mRNA_L-elsbetiae_contig5905.14378.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5905.14378.1
Unique NamemRNA_L-elsbetiae_contig5905.14378.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5905.14378.1 vs. uniprot
Match: D8LBL7_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL7_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 4.930e-105
Identity = 157/160 (98.12%), Postives = 159/160 (99.38%), Query Frame = 2 
Query:  122 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAANGNQGPSRRR 601
            MINF+LLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARA KMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMD+LMEEAKEEAANGNQGPSRRR
Sbjct:    1 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARALKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDDLMEEAKEEAANGNQGPSRRR 160
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BLAST of mRNA_L-elsbetiae_contig5905.14378.1 vs. uniprot
Match: A0A7S4A8C4_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8C4_9STRA)

HSP 1 Score: 265 bits (676), Expect = 2.230e-87
Identity = 130/160 (81.25%), Postives = 149/160 (93.12%), Query Frame = 2 
Query:  122 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEE-AANGNQGPSRR 598
            MINF+LL+SRQGKTRLTKWY++Y+AKEKAR VREITSTVLARAPKMCNFVEWR+KKI+YKRYASLFF+ C+D +DNELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDE+F+GGEL ESSKKEVL VC+QMDELMEE +E+ AA+G+ G  R+
Sbjct:    1 MINFLLLVSRQGKTRLTKWYESYAAKEKARIVREITSTVLARAPKMCNFVEWRNKKIIYKRYASLFFIVCVDAEDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDEIFVGGELCESSKKEVLSVCAQMDELMEEREEDKAASGSSGRVRK 160
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BLAST of mRNA_L-elsbetiae_contig5905.14378.1 vs. uniprot
Match: A0A835Z7C9_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C9_9STRA)

HSP 1 Score: 261 bits (668), Expect = 2.890e-86
Identity = 124/151 (82.12%), Postives = 144/151 (95.36%), Query Frame = 2 
Query:  122 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAAN 574
            M+NF+LL+SRQGKTRLTKWY+ Y++KEKAR VREIT+ VLAR PKMCNF+EWRDKKIVYKRYASLFFVAC+D+DDNELITLE+IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVC Q+D+LME+ +++ ++
Sbjct:    1 MLNFLLLVSRQGKTRLTKWYEAYTSKEKARIVREITTLVLARPPKMCNFLEWRDKKIVYKRYASLFFVACVDRDDNELITLEQIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCGQIDDLMEDVRDDGSS 151
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BLAST of mRNA_L-elsbetiae_contig5905.14378.1 vs. uniprot
Match: A0A7S2SD76_9STRA (AP complex subunit sigma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD76_9STRA)

HSP 1 Score: 261 bits (666), Expect = 1.190e-85
Identity = 126/162 (77.78%), Postives = 146/162 (90.12%), Query Frame = 2 
Query:   95 SARDRTASTMINFMLLISRQGKTRLTKWYQTY-SAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAANG 577
            S+R      MINFMLLISRQGKTRLTKWY++Y S KEKAR VREIT+ VL+R PK+CNF+EWRDKK++YKRYASLFFVAC+D++DNEL+TLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFI GELQESSKKEVL VC+QMDE+M+E+K+E  +G
Sbjct:    5 SSRGERHGAMINFMLLISRQGKTRLTKWYESYGSTKEKARIVREITAMVLSRPPKLCNFIEWRDKKVIYKRYASLFFVACVDKEDNELVTLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFINGELQESSKKEVLSVCAQMDEMMDESKDEGTSG 166
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BLAST of mRNA_L-elsbetiae_contig5905.14378.1 vs. uniprot
Match: A0A7S2XUT6_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUT6_9STRA)

HSP 1 Score: 256 bits (654), Expect = 4.310e-84
Identity = 124/151 (82.12%), Postives = 136/151 (90.07%), Query Frame = 2 
Query:  122 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAAN 574
            MINFMLLISRQGKTRLTKWY +Y  KEKAR +REITS VL R PKMCNF+EW+DKKIVYKRYASLFFV CID+ DNELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELFI GELQES K+EVLR+C QMD++MEE KE+ +N
Sbjct:    1 MINFMLLISRQGKTRLTKWYDSYGTKEKARIMREITSMVLNRPPKMCNFIEWKDKKIVYKRYASLFFVVCIDKGDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFIAGELQESGKREVLRICGQMDDMMEEGKEDVSN 151
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BLAST of mRNA_L-elsbetiae_contig5905.14378.1 vs. uniprot
Match: W7T3W8_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3W8_9STRA)

HSP 1 Score: 255 bits (652), Expect = 1.030e-83
Identity = 121/148 (81.76%), Postives = 137/148 (92.57%), Query Frame = 2 
Query:  122 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEE 565
            MINF+LL+SRQGKTRL+KWY+ Y+ KEKAR +RE+T+ VLARAPKMCNF+EWRDKK++YKRYASLFF+A +D  DNELITLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFIGG LQESSK EVLRVCSQMDELMEE K++
Sbjct:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDD 148
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BLAST of mRNA_L-elsbetiae_contig5905.14378.1 vs. uniprot
Match: A0A7S3LZF2_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZF2_9STRA)

HSP 1 Score: 249 bits (635), Expect = 7.250e-81
Identity = 117/149 (78.52%), Postives = 139/149 (93.29%), Query Frame = 2 
Query:  119 TMINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEE 565
            TMINF+LL+SRQGKTRL+KW+   +AKEK R VRE+T+TVL+R PKMCNF+EW+DKK++YKRYASLFFVAC+D++DNELI LE+IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGG LQE+SK EVLR+C+ MDE+M+E+KEE
Sbjct:   17 TMINFILLVSRQGKTRLSKWFVQMTAKEKTRAVRELTATVLSRPPKMCNFIEWQDKKVIYKRYASLFFVACVDKNDNELIVLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQETSKVEVLRICAAMDEMMDESKEE 165
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BLAST of mRNA_L-elsbetiae_contig5905.14378.1 vs. uniprot
Match: F0Y8T1_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8T1_AURAN)

HSP 1 Score: 242 bits (617), Expect = 3.440e-78
Identity = 128/176 (72.73%), Postives = 142/176 (80.68%), Query Frame = 2 
Query:  122 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWR-DKKIVYKRYASLFFVAC--------------------IDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAANGNQG 586
            MINFMLL+SRQGKTRLTKWY++YS KEKAR VRE  +TVLARAPKMCNF+EWR DKKIVYKRYASLFF+ C                    +D +DNELITLE IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFI GEL+ESSKKEVL +C+QMDE+M+E+KEE  NG  G
Sbjct:    1 MINFMLLVSRQGKTRLTKWYESYSTKEKARIVRE--ATVLARAPKMCNFIEWRADKKIVYKRYASLFFICCGDRRRERAPRRRKLKFLPAGVDSEDNELITLEMIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIAGELEESSKKEVLSICAQMDEMMDESKEEG-NGKGG 173
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BLAST of mRNA_L-elsbetiae_contig5905.14378.1 vs. uniprot
Match: A0A812YG65_SYMMI (AP complex subunit sigma (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YG65_SYMMI)

HSP 1 Score: 240 bits (613), Expect = 9.970e-78
Identity = 112/147 (76.19%), Postives = 135/147 (91.84%), Query Frame = 2 
Query:  125 INFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEE 565
            INF+LL+SRQGKTRLTKW+     K+K R+VRE+T  VL+R PK+CNF+EWRDKK+VYKRYASL+F+AC+D++DNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYI+DELFIGG LQE+SK EVLR+C+ MDE+M+E+K+E
Sbjct:    1 INFILLVSRQGKTRLTKWFVQKEPKDKTRSVRELTGMVLSRPPKLCNFLEWRDKKVVYKRYASLYFIACVDKEDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYIMDELFIGGYLQETSKAEVLRICAAMDEMMDESKDE 147
[Close]
BLAST of mRNA_L-elsbetiae_contig5905.14378.1 vs. uniprot
Match: A0A024THD2_9STRA (AP complex subunit sigma n=12 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024THD2_9STRA)

HSP 1 Score: 233 bits (594), Expect = 6.080e-75
Identity = 111/148 (75.00%), Postives = 130/148 (87.84%), Query Frame = 2 
Query:  122 MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEE 565
            MI+FMLL+SRQGKTRL+KWY T   K+KAR +RE+T+ VL R  K CNF+EW+D+KIVYKRYASL+FVACI +++NELITLE IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDEL IGG LQE SKKE+LRVC Q ++ MEE+KE+
Sbjct:    1 MIDFMLLVSRQGKTRLSKWYSTVPLKDKARIIREVTTLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEVIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCQQQEDFMEESKED 148
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5905.14378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBL7_ECTSI4.930e-10598.13AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S4A8C4_9STRA2.230e-8781.25AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
A0A835Z7C9_9STRA2.890e-8682.12AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2SD76_9STRA1.190e-8577.78AP complex subunit sigma n=1 Tax=Rhizochromulina m... [more]
A0A7S2XUT6_9STRA4.310e-8482.12AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]
W7T3W8_9STRA1.030e-8381.76AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A7S3LZF2_9STRA7.250e-8178.52AP complex subunit sigma n=1 Tax=Spumella elongata... [more]
F0Y8T1_AURAN3.440e-7872.73AP complex subunit sigma n=1 Tax=Aureococcus anoph... [more]
A0A812YG65_SYMMI9.970e-7876.19AP complex subunit sigma (Fragment) n=1 Tax=Symbio... [more]
A0A024THD2_9STRA6.080e-7575.00AP complex subunit sigma n=12 Tax=Saprolegniaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5905contigL-elsbetiae_contig5905:5659..9288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue1.2e-82
Seed eggNOG ortholog2880.D8LBL7
Preferred nameAP1S2
KEGG koko:K12394,ko:K12395
KEGG Pathwayko04142,map04142
Hectar predicted targeting categorymitochondrion
GOsGO:0000139,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0005886,GO:0005905,GO:0006605,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006897,GO:0006898,GO:0006928,GO:0006935,GO:0007034,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008104,GO:0008150,GO:0008306,GO:0008542,GO:0008565,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0012505,GO:0012506,GO:0012510,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019882,GO:0019884,GO:0019886,GO:0022008,GO:0030030,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030154,GO:0030182,GO:0030276,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031175,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033267,GO:0034613,GO:0036465,GO:0040011,GO:0042051,GO:0042147,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042886,GO:0042995,GO:0043005,GO:0043195,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043679,GO:0044306,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045176,GO:0045184,GO:0045202,GO:0045334,GO:0045444,GO:0046530,GO:0046907,GO:0048002,GO:0048193,GO:0048468,GO:0048475,GO:0048513,GO:0048592,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050690,GO:0050877,GO:0050885,GO:0050890,GO:0050896,GO:0050905,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060612,GO:0061448,GO:0061564,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090596,GO:0097458,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099504,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0150034
EggNOG free text desc.protein transport
EggNOG OGsCOG5030@1,KOG0934@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Ec32 ortholog descriptionClathrin assembly complex, small subunit
Ec32 orthologEc-27_003490.1
Exons5
Model size725
Cds size483
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.7911017-UTR-L-elsbetiae_contig5905:5658..57791622816638.7911017-UTR-L-elsbetiae_contig5905:5658..5779Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5905 5659..5779 -
1691683704.005422-UTR-L-elsbetiae_contig5905:5658..57791691683704.005422-UTR-L-elsbetiae_contig5905:5658..5779Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5905 5659..5779 -
1622816638.865351-UTR-L-elsbetiae_contig5905:9167..92881622816638.865351-UTR-L-elsbetiae_contig5905:9167..9288Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5905 9168..9288 -
1691683704.0791726-UTR-L-elsbetiae_contig5905:9167..92881691683704.0791726-UTR-L-elsbetiae_contig5905:9167..9288Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5905 9168..9288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.8038862-CDS-L-elsbetiae_contig5905:5779..58901622816638.8038862-CDS-L-elsbetiae_contig5905:5779..5890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5905 5780..5890 -
1691683704.020947-CDS-L-elsbetiae_contig5905:5779..58901691683704.020947-CDS-L-elsbetiae_contig5905:5779..5890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5905 5780..5890 -
1622816638.8151457-CDS-L-elsbetiae_contig5905:6737..69271622816638.8151457-CDS-L-elsbetiae_contig5905:6737..6927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5905 6738..6927 -
1691683704.0325572-CDS-L-elsbetiae_contig5905:6737..69271691683704.0325572-CDS-L-elsbetiae_contig5905:6737..6927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5905 6738..6927 -
1622816638.827381-CDS-L-elsbetiae_contig5905:7806..79101622816638.827381-CDS-L-elsbetiae_contig5905:7806..7910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5905 7807..7910 -
1691683704.0431378-CDS-L-elsbetiae_contig5905:7806..79101691683704.0431378-CDS-L-elsbetiae_contig5905:7806..7910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5905 7807..7910 -
1622816638.8391423-CDS-L-elsbetiae_contig5905:8176..82511622816638.8391423-CDS-L-elsbetiae_contig5905:8176..8251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5905 8177..8251 -
1691683704.0568042-CDS-L-elsbetiae_contig5905:8176..82511691683704.0568042-CDS-L-elsbetiae_contig5905:8176..8251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5905 8177..8251 -
1622816638.8532395-CDS-L-elsbetiae_contig5905:9164..91671622816638.8532395-CDS-L-elsbetiae_contig5905:9164..9167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5905 9165..9167 -
1691683704.0700243-CDS-L-elsbetiae_contig5905:9164..91671691683704.0700243-CDS-L-elsbetiae_contig5905:9164..9167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5905 9165..9167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5905.14378.1prot_L-elsbetiae_contig5905.14378.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5905 5780..9167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5905.14378.1

>prot_L-elsbetiae_contig5905.14378.1 ID=prot_L-elsbetiae_contig5905.14378.1|Name=mRNA_L-elsbetiae_contig5905.14378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MINFMLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFV
EWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCE
LDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAA
NGNQGPSRRR*
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mRNA from alignment at L-elsbetiae_contig5905:5659..9288-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5905.14378.1 ID=mRNA_L-elsbetiae_contig5905.14378.1|Name=mRNA_L-elsbetiae_contig5905.14378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3630bp|location=Sequence derived from alignment at L-elsbetiae_contig5905:5659..9288- (Laminarionema elsbetiae ELsaHSoW15)
GAAGAACGACGGGATCTTGTGGGTCAGAAATCGGTTTCTGTTGTGTTTGC
GACTCACGACAGAGGTCGGGAGAGGGCTATTCCGCCGCGTGTGAAGTGCC
AGAGACAGAACAGCTTCCACGATGGTGAGTGTGGCTCCTTGGTATGTTCA
TGGTCGAGTGTTTCGGAATAAACCATGCTTGTTGTGATGGAAGAAGTTTC
AGAGCATACATAGATAGGTTCGGAAGCTTCATATTTTGCAAACAGAAATC
GTGGAACGTATGTACTATTTAGCTACTGTTATAAGTTCCTCGCAGTAGAC
TACTTTGTACTATGCAGCAGTCTCCAACGTATCTACACAACCATCATACG
CGAAACAGGCTGTGCGTTCGGGCTTTGGGGAGGCTGCCAGGGATAATGGT
GCTGTGCTCCACAGTTCCACGGGGTATGCGTAGGCCGGGTCCTATTGTAG
AGCCCGTCAGATGTACATAGCTGCGAACGCCTTCTAAAGTTGCTCCGAAC
TATGTACATACATAGATACCCCCAAGGAACTTTGGACTAGAGAGAGCTAA
TGTGAGAAACAACAACAGCCAACTGTAGAGTAAGATAGACTCGACTACAT
TACATACATACATACATACATGCATACCGCCATCTTTGGAGATCGGCATC
GATGCGGTGCTCCAATCGCTCTTTGGGGTGCAAGACATGTTGAGGCAAAG
GCTGCTGATACGTCGAACATGTAGATTGGCCCCAAAATGAGTGGGAGCAA
ACAAACGCGCGTTGGCTTTTGTGCAGCTCCCGCGCGATGCGACTGCTTTT
TTGCGCAGTCCCATTTTTTTTCTTCTTCTTGTTTCTTCCCATTATTGGCA
TATTCGCCGTCTGCCCCACTGGCCCCCATACTCCACTACGACTAGCTAGA
TATTACATGTATATCCACGGCTGGTGCTATTAGTCGGACCGTCTTCGCCA
AGTGTTTGCTTCTACGACGCCACGTGCGGACCCAAATCCCCCAAAACACT
CCAACAAGCTTTTTGTTTCACTTGCTTGAATTTTCAGATCAACTTTATGC
TGCTCATCAGCCGACAAGGGAAGACGCGCCTAACCAAGTGGTATCAGACC
TACTCCGCCAAGGTGAGACGGGACAACATATTGTAGGGAGGAAAGAGAGA
GAGAGAGAGGAAAAATAGAGAGACGCACACACACAGACACACAGAAAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAAGTAGA
GAGAGACGCACAGAGAGAGAGAGAGAGAGCGAGAGAGAATGCCGGCACGC
CGCTGTCCTCGTCCTGCCATGGTGCCAGCCCGTGCTTACTTCGCCCTCCC
CTCTGGCACCCGCCCTGCCGGTTTGCAGGAGAAAGCGCGTACGGTGCGGG
AGATCACGTCGACGGTCCTGGCGCGGGCGCCCAAGATGTGCAACTTCGTG
GAGTGGAGGGATAAGAAGATCGTTTACAAAAGGTGGGGGGCAAGGGACAA
GCGGCTCAGCACGAGAACTATGGTTGGGGGGAGCGGAGGCACAACCAGTG
CAAAACAGTACAGGAGGCGCAAGAAATAAAGGGGAAGGCGGGGGGGGGGG
GGGGGGGGCAGAGGGCTAGAAAAACCGGGCTTGTACTGGCCACCCTGGGC
GCCAGGAAGGGCACCACTCCCGATTCTCTCCGTTTNNNNNNNNNNAGGAA
CGAAGAAGACGGGGGGGGGGGGGGGGGGGGAGGGGGAGAAAAAAAAAGAA
AAGAAGAGGGTGGAGGGGAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGCAGTGCTGTAGAAAAAGCGGGCTTGTACTGATCTCCCT
GTGCCGAAGGAAGGTCCACTCTGCCTCTTCTCTGCCTTTTGTAGTTTTTG
TCAAATGCCCCCCCCCCCTTTCCCCGAAGCCTATGGAAAGGCAGAGGATG
CTTGCATCCATTTGCGTTTGTCAGGGGTTTGTGTGTTGGCTGGGAGGGGC
TCAGTGGATGGAACGTGAGTATGTCTACCACCGCAATCCCGTGTGTTGCC
TCTTTCCCCACGTTTTCTGTTTTTGTCTGTTGTCCGACACAGCTAGTACA
ATAGTAGCGCGCGTACATGGTTCGCTGCTTGCCCGCTGACTTGTCGCTGA
CTTGTCGCTGACTTCGTATGCAACACCGTCGTCGTCTCCTGCCGTACCTT
GCCCTGCCCCCCCACGCACCTTGCTTTTATGCTTCCTTCGTTCCATCCGG
GGGGGGGGGCTGCCTGCCTCTGCTGTGTTGTGCGCTTGGGCATGGGGGCA
CGCAAAAATCAACGACAACACCACCCACACCCCAACAACAACGGAAAACG
GGGGGGGAAAGGTATGCGTCCCTGTTTTTCGTGGCGTGCATAGACCAGGA
CGACAACGAGCTCATCACGCTCGAAAAGATCCACCTTTTCGTGGAGGTGC
TGGACCGGTACTTCGGGAACGTGTGCGAGCTGGACATCATCTTTAACTTC
CACAAGGCGTACTACATATTGGACGAGCTCTTCATCGGAGGCGAGCTTCA
GGTGGGTGGAAGGGGGCGCTGTGTTTTTTGTTCTGATGGAAATGGGGATT
GCCCCACACACACACACACACACACACACACCCCATGCTTTTGCATGGCT
ATCTCTTCTCTCCCCCTCTCTCCGTTTCCACGTCCTCGAGTGATGCTGCG
GTGTTGGGGGGGCATGCATCACGACTAGTGCCCACTCCGTATGTAGATAT
GCTGTTCTTATTCGAGTCTACGCAGCAGCCAGATGTAACACCAGGTAAAA
CGACTAGCTAACTTCGTGAAACAAGATAACTCCTAAGGTTTTTAAGTGTG
TCAACCGGCTTCATCTGAACCCTTGCTGCTTGCTGGCTTACGTCGCCATT
CTCGGCAGCCTGTTCTCTGTTCAGTGTGAACATTTTGCTTGGTGTGTCTC
CAGGAATTGTCGATTTAGAATGTTTTTTTGTGCAACTGGGCGACTTGATT
TCGAAGGTCCATCCCCTTTTCAAGCTTGTTCCTGAAACAGCGTATCCACT
GCCACCAACTCTTTTTGTGCTCATGTTCCTCCCATGAACAGTAATAAGAA
GTGAGAAGTCATTCGAATCCCCCCCCCATGTAGACACAAGCACCGATCCC
AAGTCGATTCCTGTCAATCGTTGCTCGTGTGTGTTCCCTGCTGCTCTGTC
CCTATTAGGCAGAACGAACCCTATCCCCGCCCAAAGGGGATACAGTGTTG
TGTGCTGCTTGTGGTTAGGCATCCACGAGGCAGTCACGTCAATGCTTTCT
ATGTTTATTCTGTAACGCACGGTGCCAGGGTCAACTCCCCCCCCCCCCGG
ACCTTACTCGCCTTGTCCCACGTGGCCCCTTCTCGCCCCCGCCCTCAGGA
AAGTTCCAAGAAGGAGGTATTGCGAGTATGCTCGCAGATGGATGAGCTCA
TGGAGGAGGCCAAGGAGGAGGCCGCCAATGGCAACCAGGGGCCCTCGCGT
CGGCGGTGACCTGCCTAGCTGTGCCTGCAGCCTCACGCCGGCGTCAACTG
TCGGAGAAAAGGGCGCGGGAGAGCGGCGGCACTTCGTCGTTGTGTATACC
CCGTAAACGTCGAAACTCATTAAGTTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5905:5659..9288-

>mRNA_L-elsbetiae_contig5905.14378.1 ID=mRNA_L-elsbetiae_contig5905.14378.1|Name=mRNA_L-elsbetiae_contig5905.14378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig5905:5659..9288- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGATCAACTTTATGCTGCTCATCAGCCGACAAGGGAAGACGCGCCT
AACCAAGTGGTATCAGACCTACTCCGCCAAGATCAACTTTATGCTGCTCA
TCAGCCGACAAGGGAAGACGCGCCTAACCAAGTGGTATCAGACCTACTCC
GCCAAGGAGAAAGCGCGTACGGTGCGGGAGATCACGTCGACGGTCCTGGC
GCGGGCGCCCAAGATGTGCAACTTCGTGGAGTGGAGGGATAAGAAGATCG
TTTACAAAAGGAGAAAGCGCGTACGGTGCGGGAGATCACGTCGACGGTCC
TGGCGCGGGCGCCCAAGATGTGCAACTTCGTGGAGTGGAGGGATAAGAAG
ATCGTTTACAAAAGGTATGCGTCCCTGTTTTTCGTGGCGTGCATAGACCA
GGACGACAACGAGCTCATCACGCTCGAAAAGATCCACCTTTTCGTGGAGG
TGCTGGACCGGTACTTCGGGAACGTGTGCGAGCTGGACATCATCTTTAAC
TTCCACAAGGCGTACTACATATTGGACGAGCTCTTCATCGGAGGCGAGCT
TCAGGTATGCGTCCCTGTTTTTCGTGGCGTGCATAGACCAGGACGACAAC
GAGCTCATCACGCTCGAAAAGATCCACCTTTTCGTGGAGGTGCTGGACCG
GTACTTCGGGAACGTGTGCGAGCTGGACATCATCTTTAACTTCCACAAGG
CGTACTACATATTGGACGAGCTCTTCATCGGAGGCGAGCTTCAGGAAAGT
TCCAAGAAGGAGGTATTGCGAGTATGCTCGCAGATGGATGAGCTCATGGA
GGAGGCCAAGGAGGAGGCCGCCAATGGCAACCAGGGGCCCTCGCGTCGGC
GGTGAGAAAGTTCCAAGAAGGAGGTATTGCGAGTATGCTCGCAGATGGAT
GAGCTCATGGAGGAGGCCAAGGAGGAGGCCGCCAATGGCAACCAGGGGCC
CTCGCGTCGGCGGTGA
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