mRNA_L-elsbetiae_contig59.14366.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig59.14366.1 vs. uniprot
Match: D8LNR2_ECTSI (Zinc finger, C2H2 type family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR2_ECTSI) HSP 1 Score: 803 bits (2075), Expect = 5.970e-270 Identity = 641/1155 (55.50%), Postives = 705/1155 (61.04%), Query Frame = 1 Query: 1 MQHASGKDYDPSAWAKQRQERIKRALQASTRQKRQSGSPDKNHTFKPQLVGSTEGTTSKLPAGARVGDASAKQGAYDLTVLETLDGAFPPKRTTSDIYHDNRYDDQGGGVGSGRDKVPMEFGDTGDSLDRLAGSATD--RQRLSRTGSAGSHGSAAAPPALPSPTNGDRHASGNGYGHRRR-HSTAAGEEAEDGGPVRRGRDRQHDPDPGGRWTGPTREGGNGARNGAYDDDGYDYXXXPAAKHXXXXXXXXXN--RSGAA---EDALSHEVDRRPHVRGSISEEH---------DGHRHRRHVCSPGGAGGDGRTDRRGGGAGVVSKRPGRPTGGXXXRDEDGDDRSLEGPGDHDSDGT-RPEDADFLASLRGGEGXXXXXXXXXXGGXXGPGPLSSVGKQRARARHTRKPEWNSDTAAAASLGGPQGMVLTDNSPAAVQARLESSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAAWKHKHTKTLPWGEDG-AIGRGGG-GGSDTPDAGLQDGGFGDETADG---RLADEITGGGAREGYRLQQMMPSPSTGAMTSATNAKTTYTRGGGER--ADDGREGPPEAMAGGGRXXXXXRGRGVPAGKEQLRRNLSLLKKKMHSQAGSRRSQSAGPRAGDLFGGPNA-PSD-GGYPEPQPGGARQHLHMTTGTAPAMMSATPGAFLRDRETAERQLGRRGAGG-TRGRPPPEGPGSPYAVDPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQASGKALGPTGRASNRGAGARRRXXXQRSAMGAAGSPTPDAPGGRAAARGSRDRAXXXXXXXXXXSGVVGGRGADVTARSXXXXXXXXXXXXXXXXX--------PDRRRAWEGAHGS-------GDPGGGXXXXXXXXXXXXXXXX---------FAAELPPDAFPDAPVKLQDCKMCGRRFTSEALEKHSRACQKVFQAKRXXXNAAEMRIKGTELEKFAKTKGRAGGGGKRXXXXXXXXXEKARPRGFDDTPVRGAG--GEKASKWRQQSKQFRDALRQARVVTDAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHIQHCKNIKAKPSVLKKGSGSLLGHAARKSSSGASGRGKSQRW 3303 MQHASGKDYDPS WAKQRQERIKRALQA RQKRQSGSPDKNHTFKP L+ S +G SKLP GARVGDASA QGAYDLTVL+ +DGAFPPKRT+++IY DNRYD GGV + PM+FG+T DSLDRLA S +D RQRL+R GS S+ SA APP LPSPT + NG H R H+ AGEEA GG R R+ DPGGRWTGPTRE GAY + YD PA K RS AA +DALSHE+++RPHVRG+I+EEH D + RR V G DG GGA + R +GG E+GD E DG RPE ADFLASLRGGEG G GPG +Q ARAR R+PEWNSDT AAASLG P+ ++ DNSP+AVQ R+ESS A WKHKHTKTLPWG +G A+G G GG D D G + GFG TA R DE GG R GYR Q MMPSPSTG +T+A RGGG+R DD PP RGVPA KEQLRRNLSLLKKKMH QAGSRRSQSAGPRAG+LFG PNA PS GG GG RQHLHMTTGTAPAMM A PGAFLRDR+ AER LGRRG GG R P+GPGSPYA+DPN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S AG RR + G SP GR AA R+ +G VGG G T R PDRRRAWEG +G GD XXXXXXXXXXXXXXXX +A +LPPDAFPD V+L++C+ CGRRFT ALEKHSRAC KVFQAKR + AEMR+KGTELEKFAK KGRAGG G XXXXXX PRGFDDTPV GA G ++SKWRQQSKQFRDALRQARVV DAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERH+QHCKNI+AKPSVLKKGSGSLLG AARK++SGASG+G+ QRW Sbjct: 1 MQHASGKDYDPSEWAKQRQERIKRALQA--RQKRQSGSPDKNHTFKPHLLSSNDGARSKLPPGARVGDASATQGAYDLTVLDNMDGAFPPKRTSANIYRDNRYDKADGGV-----RGPMDFGETRDSLDRLAVSTSDVDRQRLARMGSTSSYSSAVAPPPLPSPTKSESTQDNNGSEHTHRPHAPRAGEEAATGGRRRIIRE-----DPGGRWTGPTRETAAAQNGGAYGE--YD----PATKRGAGDAFNGEGGRRSAAAATGDDALSHELEQRPHVRGAIAEEHRPGQPRHGRDDQQGRRTV------GDDGPVHA--GGAEEAAAATRRYSGGATG--ENGDPHPAEP-----RDGIERPEGADFLASLRGGEGAEAGANRQRGGSRVGPG------RQAARARRGRRPEWNSDTGAAASLGSPRAAIVADNSPSAVQGRIESSSARRRNTDGAVGSIADSPYAAGGGTIGGSNGTSATGG-----------------GNATWKHKHTKTLPWGGEGEALGEAGVVGGED--DGGRELYGFGRPTASQLARRGPDEGRGGAPRLGYRTQ-MMPSPSTGNLTAAY-------RGGGDRFGGDDEGMNPPVE-------------RGVPAEKEQLRRNLSLLKKKMHGQAGSRRSQSAGPRAGELFGDPNAAPSGPGGVDSHLEGGGRQHLHMTTGTAPAMMPADPGAFLRDRDAAERALGRRGVGGGARXXXXPDGPGSPYAIDPNARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--STNPAGGRRHGPFE----GKHDSPRTGFTSGRTAAPADVARSRPHDHSG---AGDVGGGGTRYTRRGTHAAAPARPGGGRARVGGASGGQGSPDRRRAWEGENGGXXXXXSQGDXXXXXXXXXXXXXXXXXXXXGXXXXXXEGYADDLPPDAFPDEQVELEECRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEKGRAGGRG----GXXXXXXXXXPPRGFDDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIRAKPSVLKKGSGSLLGQAARKTASGASGKGRGQRW 1063
BLAST of mRNA_L-elsbetiae_contig59.14366.1 vs. uniprot
Match: A0A835Z9Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y9_9STRA) HSP 1 Score: 165 bits (417), Expect = 1.490e-39 Identity = 105/190 (55.26%), Postives = 126/190 (66.32%), Query Frame = 1 Query: 2701 APVKLQDCKMCGRRFTSEALEKHSRACQKVFQAKRXXXNAAEMRIKGTELEKF-AKTKGRAGGGGKRXXXXXXXXXEKARPRGFDDTPVRGAGGEKASKWRQQSKQFRDALRQARVVTDAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHIQHCKNIKAKPSVLKKGSGSLLGHAARKSS 3267 A V+LQ C CGRRF +A KH C++VF KR +AA+MR+ GTE+ +F AKT G XXXXXXXXX G DD PV G GG K++KWRQQS FR+A+R AR+VT AQ G LA LP +APDPSL+PCPHC RRF+E A ERHI C +I+A+PS L KGSG LG A+RK S Sbjct: 232 ADVQLQQCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGRGSAXXXXXXXXXXXXXXXXXTG-DDQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSGRGLGVASRKPS 420
BLAST of mRNA_L-elsbetiae_contig59.14366.1 vs. uniprot
Match: A0A7S4DGN0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGN0_HETAK) HSP 1 Score: 135 bits (340), Expect = 5.110e-32 Identity = 94/187 (50.27%), Postives = 118/187 (63.10%), Query Frame = 1 Query: 2713 LQDCKM-CGRRFTSEALEKHSRACQKVFQAKRXXXNAAEMRIKGTELEK-FAKTKGR--AGGGGKRXXXXXXXXXEKARPRGFDDTPVRGAGGEKASKWRQQSKQFRDALRQARVVTDAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHIQHCKNIKAKPSVLKKGSGSLLGHAARK 3261 L +C + CGR+F +AL KH + C+KVF KR + + RI G E K AKTK A XXXXXXXXX A P +D PV G KASKW+ QS Q R+A++Q R++ +K GKSLADLP PSAPDPSL+PCP CGRRF++ A +RHI C I+ KP L++G+ LG AARK Sbjct: 31 LYECGVGCGRKFNEKALAKHEKVCRKVFVEKRRAFDTQQQRITGEEHAKALAKTKQEEAARXXXXXXXXXXXXXXXXANP---EDQPV---GNGKASKWKAQSDQLREAMKQQRLIARYEKEGKSLADLPQMAPSAPDPSLVPCPTCGRRFNQQAADRHIPKCATIRNKPKTLQRGARVGLGAAARK 211
BLAST of mRNA_L-elsbetiae_contig59.14366.1 vs. uniprot
Match: A0A5A8D635_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D635_CAFRO) HSP 1 Score: 132 bits (331), Expect = 8.530e-28 Identity = 86/180 (47.78%), Postives = 105/180 (58.33%), Query Frame = 1 Query: 2719 DCKMCGRRFTSEALEKHSRACQKVFQAKRXXXNAAEMRIKGTELEKFAKTKGRAGGGGKRXXXXXXXXXEKAR-PRGFDDTPVRGAGG-------EKASKWRQQSKQFRDALRQARVVTDAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHIQHCKNIKAKPSVLKKGSG 3234 +C CGR+F +ALEKH+R C KVFQ KR ++ R+ L G GG XXXXXXXX AR PR P A G K WRQ+S Q R+A++ +R++T AQK GK L DLPP +APDPSL+PCPHCGR F+ +A ERHI C KAKPS L +G G Sbjct: 475 ECSTCGRKFRPDALEKHARVCLKVFQKKRRKFDSTSARMPPEAL-----AVGADGGXXXXXXXXXXXXGAPARGPRSRGGPPAGSAAGGADAAARAKREAWRQKSSQLREAMKASRMITKAQKEGKDLRDLPPMPAAAPDPSLVPCPHCGRTFNAVAAERHIPKCATTKAKPSRLARGGG 649
BLAST of mRNA_L-elsbetiae_contig59.14366.1 vs. uniprot
Match: A0A5D6XYR0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYR0_9STRA) HSP 1 Score: 119 bits (299), Expect = 6.810e-27 Identity = 81/188 (43.09%), Postives = 107/188 (56.91%), Query Frame = 1 Query: 2665 FAAELPPDAFPDAPVKLQDCKMCGRRFTSEALEKHSRACQKVFQAKRXXXNAAEMRIKGTELEKFAKTKGRAGGGGKRXXXXXXXXXEKARPRGFDDTPVRGAGGEKASKWRQQSKQFRDALRQARVVTDAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHIQHCKNIKAKPSVLKKG 3228 F + PD FPD ++ +C C RRF +L KH + C+KVF +R N A R++GTE EK AK G++G XXXXXXX E+ P+ K W+ +S FRDA++ +R VT A K G+ +LPP KPSAPDPSLI C +C RRF++ A ERHI C+ K + LK G Sbjct: 11 FGSSEQPDEFPDESEEMAECDNCHRRFNVNSLVKHRKVCEKVFTGQRKVFNMAAKRLEGTEAEKVAKKTGKSGXXXXXXXXXXXXAEEQ---------PL------KKPDWKSKSSAFRDAMKASRDVTIALKEGR---ELPPMKPSAPDPSLIQCEYCSRRFNDKAAERHITFCRE-KTQRDSLKSG 179
BLAST of mRNA_L-elsbetiae_contig59.14366.1 vs. uniprot
Match: A0A5A8DGU2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DGU2_CAFRO) HSP 1 Score: 127 bits (319), Expect = 3.680e-26 Identity = 73/172 (42.44%), Postives = 90/172 (52.33%), Query Frame = 1 Query: 2719 DCKMCGRRFTSEALEKHSRACQKVFQAKRXXXNAAEMRIKGTELEKFAKTKGRAGGGGKRXXXXXXXXXEKARPRGFDDTPVRGAGGEKASKWRQQSKQFRDALRQARVVTDAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHIQHCKNIKAKPSVLKKGSG 3234 +C CGR+F +ALEKH+R C KVFQ KR KF T+G P G A K WRQ+S Q R+A++ +R++T AQK GK L DLPP +APDPSL+PCPHCGR F+ +A ERHI C KAKPS L +G G Sbjct: 586 ECSTCGRKFRPDALEKHARVCLKVFQKKR---------------RKFDSTRG-------------------GPPAGSAAGGADAAARAKREAWRQKSSQLREAMKASRMITKAQKEGKDLRDLPPMPAAAPDPSLVPCPHCGRTFNAVAAERHIPKCATTKAKPSRLARGGG 723
BLAST of mRNA_L-elsbetiae_contig59.14366.1 vs. uniprot
Match: A0A8J4ER22_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ER22_9CHLO) HSP 1 Score: 120 bits (302), Expect = 3.270e-25 Identity = 89/193 (46.11%), Postives = 109/193 (56.48%), Query Frame = 1 Query: 2674 ELPPDAF---PDAPVKLQDCKMCGRRFTSEALEKHSRACQKVFQAKRXXXNAAEMRIKGTELEKFAKTKGR---AGGGGKRXXXXXXXXXEKARPRGFDDTPVRGAGGEKASKWRQQSKQFRDALRQARVVTDAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHIQHCKNIKAKPSVLKKGSG 3234 +LPPDA D C CGRRF EA +KH+R C KVF KR N+A RI GT+ F + A G XXXXXXXXX A RG RG GG+ A W+ QS Q R A+R+ R V A G+ + ++P PSAPDPSL+ CP+CGRRF+ A ERHI C +I +KP LK G+G Sbjct: 219 DLPPDADGYGDDGGEARVQCGTCGRRFLPEAYDKHARVCAKVFAGKRKVFNSAAKRIGGTDAAGFYNPRAAQRPAPPAGXXXXXXXXXXXXSAMGRGGGPGDFRGGGGKPA--WKAQSDQLRQAMREMRKVGAALARGEDIRNIPH-VPSAPDPSLVQCPNCGRRFNAQAAERHIPRCASIVSKPKFLKAGTG 408
BLAST of mRNA_L-elsbetiae_contig59.14366.1 vs. uniprot
Match: G4Z0N9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z0N9_PHYSP) HSP 1 Score: 122 bits (305), Expect = 4.420e-25 Identity = 75/180 (41.67%), Postives = 102/180 (56.67%), Query Frame = 1 Query: 2686 DAFPDAPVKLQDCKMCGRRFTSEALEKHSRACQKVFQAKRXXXNAAEMRIKGTELEKFAK-TKGRAGGGGKRXXXXXXXXXEKARPRGFDDTPVRGAGGEKASKWRQQSKQFRDALRQARVVTDAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHIQHCK------NIKA 3204 D + D ++ C C R+F + EKH + C+KVF +R N A R++GTE EK A+ KG+A G G R KA P + P++ A+ W+Q+S+ FR+A++ +R VT A K GK +LPP PSAPDPSLI C +C RRF+E A ERHI C+ NIKA Sbjct: 333 DEYGDGAEVMEQCHNCNRKFNVVSFEKHQKICEKVFSGQRKVFNMAAKRLEGTEAEKLAREAKGKASGSGSR----------KA-PLSATEQPIKAKS---AADWKQKSEMFRNAMKASRDVTKALKEGK---ELPPVMPSAPDPSLIQCEYCSRRFNEKAAERHINFCREKSQRDNIKA 495
BLAST of mRNA_L-elsbetiae_contig59.14366.1 vs. uniprot
Match: A0A7R9VCN1_9CHLO (Hypothetical protein n=2 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VCN1_9CHLO) HSP 1 Score: 123 bits (309), Expect = 6.960e-25 Identity = 71/179 (39.66%), Postives = 98/179 (54.75%), Query Frame = 1 Query: 2698 DAPVKLQDCKMCGRRFTSEALEKHSRACQKVFQAKRXXXNAAEMRIKGTELEKFAKTKGRAGGGGKRXXXXXXXXXEKARPRGFDDTPVRGAGGEKASKWRQQSKQFRDALRQARVVTDAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHIQHCKNIKAKPSVLKKGSG 3234 D+ + +C CGRRF EALEKH+R C +VF KR +++ R++GTE +A R GG K G G+GG + KW+ QS+ +DA++ R + G+ + ++P SAPDPSL+ CPHCGRRF+E A ERH+ HC N AKP LK G+G Sbjct: 597 DSDMDRVECGSCGRRFLPEALEKHARVCSRVFANKRRPYDSSRHRLEGTEAAAYAGP--RRGG--------------KPAAHGSSHGGKSGSGGGEVPKWKAQSQALQDAMKNMRELKSRLARGEDIRNIPVVA-SAPDPSLVQCPHCGRRFNERAAERHMSHCANTVAKPKFLKAGTG 758
BLAST of mRNA_L-elsbetiae_contig59.14366.1 vs. uniprot
Match: A0A8J5J921_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J921_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.900e-24 Identity = 62/169 (36.69%), Postives = 92/169 (54.44%), Query Frame = 1 Query: 2686 DAFPDAPVKLQDCKMCGRRFTSEALEKHSRACQKVFQAKRXXXNAAEMRIKGTELEKFAKTKGRAGGGGKRXXXXXXXXXEKARPRGFDDTPVRGAGGEKASKWRQQSKQFRDALRQARVVTDAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHIQHCK 3192 D + D +++ C C R+F + + +KH + C+KVF +R N A R++GTE EK AK + P + P++ A+ W+Q+S+ FR+A++ +R V+ A K GK +LPP PSAPDPSLI C +C RRF+E A ERHI C+ Sbjct: 23 DEYGDGAEQMEQCHNCSRKFNAASFQKHQKICEKVFSGQRKVFNMAAKRLEGTEAEKLAKE-----------AKTNNKGPTRKTPLSATEQPIKVKS---AADWKQKSEMFRNAMKASRDVSKALKEGK---ELPPVMPSAPDPSLIQCEYCSRRFNEKAAERHINFCR 174 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig59.14366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig59.14366.1 >prot_L-elsbetiae_contig59.14366.1 ID=prot_L-elsbetiae_contig59.14366.1|Name=mRNA_L-elsbetiae_contig59.14366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1102bp MQHASGKDYDPSAWAKQRQERIKRALQASTRQKRQSGSPDKNHTFKPQLVback to top mRNA from alignment at L-elsbetiae_contig59:52736..63610- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig59.14366.1 ID=mRNA_L-elsbetiae_contig59.14366.1|Name=mRNA_L-elsbetiae_contig59.14366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10875bp|location=Sequence derived from alignment at L-elsbetiae_contig59:52736..63610- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig59:52736..63610- >mRNA_L-elsbetiae_contig59.14366.1 ID=mRNA_L-elsbetiae_contig59.14366.1|Name=mRNA_L-elsbetiae_contig59.14366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6612bp|location=Sequence derived from alignment at L-elsbetiae_contig59:52736..63610- (Laminarionema elsbetiae ELsaHSoW15)back to top |