mRNA_L-elsbetiae_contig5890.14356.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5890.14356.1
Unique NamemRNA_L-elsbetiae_contig5890.14356.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5890.14356.1 vs. uniprot
Match: A0A1Y2CB00_9FUNG (L domain-like protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CB00_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 1.120e-13
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   31 PQIVSGWEHSTYAHRSTDRYSYIGKDDTTGEPEWIDYGGK 150
            P I+SGWEHSTYAHR T+RY+YIGKDD  GEP+WIDYG K
Sbjct:  235 PTIISGWEHSTYAHRDTERYAYIGKDD--GEPQWIDYGSK 272
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BLAST of mRNA_L-elsbetiae_contig5890.14356.1 vs. uniprot
Match: A0A0L0G851_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G851_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 1.170e-12
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   10 PPATQDNPQIVSGWEHSTYAHRSTDRYSYIGKDDTTGEPEWIDYGGKQANA 162
            PP+ +  PQI+SGWEHS YAHR T+R +Y GK+D  G+PEW+DYG K A +
Sbjct:    9 PPSPE--PQIISGWEHSRYAHRDTERNAYKGKNDG-GDPEWLDYGSKSARS 56
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5890.14356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Y2CB00_9FUNG1.120e-1377.50L domain-like protein n=1 Tax=Rhizoclosmatium glob... [more]
A0A0L0G851_9EUKA1.170e-1258.82Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5890contigL-elsbetiae_contig5890:8730..8921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.3255544-CDS-L-elsbetiae_contig5890:8729..89211622816636.3255544-CDS-L-elsbetiae_contig5890:8729..8921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5890 8730..8921 -
1691683702.104821-CDS-L-elsbetiae_contig5890:8729..89211691683702.104821-CDS-L-elsbetiae_contig5890:8729..8921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5890 8730..8921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5890.14356.1prot_L-elsbetiae_contig5890.14356.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5890 8730..8921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5890.14356.1

>prot_L-elsbetiae_contig5890.14356.1 ID=prot_L-elsbetiae_contig5890.14356.1|Name=mRNA_L-elsbetiae_contig5890.14356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
APPPPATQDNPQIVSGWEHSTYAHRSTDRYSYIGKDDTTGEPEWIDYGGK
QANAEAAQQRRNK*
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mRNA from alignment at L-elsbetiae_contig5890:8730..8921-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5890.14356.1 ID=mRNA_L-elsbetiae_contig5890.14356.1|Name=mRNA_L-elsbetiae_contig5890.14356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=192bp|location=Sequence derived from alignment at L-elsbetiae_contig5890:8730..8921- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCGCCCCCGCCGGCCACCCAGGACAACCCACAAATCGTATCTGGGTG
GGAACACTCGACCTACGCGCACCGCAGCACGGACCGTTACTCCTACATCG
GAAAAGACGACACCACGGGGGAGCCCGAGTGGATTGACTATGGCGGCAAG
CAGGCCAACGCCGAAGCTGCGCAGCAACGCAGAAATAAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5890:8730..8921-

>mRNA_L-elsbetiae_contig5890.14356.1 ID=mRNA_L-elsbetiae_contig5890.14356.1|Name=mRNA_L-elsbetiae_contig5890.14356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig5890:8730..8921- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCGCCCCCGCCGGCCACCCAGGACAACCCACAAATCGTATCTGGGTG
GGAACACTCGACCTACGCGCACCGCAGCACGGACCGTTACTCCTACATCG
GAAAAGACGACACCACGGGGGAGCCCGAGTGGATTGACTATGGCGGCAAG
CAGGCCAACGCCGAAGCTGCGCAGCAACGCAGAAATAAGTAAGCGCCGCC
CCCGCCGGCCACCCAGGACAACCCACAAATCGTATCTGGGTGGGAACACT
CGACCTACGCGCACCGCAGCACGGACCGTTACTCCTACATCGGAAAAGAC
GACACCACGGGGGAGCCCGAGTGGATTGACTATGGCGGCAAGCAGGCCAA
CGCCGAAGCTGCGCAGCAACGCAGAAATAAGTAA
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