mRNA_L-elsbetiae_contig590.14368.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig590.14368.1 vs. uniprot
Match: A0A6H5L2V4_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V4_9PHAE) HSP 1 Score: 420 bits (1079), Expect = 9.050e-129 Identity = 386/870 (44.37%), Postives = 435/870 (50.00%), Query Frame = 1 Query: 523 LDPSLKEDPWTEEEDKTVHDAQLRLGNRWADIAKFLTGRTDNAVKARWYATVHKINVQRPHMNASGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDPKPNVVPRETRIGVAYSTPVSHAGGGERFMSPVVAGLGVCRGIEPSSATAGATTSTTAPD-HGAPPVASATAT-GVDSTASPALVPTSSFTLGA-ASSTMGGGHRWQISASGKHGLANQSVIGSIMKAQAASQ---PTTYAELSRQVEANSGRIGGSSXXXXXXLVGDAGSRHPAMPAVGMTKEGLPHSYGFLGKDSSQELGTASSSSAPGYTGL-------DSRVTSAVATKSPPLPAPASSVGSRDGDQPAKDGGKRSRPRLFVNTNVDA-GMYIGVHDHPLQQHQHQXXRQ-----------------GLESINTXXXXXXXXXXXXXXXXXXXXXXXXXXMSYGCPPGMGSSAAEAASKXXXXAARYASGMAPLGNQSHIHHHQAQXXXXXXXXXXHXXXXXXXXXLMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHMQNIGGXXXXXXXXXXXXXXXEVXXXXXXXXXHHPIAIPGTSVRRYMHVQLLLALMSMPGLPVVAPAKVSWDRLGYFPVDAVFGPPKPGARPPGPPRLTPTSTAIPTMPGLSPHSHFGRDPTGGA-APSKRPRLGRGLAATGGGVAAAGS--------------------------------------------VHDTMPGVGGXXXXXXXXXXXXXAA--HTGAMAMPPPQHSPRTSAILSGLPVGEGAMMLGDAGELLPYASMSPTSFVGMGXXXXXXXXXPYQFP 2898 LDPS K PWTEEE +HDA LRLGNRWA+IAK LTGRTD+AVK WY T HK N+ R + GGG DDPKP+VVPRE I S PV H GGE + PVVAGLGVC GI P A A AT + A G PPV +ATA GV+S + PALVP+S+ TLG A + + +RWQ+S K G+ NQ+ IGS+ K +A Y EL ++V +G S+ GDAG+ H A + + + G KD S + AP + L ++ S TKSPPLPAPASSVGSRD DQ + G KR RPRLFVNTNVDA GMYIG H+ QQH XX G E+ + XXXXXXXXXXXXX + +GCPPG+GSSAAE XXXXXXXXXXXXX GG HPIAIPGTSVRRYMHVQLLLALMS PGL VV PA+VSWDRLGY+PVDAVFGPPKPGARPPGPPRLTPTSTAIPTMPGLSP S FG D A PSKR R G G GG ++G V +TMP +GG XXXXXXXXXXX HTGAMAMPPPQHSPRTSAILSGLPVGEG MMLGD GELLPYAS+SPTSF+G+G XXXXXXXXPYQFP Sbjct: 2 LDPSQKNAPWTEEEITIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHK-NIGRQNKEIRGGGGDGGSDPSRSRDAGARGSSTIDPIGPRGESVATNGGGPGFY---DDPKPDVVPREAVIAGGCSAPVGHVEGGECQLQPVVAGLGVCGGIGPPPAMAVATAAAVATHGQGMPPVGAATAAPGVESPSPPALVPSSASTLGTTAPAAVDENNRWQVSDDNKRGVVNQTAIGSLTKTEATDPRKAAACYGELDKKVAGENGDGSAST--------GDAGAVHGWHLATSAASDAVEEAPGHR-KDGSCGVVLGPGGVAPATSSLLEQASVVNAHAVSNTVTKSPPLPAPASSVGSRDRDQ--QIGSKRPRPRLFVNTNVDAAGMYIGGHEQ--QQHXXXXXXXXXXXXXXXXXXXXXXXXGFEA-DANAXXXXXXXXXXXXXARAPHAVSMSAVPFGCPPGLGSSAAE---------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXGGD--------------------------HPIAIPGTSVRRYMHVQLLLALMSAPGLRVVTPARVSWDRLGYYPVDAVFGPPKPGARPPGPPRLTPTSTAIPTMPGLSPRSQFGSDSAAAALVPSKRARSGTGPPVAEGGGDSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVCVRETMPAIGGRGXXXXXXXXXXXXXXXHTGAMAMPPPQHSPRTSAILSGLPVGEGMMMLGDTGELLPYASISPTSFIGIGGXXXXXXXXPYQFP 734
BLAST of mRNA_L-elsbetiae_contig590.14368.1 vs. uniprot
Match: D7FNQ9_ECTSI (Transcription factor C-MYB n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ9_ECTSI) HSP 1 Score: 290 bits (741), Expect = 6.500e-82 Identity = 224/538 (41.64%), Postives = 277/538 (51.49%), Query Frame = 1 Query: 1 MSTLGTLPLPALSLEGTVA---DESTPSAPLRSQVVGDGAMT-----APPAEAGARGSQQQQMLM---VGTGPHRQTQQAYGKMVAPAAXXXXXXXRYEEHRNEVDGDNKEDEDEXXXDEVGEDNHLGAHTPDNRPWSRKEDDAITRMVVERGIKRWSVIAGNLYAEVAGTLRTGKQCRARWRQTLDPSLKEDPWTEEEDKTVHDAQLRLGNRWADIAKFLTGRTDNAVKARWYATVHKINVQRPHMNASGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDPKPNVVPRETRIGVAYSTPVSHAGGGERFMSPVVAGLGVCRGIEPSSATAGATTSTTAPD-HGAPPVASATAT-GVDSTASPALVPTSSFTLGA-ASSTMGGGHRWQISASGKHGLANQSVIGSIMKAQAASQ---PTTYAELSRQVEANSGRIGGSSXXXXXXLVGDAGSRHPAMPAVGMTKEGLPHSYGFLGKDSSQELGTASSSSAPGYTGL-------DSRVTSAVATKSPPLPA 1542 MS T P+ A LE T+ DE+ + QVVGD A T A AG++G L+ T H Q QQ +GK P A R E + +G+ DE GED HLGA PD RPWSR ED+AI RMVVERGIKRWSVIAGNLY EVAGTLRTGKQC+ARW+ LDPS K PWTEEE+ +HDA LRLGNRW++IAK LTGRTD+AVK WY T HK N+ R +M GG DDPKP++VP E I S PV H GGE + PVVAGLGVC GI P A A AT + A G PPV +ATA GV+S++ PALVP+ + TLG A + G +RWQ+S K G+ +Q+ IGS+ K +A + Y EL ++V +G S+ GDAG+ H A T + + G +D S+ + AP + L ++ S TKSPPLPA Sbjct: 1 MSFPDTRPISAQGLEVTMKAAEDEARSTQRHHQQVVGDCASTXXXXGATAVHAGSQGXXXXXXLVGVDAKTNLHAQQQQTHGK--GPGAA------RDEGAEKDAEGNGDGDE------ACGEDTHLGARAPDLRPWSRMEDEAIARMVVERGIKRWSVIAGNLYVEVAGTLRTGKQCKARWQHMLDPSQKNAPWTEEEENIIHDAHLRLGNRWSEIAKLLTGRTDSAVKNYWYTTAHK-NIGRQNMEIRGGDGDGRSDPSRSGDTEATGSSNINPIGPGGESVATNGGASGFY---DDPKPDIVPGEAGIAGGCSAPVGHVEGGECQLQPVVAGLGVCGGIGPPPAMAVATAAAVATHGQGMPPVGAATAAPGVESSSPPALVPSLASTLGTTAPPAVDGNNRWQVSDDNKRGVVSQTAIGSLTKTEATNPRKAAACYGELDKKVAGENGDGSAST--------GDAGAVHGRHLATSATTGAVEEAPGHR-RDGSRGVVLGPGGVAPATSSLLEQASVVNAHAVSNTVTKSPPLPA 511
BLAST of mRNA_L-elsbetiae_contig590.14368.1 vs. uniprot
Match: A0A835ZPI2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPI2_9STRA) HSP 1 Score: 149 bits (376), Expect = 1.610e-38 Identity = 66/112 (58.93%), Postives = 89/112 (79.46%), Query Frame = 1 Query: 364 DNRPWSRKEDDAITRMVVERGIKRWSVIAGNLYAEVAGTLRTGKQCRARWRQTLDPSLKEDPWTEEEDKTVHDAQLRLGNRWADIAKFLTGRTDNAVKARWYATVHKINVQR 699 + R WS++EDDAI+ +V G+KRWS+IA NL EV G +R+GKQCR RW LDPSL+ DPWT+EE++ +++AQ RLGN+WA+IAK LTGRTDNA+K WY+T+ K N++R Sbjct: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRK-NMRR 111
BLAST of mRNA_L-elsbetiae_contig590.14368.1 vs. uniprot
Match: A0A835YS16_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS16_9STRA) HSP 1 Score: 148 bits (373), Expect = 3.510e-38 Identity = 62/107 (57.94%), Postives = 85/107 (79.44%), Query Frame = 1 Query: 364 DNRPWSRKEDDAITRMVVERGIKRWSVIAGNLYAEVAGTLRTGKQCRARWRQTLDPSLKEDPWTEEEDKTVHDAQLRLGNRWADIAKFLTGRTDNAVKARWYATVHK 684 + R W+R ED+AI R+V E G+KRWS++A +L E+ G +R+GKQCR RW LDPSL+++PWT EE++ ++DAQ RLGN+WA+IAK LTGRTDNA+K WY+T+ K Sbjct: 1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRK 107
BLAST of mRNA_L-elsbetiae_contig590.14368.1 vs. uniprot
Match: A0A7S2ST59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST59_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.740e-34 Identity = 64/113 (56.64%), Postives = 87/113 (76.99%), Query Frame = 1 Query: 361 PDNRPWSRKEDDAITRMVVERGIKRWSVIAGNLYAEVAGTLRTGKQCRARWRQTLDPSLKEDPWTEEEDKTVHDAQLRLGNRWADIAKFLTGRTDNAVKARWYATVHKINVQR 699 P+ R WSRKEDDAI R+V G KRW+VIA L E++G R+GKQCR RW LDP++K++PW+E E++ ++DAQ RLGN+WA+IAK L GRTDNA+K WY+T+ + N++R Sbjct: 37 PERRAWSRKEDDAIVRLVNRHGTKRWAVIAQELNGEISGVFRSGKQCRTRWLNHLDPAIKKEPWSEHEERIIYDAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRR-NMRR 148
BLAST of mRNA_L-elsbetiae_contig590.14368.1 vs. uniprot
Match: F0Y4P7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P7_AURAN) HSP 1 Score: 135 bits (341), Expect = 1.480e-33 Identity = 63/119 (52.94%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 343 HLGAHTPDN-----RPWSRKEDDAITRMVVERGIKRWSVIAGNLYAEVAGTLRTGKQCRARWRQTLDPSLKEDPWTEEEDKTVHDAQLRLGNRWADIAKFLTGRTDNAVKARWYATVHK 684 H G P R WSRKEDDAI R+V+ G KRW+VI+ L E+AG R+GKQCR RW LDP++K +PW+E E+ +++AQ RLGN+WA+IAK L GRTDNA+K WY+T+ + Sbjct: 13 HPGPGAPSGEASQRRAWSRKEDDAIVRLVMTHGTKRWAVISQELNKELAG-FRSGKQCRTRWLNHLDPAIKREPWSEGEESVIYEAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRR 130
BLAST of mRNA_L-elsbetiae_contig590.14368.1 vs. uniprot
Match: A0A3F2RS30_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RS30_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.860e-33 Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 1 Query: 346 LGAHTPDNRPWSRKEDDAITRMVVERGIKRWSVIAGNLYAEVAGTLRTGKQCRARWRQTLDPSLKEDPWTEEEDKTVHDAQLRLGNRWADIAKFLTGRTDNAVKARWYATVHK 684 G T + R W+RKEDDAI R+V E G KRWSVI+ +L E GT RTGKQCR RW LDP++K+DPWT EE++ + DAQ RLGN+WA+I+K L GRTDNA+K WY+++ + Sbjct: 21 AGGSTYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTTEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRR 133
BLAST of mRNA_L-elsbetiae_contig590.14368.1 vs. uniprot
Match: A0A484E484_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E484_BRELC) HSP 1 Score: 144 bits (364), Expect = 4.160e-33 Identity = 64/114 (56.14%), Postives = 86/114 (75.44%), Query Frame = 1 Query: 343 HLGAHTPDNRPWSRKEDDAITRMVVERGIKRWSVIAGNLYAEVAGTLRTGKQCRARWRQTLDPSLKEDPWTEEEDKTVHDAQLRLGNRWADIAKFLTGRTDNAVKARWYATVHK 684 ++ T + R W+RKEDDAI R+V E G KRWSVI+ +L +E GT RTGKQCR RW LDP++K+DPWT EE++ + DAQ RLGN+WA+I+K L GRTDNA+K WY+++ + Sbjct: 12 NVRGSTYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNSENHGTERTGKQCRTRWLNHLDPTIKKDPWTTEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRR 125
BLAST of mRNA_L-elsbetiae_contig590.14368.1 vs. uniprot
Match: H3HDP9_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3HDP9_PHYRM) HSP 1 Score: 144 bits (362), Expect = 4.760e-33 Identity = 64/109 (58.72%), Postives = 83/109 (76.15%), Query Frame = 1 Query: 358 TPDNRPWSRKEDDAITRMVVERGIKRWSVIAGNLYAEVAGTLRTGKQCRARWRQTLDPSLKEDPWTEEEDKTVHDAQLRLGNRWADIAKFLTGRTDNAVKARWYATVHK 684 T + R W+RKEDDAI R+V E G KRWSVI+ +L E GT RTGKQCR RW LDP++K+DPWT EE++ + DAQ RLGN+WA+I+K L GRTDNA+K WY+++ + Sbjct: 17 TYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQVIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRR 125
BLAST of mRNA_L-elsbetiae_contig590.14368.1 vs. uniprot
Match: A0A225WJ05_9STRA (Myb-like DNA-binding protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WJ05_9STRA) HSP 1 Score: 143 bits (361), Expect = 9.060e-33 Identity = 64/109 (58.72%), Postives = 83/109 (76.15%), Query Frame = 1 Query: 358 TPDNRPWSRKEDDAITRMVVERGIKRWSVIAGNLYAEVAGTLRTGKQCRARWRQTLDPSLKEDPWTEEEDKTVHDAQLRLGNRWADIAKFLTGRTDNAVKARWYATVHK 684 T + R W+RKEDDAI R+V E G KRWSVI+ +L E GT RTGKQCR RW LDP++K+DPWT EE++ + DAQ RLGN+WA+I+K L GRTDNA+K WY+++ + Sbjct: 13 TYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRR 121 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig590.14368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig590.14368.1 >prot_L-elsbetiae_contig590.14368.1 ID=prot_L-elsbetiae_contig590.14368.1|Name=mRNA_L-elsbetiae_contig590.14368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=992bp MSTLGTLPLPALSLEGTVADESTPSAPLRSQVVGDGAMTAPPAEAGARGSback to top mRNA from alignment at L-elsbetiae_contig590:6495..11132+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig590.14368.1 ID=mRNA_L-elsbetiae_contig590.14368.1|Name=mRNA_L-elsbetiae_contig590.14368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4638bp|location=Sequence derived from alignment at L-elsbetiae_contig590:6495..11132+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig590:6495..11132+ >mRNA_L-elsbetiae_contig590.14368.1 ID=mRNA_L-elsbetiae_contig590.14368.1|Name=mRNA_L-elsbetiae_contig590.14368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5952bp|location=Sequence derived from alignment at L-elsbetiae_contig590:6495..11132+ (Laminarionema elsbetiae ELsaHSoW15)back to top |