mRNA_L-elsbetiae_contig5907.14381.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5907.14381.1
Unique NamemRNA_L-elsbetiae_contig5907.14381.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5907.14381.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.590e-64
Identity = 161/380 (42.37%), Postives = 209/380 (55.00%), Query Frame = 2 
Query:    2 QHMMVHDIRGGKRLVPHFRVTVRDLLRLLVEEEWGRTFTRKAAGDAFNSITINPRESWLAAASRLVQYYRASTVDTDAPYASEVPYMWSLMTATQLDLLQGKTLELCIASPFDRQGKEAQLQMRKEQYEPTLEAMPVIRQELGLQHMVNRGEFVREIHIKFSQNLAKDAGKYTQPAASGSRQTDVNLLRSNKIPIAMRMSSSQALSHMDQRKPSA-LCAVAGEGDGE------------------EPVASAGHKTQDEQPVA----EHLAAMDPPSEDNRRKRRWTDKHMSFSSPHSYIESSRSRQRRSSPDNRSISSSSRQEGVPR--RQQGTSSQGASAGGGHTQERSSGRQKPMPTEELPLDAPRPGTAPKAIDAYI 1066
            Q M +HD+RGGKR VP   VTV D LRL +EEEW +  T+ AA  AFNSI I P+ESWLA A R++Q YRASTVD   P+ +E  Y WS ++A QL+L+Q KT+ELCI S  DR  KEA LQ+++E + P LEAMPV++  +GLQ M  RG  V+ I  KFSQ LAKDAGKY QP+    +  +VN L+SNK+PI +        +  D RKP+A LCA+    D                      V   G     + P      E L A+  P + + RKR+WTD+           E+SR+ + R S D+R           PR   +QGT S G              R++ MP  ELPLDAP+P +AP+ I  YI
Sbjct:  294 QDMKIHDLRGGKRSVPQTHVTVMDFLRLFLEEEWRKHATKVAASTAFNSIQIRPQESWLAVAERVIQIYRASTVDPALPFLTEETYFWSQLSADQLELIQEKTIELCIPSTTDRAAKEALLQVQREYHGPRLEAMPVVKHLVGLQQMNERGALVKSIFKKFSQGLAKDAGKYLQPSQQP-KTAEVNTLKSNKMPIHLAAQQLPTRTSADSRKPAAPLCAIGDADDNNTFEDXXXXXXXXXXIIDTSRVDFEGTFGNFDYPSGTSGTEQLMALAHP-DGSTRKRQWTDQ-----------ETSRAARPRRSIDDRP--------NAPRLSERQGTFSPGTXXXXXXXXX----RKRAMPKAELPLDAPKPDSAPEEIKRYI 648
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BLAST of mRNA_L-elsbetiae_contig5907.14381.1 vs. uniprot
Match: A0A6H5KW13_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW13_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 4.830e-49
Identity = 130/355 (36.62%), Postives = 201/355 (56.62%), Query Frame = 2 
Query:    8 MMVHDIRGGKRLVPHFRVTVRDLLRLLVEEEWGRTFTRKAAGDAFNSITINPRESWLAAASRLVQYYRASTVDTDAPYASEVPYMWSLMTATQLDLLQGKTLELCIASPFDRQGKEAQLQMRKEQYEPTLEAMPVIRQELGLQHMVNRGEFVREIHIKFSQNLAKDAGKYTQPAASGSRQT-DVNLLRSNKIPIAMRMSSSQALSHMDQRKPSALCAVAGEGDGEEPVASAGHKTQD-----------EQPVAEHLAAMDPPSEDNRRKRRWTDKHMSFSSPHSYIESSRSRQRRSSPDNRSISSSSRQEGVPRRQQGTSSQGASAGGGHTQ-ERSSGRQKPMPTEELPLDAPRP 1033
            M++HD+RGGK+ +PH  V+ RD+LRL++EEE+ ++ T++ A   F+++++ P++SW+AA +R++Q YRA+T D +APYASE  + WS ++  QL+LL GK +++C+ S  DR  ++A+L +++  YEP L AMP+++  LGL +M  R  FV+ I+  F+  L +D GKY    +  + Q+ DV+ ++SN+ PI +  S S         KP AL AV   GD E+    A + T D            QP  + LAA+  P    R+++R  D+H S ++P         R +R   D  +          P   Q T S GA   GG    + S  R  PMP  ELP DAP+P
Sbjct:  294 MLIHDLRGGKQPMPHHLVSARDILRLVMEEEYQKSATKQTAALVFDNLSVQPKDSWVAAIARVLQSYRAATADPEAPYASEDFHCWSQLSTDQLELLLGKIIQVCVTSDADRTAQQARLLVKRTTYEPQLNAMPIVKHNLGLPNMRRRRGFVKSIYTDFAHVLTRDTGKYDVTLSKTAGQSADVHAVQSNRRPIRLHQSPSPT--QRGAHKPGALFAV---GDDED--FDATNDTSDGFNAFNSFDTSSQPP-DQLAALASPGAFTRKRQR-DDQHQSPAAP---------RPKRHFNDRPTTQR-------PVGGQRTFSSGAQPRGGRNHGQHSRRRAMPMPKAELPADAPKP 623
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BLAST of mRNA_L-elsbetiae_contig5907.14381.1 vs. uniprot
Match: A0A6H5KGS7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS7_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.940e-45
Identity = 96/193 (49.74%), Postives = 131/193 (67.88%), Query Frame = 2 
Query:   86 LVEEEWGRTFTRKAAGDAFNSITINPRESWLAAASRLVQYYRASTVDTDAPYASEVPYMWSLMTATQLDLLQGKTLELCIASPFDRQGKEAQLQMRKEQYEPTLEAMPVIRQELGLQHMVNRGEFVREIHIKFSQNLAKDAGKYTQPAASGSRQTDVNLLRSNKIPIAMRMSSSQALSHM-DQRKPSA-LCAV 658
            ++EEEW +  T+ AA  AFNSI I P+ESWLA A R++Q YRASTVD   P+ +E    WS ++A QL+L+Q KT+ELCI S  DR  KE  LQ++++ + P LE MPV++  +GL+HM +RG  V+ I  KFSQ LAKDAGKY QP+       +VN L+SNK+PI  R+++ Q  +   D RKP+A  CA+
Sbjct:   22 VLEEEWRKHATKVAASTAFNSIQIRPKESWLAVAERVIQIYRASTVDPGLPFLTEETNFWSQLSADQLELIQEKTIELCIPSTTDRAAKETLLQVQRDYHGPQLEVMPVVKHLVGLRHMNDRGALVKSIFKKFSQGLAKDAGKYLQPSQQP-WTAEVNTLKSNKMPI--RLAAQQLPTRTSDSRKPAAPFCAI 211
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BLAST of mRNA_L-elsbetiae_contig5907.14381.1 vs. uniprot
Match: A0A6H5JPM0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPM0_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 3.720e-37
Identity = 89/198 (44.95%), Postives = 117/198 (59.09%), Query Frame = 2 
Query:    2 QHMMVHDIRGGKRLVPHFRVTVRDLLRLLVEEEWGRTFTRKAAGDAFNSITINPRESWLAAASRLVQYYRASTVDTDAPYASEVPYMWSLMTATQLDLLQGKTLELCIASPFDRQGKEAQLQMRKEQYEPTLEAMPVIRQELGLQHMVNRGEFVREIHIKFSQNLAKDAGKYTQPAASGSRQTDVNLLRSNKIPIAMR 595
            Q M++HD+RGGKR VPH  VT  DLL L+ EEE     TR+AA  AFN+I I P+ES  AA  RLVQY R S+VD DAPY +E  Y   L+    L +L+ K+L+LC     DR   EAQL   ++ Y   L  M  IR ELG  +MV RG   ++I   FS  ++++AGK    A   + +  ++ L SNKIP+  R
Sbjct:  335 QEMLIHDVRGGKRYVPHHLVTAVDLLWLVAEEEAREHATRRAAIAAFNNIVIGPKES--AAQGRLVQYLRVSSVDLDAPYTTEEEYFRQLLAMRDLQVLEEKSLQLCFPEWSDRMPWEAQLYTLRDTYRQELNNMQAIRHELGSPYMVQRGRSTKKIFTNFSNTISQEAGKCKTAAPRPAAK--MSALASNKIPLQTR 528
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5907.14381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KNP4_9PHAE1.590e-6442.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KW13_9PHAE4.830e-4936.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGS7_9PHAE3.940e-4549.74Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JPM0_9PHAE3.720e-3744.95Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5907contigL-elsbetiae_contig5907:3445..4513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_007420.1
Exons1
Model size1071
Cds size1062
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.983804-UTR-L-elsbetiae_contig5907:3444..34511622816638.983804-UTR-L-elsbetiae_contig5907:3444..3451Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5907 3445..3451 +
1691683704.1400228-UTR-L-elsbetiae_contig5907:3444..34511691683704.1400228-UTR-L-elsbetiae_contig5907:3444..3451Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5907 3445..3451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.9979377-CDS-L-elsbetiae_contig5907:3451..45131622816638.9979377-CDS-L-elsbetiae_contig5907:3451..4513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5907 3452..4513 +
1691683704.1526136-CDS-L-elsbetiae_contig5907:3451..45131691683704.1526136-CDS-L-elsbetiae_contig5907:3451..4513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5907 3452..4513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5907.14381.1prot_L-elsbetiae_contig5907.14381.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5907 3452..4513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5907.14381.1

>prot_L-elsbetiae_contig5907.14381.1 ID=prot_L-elsbetiae_contig5907.14381.1|Name=mRNA_L-elsbetiae_contig5907.14381.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=354bp
MMVHDIRGGKRLVPHFRVTVRDLLRLLVEEEWGRTFTRKAAGDAFNSITI
NPRESWLAAASRLVQYYRASTVDTDAPYASEVPYMWSLMTATQLDLLQGK
TLELCIASPFDRQGKEAQLQMRKEQYEPTLEAMPVIRQELGLQHMVNRGE
FVREIHIKFSQNLAKDAGKYTQPAASGSRQTDVNLLRSNKIPIAMRMSSS
QALSHMDQRKPSALCAVAGEGDGEEPVASAGHKTQDEQPVAEHLAAMDPP
SEDNRRKRRWTDKHMSFSSPHSYIESSRSRQRRSSPDNRSISSSSRQEGV
PRRQQGTSSQGASAGGGHTQERSSGRQKPMPTEELPLDAPRPGTAPKAID
AYIR
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mRNA from alignment at L-elsbetiae_contig5907:3445..4513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5907.14381.1 ID=mRNA_L-elsbetiae_contig5907.14381.1|Name=mRNA_L-elsbetiae_contig5907.14381.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1069bp|location=Sequence derived from alignment at L-elsbetiae_contig5907:3445..4513+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGCATATGATGGTACACGACATCCGCGGCGGCAAGCGCCTCGTGCCGC
ACTTCCGTGTCACCGTCCGGGACCTTCTACGCCTTCTAGTCGAGGAGGAG
TGGGGAAGGACATTCACAAGGAAGGCAGCCGGCGACGCCTTCAACTCCAT
CACCATCAATCCGAGGGAGTCATGGCTGGCGGCGGCAAGCCGCTTGGTGC
AATACTACAGGGCTTCTACGGTGGACACCGACGCGCCGTATGCATCTGAG
GTCCCTTACATGTGGTCCCTGATGACGGCCACGCAGCTGGATCTCCTCCA
AGGAAAGACGCTCGAGCTGTGCATCGCCTCACCTTTCGACAGGCAGGGGA
AGGAAGCGCAACTTCAGATGCGCAAAGAACAGTACGAGCCGACCCTAGAA
GCCATGCCAGTCATCCGGCAAGAGCTGGGGCTTCAACACATGGTCAACCG
TGGGGAATTCGTGAGAGAGATCCACATCAAATTCTCGCAGAATCTGGCCA
AGGACGCCGGGAAGTACACTCAGCCCGCGGCGTCAGGCTCGCGGCAGACG
GACGTCAACCTGCTGAGGTCTAATAAAATTCCAATCGCCATGCGCATGTC
CTCCAGCCAGGCGCTGTCTCACATGGACCAGCGCAAGCCATCGGCTCTCT
GCGCCGTCGCAGGAGAAGGAGACGGAGAGGAGCCCGTCGCCAGCGCCGGG
CACAAGACACAAGACGAGCAGCCGGTCGCCGAACACCTGGCGGCGATGGA
CCCGCCATCGGAGGACAACAGGCGCAAGCGGCGGTGGACAGACAAACACA
TGTCGTTCAGCTCTCCGCACAGCTACATCGAGTCGTCGAGGTCTCGACAG
CGCCGGAGTTCGCCCGACAACCGCAGCATCTCGAGCTCCTCACGACAGGA
AGGAGTTCCTCGCAGGCAGCAGGGAACGTCCTCCCAAGGTGCGTCGGCAG
GTGGAGGCCACACCCAAGAGCGTTCCTCGGGCCGCCAGAAGCCCATGCCC
ACGGAGGAGCTACCGCTGGATGCTCCGAGGCCCGGCACGGCACCGAAGGC
TATCGATGCCTACATCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5907:3445..4513+

>mRNA_L-elsbetiae_contig5907.14381.1 ID=mRNA_L-elsbetiae_contig5907.14381.1|Name=mRNA_L-elsbetiae_contig5907.14381.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2124bp|location=Sequence derived from alignment at L-elsbetiae_contig5907:3445..4513+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGTACACGACATCCGCGGCGGCAAGCGCCTCGTGCCGCACTTCCG
TGTCACCGTCCGGGACCTTCTACGCCTTCTAGTCGAGGAGGAGTGGGGAA
GGACATTCACAAGGAAGGCAGCCGGCGACGCCTTCAACTCCATCACCATC
AATCCGAGGGAGTCATGGCTGGCGGCGGCAAGCCGCTTGGTGCAATACTA
CAGGGCTTCTACGGTGGACACCGACGCGCCGTATGCATCTGAGGTCCCTT
ACATGTGGTCCCTGATGACGGCCACGCAGCTGGATCTCCTCCAAGGAAAG
ACGCTCGAGCTGTGCATCGCCTCACCTTTCGACAGGCAGGGGAAGGAAGC
GCAACTTCAGATGCGCAAAGAACAGTACGAGCCGACCCTAGAAGCCATGC
CAGTCATCCGGCAAGAGCTGGGGCTTCAACACATGGTCAACCGTGGGGAA
TTCGTGAGAGAGATCCACATCAAATTCTCGCAGAATCTGGCCAAGGACGC
CGGGAAGTACACTCAGCCCGCGGCGTCAGGCTCGCGGCAGACGGACGTCA
ACCTGCTGAGGTCTAATAAAATTCCAATCGCCATGCGCATGTCCTCCAGC
CAGGCGCTGTCTCACATGGACCAGCGCAAGCCATCGGCTCTCTGCGCCGT
CGCAGGAGAAGGAGACGGAGAGGAGCCCGTCGCCAGCGCCGGGCACAAGA
CACAAGACGAGCAGCCGGTCGCCGAACACCTGGCGGCGATGGACCCGCCA
TCGGAGGACAACAGGCGCAAGCGGCGGTGGACAGACAAACACATGTCGTT
CAGCTCTCCGCACAGCTACATCGAGTCGTCGAGGTCTCGACAGCGCCGGA
GTTCGCCCGACAACCGCAGCATCTCGAGCTCCTCACGACAGGAAGGAGTT
CCTCGCAGGCAGCAGGGAACGTCCTCCCAAGGTGCGTCGGCAGGTGGAGG
CCACACCCAAGAGCGTTCCTCGGGCCGCCAGAAGCCCATGCCCACGGAGG
AGCTACCGCTGGATGCTCCGAGGCCCGGCACGGCACCGAAGGCTATCGAT
GCCTACATCAGGATGATGGTACACGACATCCGCGGCGGCAAGCGCCTCGT
GCCGCACTTCCGTGTCACCGTCCGGGACCTTCTACGCCTTCTAGTCGAGG
AGGAGTGGGGAAGGACATTCACAAGGAAGGCAGCCGGCGACGCCTTCAAC
TCCATCACCATCAATCCGAGGGAGTCATGGCTGGCGGCGGCAAGCCGCTT
GGTGCAATACTACAGGGCTTCTACGGTGGACACCGACGCGCCGTATGCAT
CTGAGGTCCCTTACATGTGGTCCCTGATGACGGCCACGCAGCTGGATCTC
CTCCAAGGAAAGACGCTCGAGCTGTGCATCGCCTCACCTTTCGACAGGCA
GGGGAAGGAAGCGCAACTTCAGATGCGCAAAGAACAGTACGAGCCGACCC
TAGAAGCCATGCCAGTCATCCGGCAAGAGCTGGGGCTTCAACACATGGTC
AACCGTGGGGAATTCGTGAGAGAGATCCACATCAAATTCTCGCAGAATCT
GGCCAAGGACGCCGGGAAGTACACTCAGCCCGCGGCGTCAGGCTCGCGGC
AGACGGACGTCAACCTGCTGAGGTCTAATAAAATTCCAATCGCCATGCGC
ATGTCCTCCAGCCAGGCGCTGTCTCACATGGACCAGCGCAAGCCATCGGC
TCTCTGCGCCGTCGCAGGAGAAGGAGACGGAGAGGAGCCCGTCGCCAGCG
CCGGGCACAAGACACAAGACGAGCAGCCGGTCGCCGAACACCTGGCGGCG
ATGGACCCGCCATCGGAGGACAACAGGCGCAAGCGGCGGTGGACAGACAA
ACACATGTCGTTCAGCTCTCCGCACAGCTACATCGAGTCGTCGAGGTCTC
GACAGCGCCGGAGTTCGCCCGACAACCGCAGCATCTCGAGCTCCTCACGA
CAGGAAGGAGTTCCTCGCAGGCAGCAGGGAACGTCCTCCCAAGGTGCGTC
GGCAGGTGGAGGCCACACCCAAGAGCGTTCCTCGGGCCGCCAGAAGCCCA
TGCCCACGGAGGAGCTACCGCTGGATGCTCCGAGGCCCGGCACGGCACCG
AAGGCTATCGATGCCTACATCAGG
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