|
Homology
BLAST of mRNA_L-elsbetiae_contig590.14369.1 vs. uniprot
Match: D7FNQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ8_ECTSI) HSP 1 Score: 521 bits (1341), Expect = 2.260e-178 Identity = 322/540 (59.63%), Postives = 360/540 (66.67%), Query Frame = 1
Query: 1 MDGAIAVERGQLASLLLVMFVAAGAPALLAFILKVFFSIRLRSRLLHDDRGRFVGVFFILATKVVSVPALCGGGRLCERRVHTLTTDDLDCDDXXXXXXXTNALEGATAR----KMNSGREEEEHKGGDQSPQQGVRGSGAGSSRPTTPLERKEESWCGGERERGRSANRKIEG-SKNRTELDLPPRHWMCTVCKKVNMLPENWTGRAGKVIQVVIKRKEVDKQAMYGAFKTRPGVPLCGKCHTPFNYSWRSGGDSDQTPQQQRQRQLLEAALSRPATAASSAPSAAPGTD----ADVGKDEDQGTGGLSFAGF-LGVLTKAVGFMHALVSRSRRRRD-KNKLIDAGGGAEAGDAAVEPELWYGREFRRQLTTYFKPELERPSLSSPLAQGGGRMGGGGRYPVGARVACFAGKEAWYPGAVVASRENNTYDVRFDNGDIAQHVFPHMIRFEPIHTDSHLLCFYYGLALATAVAWPLAGFGYFYSSTTADATAI-----VALPALVAGVAGALAVAVQFCEIYAENKSAGLGVTAKFAAIF 1572
MDGAI VER LA+LLLVMF AA PA+LA +LK+FFS+RLRS L+ DDR RFVGVFF LATK VSVPA CGGGRLCERRVH L D D XXXXXXX E A R K G +EE GD Q+ G +G SANR +G ++ RTELDLPPRHWMCTVCKKVNMLP+ W GRAGK + VVIKRK VD +AMYG FKT+PGVPLC KC TPFNYSWR+GG SD QQRQ++LL+AALSRP AAS+A +A TD A V D GG++ A VL KA F+ AL S RRRR +K D GG+ DA EPELWYGREFRRQL TYFKPEL RP+ GG RYPVGARVACFAGK+AWYPGAV ASREN+TYDVR+DNGDIAQHVF HMIRFEP+H DS L C YYGLALA A AWPLAG YF S++ A VALPALV G AG LAVA QF EIYA+N+S GL V KFAA++
Sbjct: 1 MDGAIPVERTHLAALLLVMFAAAAVPAVLAAVLKMFFSVRLRSSLVRDDRRRFVGVFFFLATKAVSVPAFCGGGRLCERRVHALKDDATSTDXXXXXXXXXRDNEAALERGGGGKTIGGDAQEE---GDL--QRAPLGGSSGRRXXXXXXXXXXXXXXXXXXXXXXSANRLADGGTRKRTELDLPPRHWMCTVCKKVNMLPDEWNGRAGKDVHVVIKRKAVDTRAMYGLFKTKPGVPLCSKCRTPFNYSWRNGGGSDNL-MQQRQQRLLDAALSRPTNAASTAVAAGSATDPALSAAVDGPMDAENGGVAAAAVHRRVLAKAARFIRALCSPCRRRRAASSKPFDGRGGS---DAVEEPELWYGREFRRQLMTYFKPELSRPAA------------GGERYPVGARVACFAGKDAWYPGAVAASRENDTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTSAAXXXXXXXXXXVALPALVVGTAGTLAVAFQFWEIYADNRSTGLCVATKFAAVW 519
BLAST of mRNA_L-elsbetiae_contig590.14369.1 vs. uniprot
Match: A0A6H5L3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X8_9PHAE) HSP 1 Score: 381 bits (978), Expect = 2.140e-123 Identity = 213/342 (62.28%), Postives = 241/342 (70.47%), Query Frame = 1
Query: 580 MLPENWTGRAGKVIQVVIKRKEVDKQAMYGAFKTRPGVPLCGKCHTPFNYSWRSGGDSDQTPQQQRQRQLLEAALSRPATAASSAPSAAPGTDADVGKDED----QGTGGLSFAGF-LGVLTKAVGFMHALVSRSRRRRD-KNKLIDAGGGAEAGDAAVEPELWYGREFRRQLTTYFKPELERPSLSSPLAQGGGRMGGGGRYPVGARVACFAGKEAWYPGAVVASRENNTYDVRFDNGDIAQHVFPHMIRFEPIHTDSHLLCFYYGLALATAVAWPLAGFGYFYSSTTA-----DATAIVALPALVAGVAGALAVAVQFCEIYAENKSAGLGVTAKFAAIF 1572
MLP+ W GR GK + VVIKRK VD +AMYG FKT+PGVPLC KCHTPFNYSWR+GG SD+ QQRQ++LL+AALSRP +AAS+A +A TD + D GG++ A VL KA F+ + S+ RRRR +K D GGA DA EPELWYGREFRRQL TYFKPEL RP+ S GGRYPVGARVACFAGK+AWYPGAV ASRENNTYDVR+DNGDIAQHVF HMIRFEP+H DS L C YYGLALA A AWPLAG YF S++ A A A+VALPALV G AG LAVA Q EIYA+N+S GL V KFA IF
Sbjct: 1 MLPDEWDGRTGKDVHVVIKRKAVDTRAMYGLFKTKPGVPLCSKCHTPFNYSWRNGGGSDKL-MQQRQQRLLDAALSRPTSAASTAVAAGSATDPALSAAADGLMNAENGGVAAAAVHRRVLAKAARFIRGIYSQCRRRRAASSKTFDGRGGA---DAVEEPELWYGREFRRQLMTYFKPELSRPAAS------------GGRYPVGARVACFAGKDAWYPGAVAASRENNTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTSAATDAATSAAALVALPALVVGTAGTLAVAFQIWEIYADNRSTGLCVATKFAVIF 326
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-01_004610.1 |
Exons | 3 |
Model size | 1572 |
Cds size | 1572 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816637.8977387-CDS-L-elsbetiae_contig590:16105..16267 | 1622816637.8977387-CDS-L-elsbetiae_contig590:16105..16267 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig590 16106..16267 + |
1691683703.3082936-CDS-L-elsbetiae_contig590:16105..16267 | 1691683703.3082936-CDS-L-elsbetiae_contig590:16105..16267 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig590 16106..16267 + |
1622816637.9113972-CDS-L-elsbetiae_contig590:16677..17088 | 1622816637.9113972-CDS-L-elsbetiae_contig590:16677..17088 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig590 16678..17088 + |
1691683703.3208218-CDS-L-elsbetiae_contig590:16677..17088 | 1691683703.3208218-CDS-L-elsbetiae_contig590:16677..17088 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig590 16678..17088 + |
1622816637.9237766-CDS-L-elsbetiae_contig590:17681..18680 | 1622816637.9237766-CDS-L-elsbetiae_contig590:17681..18680 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig590 17682..18680 + |
1691683703.3385959-CDS-L-elsbetiae_contig590:17681..18680 | 1691683703.3385959-CDS-L-elsbetiae_contig590:17681..18680 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig590 17682..18680 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig590.14369.1 >prot_L-elsbetiae_contig590.14369.1 ID=prot_L-elsbetiae_contig590.14369.1|Name=mRNA_L-elsbetiae_contig590.14369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=524bp
MDGAIAVERGQLASLLLVMFVAAGAPALLAFILKVFFSIRLRSRLLHDDR GRFVGVFFILATKVVSVPALCGGGRLCERRVHTLTTDDLDCDDNLDCGDN TNALEGATARKMNSGREEEEHKGGDQSPQQGVRGSGAGSSRPTTPLERKE ESWCGGERERGRSANRKIEGSKNRTELDLPPRHWMCTVCKKVNMLPENWT GRAGKVIQVVIKRKEVDKQAMYGAFKTRPGVPLCGKCHTPFNYSWRSGGD SDQTPQQQRQRQLLEAALSRPATAASSAPSAAPGTDADVGKDEDQGTGGL SFAGFLGVLTKAVGFMHALVSRSRRRRDKNKLIDAGGGAEAGDAAVEPEL WYGREFRRQLTTYFKPELERPSLSSPLAQGGGRMGGGGRYPVGARVACFA GKEAWYPGAVVASRENNTYDVRFDNGDIAQHVFPHMIRFEPIHTDSHLLC FYYGLALATAVAWPLAGFGYFYSSTTADATAIVALPALVAGVAGALAVAV QFCEIYAENKSAGLGVTAKFAAIF back to topmRNA from alignment at L-elsbetiae_contig590:16106..18680+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig590.14369.1 ID=mRNA_L-elsbetiae_contig590.14369.1|Name=mRNA_L-elsbetiae_contig590.14369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2575bp|location=Sequence derived from alignment at L-elsbetiae_contig590:16106..18680+ (Laminarionema elsbetiae ELsaHSoW15) ATGGACGGCGCGATCGCTGTGGAGCGTGGGCAGCTGGCTTCACTATTGCT
GGTCATGTTTGTGGCGGCAGGCGCGCCCGCGTTGTTGGCGTTTATCCTTA
AGGTGTTTTTCTCGATCAGGCTTCGATCGCGTCTCCTCCATGACGACCGA
GGACGCTTTGTGGTGAGAAAGGAGAAAGAGCATCTAGCAGCTAACCCATT
TGAATGTTAAAGCTCCCGCAACTGGCATCATCCCTGGTTGCTTTTTCGAG
TGGATTGTTTTTCGCCGAGATACGGTGATAGTCTCATTTTTATGGTCGGG
TGAAATGTCATATGAACAATAGTTATGGAGACTCCTACCATCGTCTCCAA
AGGTCTCACCACTAACAAATGATATGTATCGTTGTCTCGGGACTTCTCGG
TCTCACATGCAGGCTTCTTTGACCCCTTACACGAGACCAATCCACGTCAT
GGATGGCTTCGAAGACTCGATACCAAACTCCAAAACAGGAGCACGTTTTT
CAAGACCGATGACAACCGAGCGACAGCCAAACTGACCCCCGTTCTACCAT
TCCGTCCATCTCCTACACACAGGGCGTTTTCTTTATCCTGGCGACCAAGG
TTGTATCGGTTCCTGCCTTGTGCGGCGGCGGACGGCTGTGCGAGCGCCGA
GTCCACACCCTCACCACCGACGATCTCGACTGCGATGACAATCTTGACTG
CGGTGACAATACTAACGCACTCGAGGGGGCAACAGCCCGAAAAATGAACA
GCGGCCGCGAAGAAGAGGAACACAAAGGAGGAGACCAAAGCCCGCAGCAA
GGGGTTAGGGGCAGTGGGGCTGGAAGCAGTCGCCCAACGACACCACTTGA
GAGGAAGGAAGAGAGTTGGTGTGGTGGGGAGAGGGAGCGGGGTCGAAGCG
CTAACAGAAAGATTGAAGGCTCGAAGAACAGAACGGAGCTCGACCTGCCG
CCAAGGCATTGGATGTGCACCGTGTGTAAGAAGGTTCGACGTTGTTCTGT
TTTGCCTGCCTGCCTAACTTTCGTTTTCCAAGTTATTTGAACTCACTTGT
ATTCGCTCTTCTCTGTCTCTGTCTCTGGCTCTGTCTGTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCGAGTGCGATTCGAAACGAGGACGCC
TTGCATACTCCCATCACAAAACTACACGACGACGGGTTCAGTAGACGAAA
CGGCGGTGTTCGGCTATGTAGGGTCATGAAGGAGGTTGATAGTAGGACTA
GCTGGGAACGTTTGAAATGTATATGAGCTGCTCTCTTGTTCTGGAACTGG
ACCACACCCTTTTCGGCCTTTGCTGTTTCGTCTTACCTCGATATATACAT
TCATCCCCGTCACATCGAAACAATCAAGAGTACAGCCAAATCAAACAGCC
ACCGGGCATACGCATCGTCGTATTGGCGGAAGGTAGCTTATCCGCCGCGC
GGCTTGACAAGCAAAGTCAACGAAAAAGCGGCGAACTCCGTCCGTTACAA
CTGAGCATCTAGAATCAGCCACATCTTGCCGTGCACGTTATCGCTCCCCG
CGCGCGTGCCTCTCTCGGTACACAAGGTGAACATGCTGCCGGAAAACTGG
ACTGGCCGAGCCGGGAAGGTCATTCAGGTCGTAATAAAGCGAAAAGAGGT
GGACAAACAAGCCATGTACGGGGCCTTCAAAACGAGGCCGGGAGTGCCGC
TGTGTGGCAAGTGTCATACGCCCTTCAACTACTCTTGGAGAAGCGGGGGC
GATTCGGACCAGACACCACAGCAGCAACGGCAACGACAACTTCTGGAGGC
GGCTCTCTCCCGCCCCGCGACCGCGGCAAGCTCGGCGCCGTCCGCAGCGC
CCGGGACCGACGCGGACGTAGGCAAAGATGAAGACCAGGGCACCGGAGGC
TTGTCTTTCGCCGGCTTTCTTGGGGTGTTGACAAAAGCTGTAGGGTTCAT
GCACGCTCTCGTTTCCCGAAGCCGCCGAAGACGCGACAAGAACAAGCTCA
TAGATGCGGGCGGCGGTGCTGAGGCCGGCGACGCAGCAGTCGAGCCGGAG
CTCTGGTACGGGAGAGAGTTCCGGCGCCAGCTCACAACCTACTTCAAGCC
GGAGCTCGAACGGCCTTCGCTGTCGTCGCCTCTGGCCCAGGGGGGAGGAC
GAATGGGCGGCGGTGGGCGCTATCCGGTCGGGGCCAGAGTGGCGTGCTTC
GCGGGGAAGGAGGCATGGTACCCGGGGGCTGTGGTAGCCTCTCGCGAGAA
CAATACCTACGACGTGCGCTTCGACAACGGGGACATCGCCCAGCACGTAT
TTCCGCACATGATTCGCTTCGAGCCGATCCACACGGACTCACACCTCCTT
TGCTTTTACTACGGCCTCGCTCTCGCCACCGCAGTGGCGTGGCCACTCGC
AGGCTTCGGATATTTCTATTCCAGTACCACGGCCGATGCCACCGCCATCG
TGGCTTTACCCGCGCTGGTTGCGGGCGTGGCCGGCGCCCTTGCAGTGGCG
GTCCAGTTCTGCGAAATCTACGCGGAAAACAAAAGCGCGGGGCTCGGCGT
CACAGCAAAGTTTGCGGCGATTTTT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig590:16106..18680+ >mRNA_L-elsbetiae_contig590.14369.1 ID=mRNA_L-elsbetiae_contig590.14369.1|Name=mRNA_L-elsbetiae_contig590.14369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3144bp|location=Sequence derived from alignment at L-elsbetiae_contig590:16106..18680+ (Laminarionema elsbetiae ELsaHSoW15) ATGGACGGCGCGATCGCTGTGGAGCGTGGGCAGCTGGCTTCACTATTGCT GGTCATGTTTGTGGCGGCAGGCGCGCCCGCGTTGTTGGCGTTTATCCTTA AGGTGTTTTTCTCGATCAGGCTTCGATCGCGTCTCCTCCATGACGACCGA GGACGCTTTGTGATGGACGGCGCGATCGCTGTGGAGCGTGGGCAGCTGGC TTCACTATTGCTGGTCATGTTTGTGGCGGCAGGCGCGCCCGCGTTGTTGG CGTTTATCCTTAAGGTGTTTTTCTCGATCAGGCTTCGATCGCGTCTCCTC CATGACGACCGAGGACGCTTTGTGGGCGTTTTCTTTATCCTGGCGACCAA GGTTGTATCGGTTCCTGCCTTGTGCGGCGGCGGACGGCTGTGCGAGCGCC GAGTCCACACCCTCACCACCGACGATCTCGACTGCGATGACAATCTTGAC TGCGGTGACAATACTAACGCACTCGAGGGGGCAACAGCCCGAAAAATGAA CAGCGGCCGCGAAGAAGAGGAACACAAAGGAGGAGACCAAAGCCCGCAGC AAGGGGTTAGGGGCAGTGGGGCTGGAAGCAGTCGCCCAACGACACCACTT GAGAGGAAGGAAGAGAGTTGGTGTGGTGGGGAGAGGGAGCGGGGTCGAAG CGCTAACAGAAAGATTGAAGGCTCGAAGAACAGAACGGAGCTCGACCTGC CGCCAAGGCATTGGATGTGCACCGTGTGTAAGAAGGGCGTTTTCTTTATC CTGGCGACCAAGGTTGTATCGGTTCCTGCCTTGTGCGGCGGCGGACGGCT GTGCGAGCGCCGAGTCCACACCCTCACCACCGACGATCTCGACTGCGATG ACAATCTTGACTGCGGTGACAATACTAACGCACTCGAGGGGGCAACAGCC CGAAAAATGAACAGCGGCCGCGAAGAAGAGGAACACAAAGGAGGAGACCA AAGCCCGCAGCAAGGGGTTAGGGGCAGTGGGGCTGGAAGCAGTCGCCCAA CGACACCACTTGAGAGGAAGGAAGAGAGTTGGTGTGGTGGGGAGAGGGAG CGGGGTCGAAGCGCTAACAGAAAGATTGAAGGCTCGAAGAACAGAACGGA GCTCGACCTGCCGCCAAGGCATTGGATGTGCACCGTGTGTAAGAAGGTGA ACATGCTGCCGGAAAACTGGACTGGCCGAGCCGGGAAGGTCATTCAGGTC GTAATAAAGCGAAAAGAGGTGGACAAACAAGCCATGTACGGGGCCTTCAA AACGAGGCCGGGAGTGCCGCTGTGTGGCAAGTGTCATACGCCCTTCAACT ACTCTTGGAGAAGCGGGGGCGATTCGGACCAGACACCACAGCAGCAACGG CAACGACAACTTCTGGAGGCGGCTCTCTCCCGCCCCGCGACCGCGGCAAG CTCGGCGCCGTCCGCAGCGCCCGGGACCGACGCGGACGTAGGCAAAGATG AAGACCAGGGCACCGGAGGCTTGTCTTTCGCCGGCTTTCTTGGGGTGTTG ACAAAAGCTGTAGGGTTCATGCACGCTCTCGTTTCCCGAAGCCGCCGAAG ACGCGACAAGAACAAGCTCATAGATGCGGGCGGCGGTGCTGAGGCCGGCG ACGCAGCAGTCGAGCCGGAGCTCTGGTACGGGAGAGAGTTCCGGCGCCAG CTCACAACCTACTTCAAGCCGGAGCTCGAACGGCCTTCGCTGTCGTCGCC TCTGGCCCAGGGGGGAGGACGAATGGGCGGCGGTGGGCGCTATCCGGTCG GGGCCAGAGTGGCGTGCTTCGCGGGGAAGGAGGCATGGTACCCGGGGGCT GTGGTAGCCTCTCGCGAGAACAATACCTACGACGTGCGCTTCGACAACGG GGACATCGCCCAGCACGTATTTCCGCACATGATTCGCTTCGAGCCGATCC ACACGGACTCACACCTCCTTTGCTTTTACTACGGCCTCGCTCTCGCCACC GCAGTGGCGTGGCCACTCGCAGGCTTCGGATATTTCTATTCCAGTACCAC GGCCGATGCCACCGCCATCGTGGCTTTACCCGCGCTGGTTGCGGGCGTGG CCGGCGCCCTTGCAGTGGCGGTCCAGTTCTGCGAAATCTACGCGGAAAAC AAAAGCGCGGGGCTCGGCGTCACAGCAAAGTTTGCGGCGATTTTTGTGAA CATGCTGCCGGAAAACTGGACTGGCCGAGCCGGGAAGGTCATTCAGGTCG TAATAAAGCGAAAAGAGGTGGACAAACAAGCCATGTACGGGGCCTTCAAA ACGAGGCCGGGAGTGCCGCTGTGTGGCAAGTGTCATACGCCCTTCAACTA CTCTTGGAGAAGCGGGGGCGATTCGGACCAGACACCACAGCAGCAACGGC AACGACAACTTCTGGAGGCGGCTCTCTCCCGCCCCGCGACCGCGGCAAGC TCGGCGCCGTCCGCAGCGCCCGGGACCGACGCGGACGTAGGCAAAGATGA AGACCAGGGCACCGGAGGCTTGTCTTTCGCCGGCTTTCTTGGGGTGTTGA CAAAAGCTGTAGGGTTCATGCACGCTCTCGTTTCCCGAAGCCGCCGAAGA CGCGACAAGAACAAGCTCATAGATGCGGGCGGCGGTGCTGAGGCCGGCGA CGCAGCAGTCGAGCCGGAGCTCTGGTACGGGAGAGAGTTCCGGCGCCAGC TCACAACCTACTTCAAGCCGGAGCTCGAACGGCCTTCGCTGTCGTCGCCT CTGGCCCAGGGGGGAGGACGAATGGGCGGCGGTGGGCGCTATCCGGTCGG GGCCAGAGTGGCGTGCTTCGCGGGGAAGGAGGCATGGTACCCGGGGGCTG TGGTAGCCTCTCGCGAGAACAATACCTACGACGTGCGCTTCGACAACGGG GACATCGCCCAGCACGTATTTCCGCACATGATTCGCTTCGAGCCGATCCA CACGGACTCACACCTCCTTTGCTTTTACTACGGCCTCGCTCTCGCCACCG CAGTGGCGTGGCCACTCGCAGGCTTCGGATATTTCTATTCCAGTACCACG GCCGATGCCACCGCCATCGTGGCTTTACCCGCGCTGGTTGCGGGCGTGGC CGGCGCCCTTGCAGTGGCGGTCCAGTTCTGCGAAATCTACGCGGAAAACA AAAGCGCGGGGCTCGGCGTCACAGCAAAGTTTGCGGCGATTTTT back to top
|