLLFPAIYLLALGTGGIKSSVSVFGADQFDDDDPADVEEKQSFFNW 231
            GRY +IL+FS+VY++G+ +               A G+C     +  + F A+YL+ALGTGGIK  VS FGADQFDD D A+ E K SFFNW
Sbjct:   94 GRYLTILYFSVVYVIGMTLLTLSASVSGMKPTCDAQGNCHATEGNSAICFVALYLIALGTGGIKPCVSSFGADQFDDADEAEKEHKSSFFNW 185          
BLAST of mRNA_L-elsbetiae_contig5910.14386.1 vs. uniprot
Match: I0YMS7_COCSC (PTR2-domain-containing protein (Fragment) n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YMS7_COCSC)

HSP 1 Score: 78.2 bits (191), Expect = 4.080e-15
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 GRYHSILFFSIVYLVGLFVAAGSC-VPGSVSPL-----------LLFPAIYLLALGTGGIKSSVSVFGADQFDDDDPADVEEKQSFFNW 231
            GR++ IL FSI+Y VG+   A S  +PG    +            LF ++Y++ALGTGGIK +VS FGADQFD+ DP D  EK+SFFNW
Sbjct:   59 GRFYCILVFSIIYFVGMVALALSAWIPGLTPDIDADSSKWYQSAFLFGSLYIVALGTGGIKPNVSAFGADQFDESDPQDRLEKKSFFNW 147          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5910.14386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9H6_9PHAE1.700e-3790.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9UH25_9STRA3.120e-1851.95Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1CW14_9CHLO3.380e-1653.41Hypothetical protein n=1 Tax=Picochlorum oklahomen... [more]
A0A5B8MGU7_9CHLO6.320e-1652.38Proton-dependent oligopeptide transporter n=1 Tax=... [more]
A0A7S3UCF6_9CHLO8.600e-1651.14Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
I1JHA8_SOYBN1.170e-1547.83Uncharacterized protein n=5 Tax=Glycine subgen. So... [more]
A0A2P6TN44_CHLSO1.210e-1547.73NRT1 PTR FAMILY-like n=1 Tax=Chlorella sorokiniana... [more]
E1ZBM1_CHLVA2.100e-1548.86Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A1S3UBZ6_VIGRR2.180e-1547.83protein NRT1/ PTR FAMILY 8.1 n=6 Tax=Phaseoleae Ta... [more]
I0YMS7_COCSC4.080e-1549.44PTR2-domain-containing protein (Fragment) n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5910contigL-elsbetiae_contig5910:63..296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.5
Seed ortholog evalue3.9e-13
Seed eggNOG ortholog3847.GLYMA02G38970.1
KEGG koko:K14638
KEGG TC2.A.17.3
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0006807,GO:0006810,GO:0006857,GO:0008150,GO:0008152,GO:0009506,GO:0015833,GO:0016020,GO:0022857,GO:0030054,GO:0035672,GO:0035673,GO:0042886,GO:0042887,GO:0042937,GO:0042938,GO:0042939,GO:0044464,GO:0051179,GO:0051234,GO:0055044,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:1904680
EggNOG free text desc.Protein NRT1 PTR FAMILY
EggNOG OGs37IEX@33090,3G7JK@35493,4JJYM@91835,COG3104@1,KOG1237@2759
COG Functional cat.E
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.6306257-CDS-L-elsbetiae_contig5910:62..2961622816639.6306257-CDS-L-elsbetiae_contig5910:62..296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5910 63..296 +
1691683704.6362813-CDS-L-elsbetiae_contig5910:62..2961691683704.6362813-CDS-L-elsbetiae_contig5910:62..296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5910 63..296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5910.14386.1prot_L-elsbetiae_contig5910.14386.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5910 63..296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5910.14386.1

>prot_L-elsbetiae_contig5910.14386.1 ID=prot_L-elsbetiae_contig5910.14386.1|Name=mRNA_L-elsbetiae_contig5910.14386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
GRYHSILFFSIVYLVGLFVAAGSCVPGSVSPLLLFPAIYLLALGTGGIKS
SVSVFGADQFDDDDPADVEEKQSFFNW*
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mRNA from alignment at L-elsbetiae_contig5910:63..296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5910.14386.1 ID=mRNA_L-elsbetiae_contig5910.14386.1|Name=mRNA_L-elsbetiae_contig5910.14386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig5910:63..296+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCGCTACCACAGCATCCTGTTTTTTTCGATAGTCTACCTGGTGGGGCT TTTCGTGGCGGCGGGCTCCTGCGTCCCCGGCTCGGTGTCGCCGCTGCTGC TGTTCCCGGCGATCTACCTCCTCGCGCTGGGGACGGGGGGCATCAAGTCC AGCGTCTCGGTGTTCGGAGCGGACCAGTTCGACGACGATGACCCCGCAGA CGTAGAGGAGAAGCAGTCCTTCTTCAACTGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5910:63..296+

>mRNA_L-elsbetiae_contig5910.14386.1 ID=mRNA_L-elsbetiae_contig5910.14386.1|Name=mRNA_L-elsbetiae_contig5910.14386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig5910:63..296+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCGCTACCACAGCATCCTGTTTTTTTCGATAGTCTACCTGGTGGGGCT
TTTCGTGGCGGCGGGCTCCTGCGTCCCCGGCTCGGTGTCGCCGCTGCTGC
TGTTCCCGGCGATCTACCTCCTCGCGCTGGGGACGGGGGGCATCAAGTCC
AGCGTCTCGGTGTTCGGAGCGGACCAGTTCGACGACGATGACCCCGCAGA
CGTAGAGGAGAAGCAGTCCTTCTTCAACTGGTGAGGCCGCTACCACAGCA
TCCTGTTTTTTTCGATAGTCTACCTGGTGGGGCTTTTCGTGGCGGCGGGC
TCCTGCGTCCCCGGCTCGGTGTCGCCGCTGCTGCTGTTCCCGGCGATCTA
CCTCCTCGCGCTGGGGACGGGGGGCATCAAGTCCAGCGTCTCGGTGTTCG
GAGCGGACCAGTTCGACGACGATGACCCCGCAGACGTAGAGGAGAAGCAG
TCCTTCTTCAACTGGTGA
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