mRNA_L-elsbetiae_contig589.14355.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig589.14355.1
Unique NamemRNA_L-elsbetiae_contig589.14355.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig589.14355.1 vs. uniprot
Match: A0A6H5KQA5_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.150e-40
Identity = 87/131 (66.41%), Postives = 99/131 (75.57%), Query Frame = 1
Query:   16 TSNRTHDGRVSVLCRFRHVLDREGE-RGPSRGRGSDWLSFGEGE--------HDGGEAA--DTVTVRMGGIWSRRGFDKVFKPGVGQAEVYDEVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGSTDTLS 375
            TSN+  D RV VLCRFR  ++R+GE RG  RG+   WL FG G         H+GGE A  DTV+VRMGG WS RGFD+V KPGV QA+VY +VKRVAHGVSQGFNGTIFAYGQTG+GKTYTMGG+T TLS
Sbjct:  125 TSNQ--DDRVRVLCRFRRTVERDGEERGSPRGK---WLVFGGGXXXXXXXXXHEGGEGAPLDTVSVRMGGAWSTRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGAGKTYTMGGATATLS 250          
BLAST of mRNA_L-elsbetiae_contig589.14355.1 vs. uniprot
Match: D8LL93_ECTSI (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL93_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 4.020e-30
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1
Query:  184 MGGIWSRRGFDKVFKPGVGQAEVYDEVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGSTDTLSFTPRCSSP 399
            MGG WSRRGFD+V KPGV QA+VY +VKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGG+T TLS +P  ++P
Sbjct:    1 MGGAWSRRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGATATLSASPAAATP 72          
BLAST of mRNA_L-elsbetiae_contig589.14355.1 vs. uniprot
Match: A0A8C5UVC0_MICMU (Kinesin-like protein n=7 Tax=Lemuriformes TaxID=376915 RepID=A0A8C5UVC0_MICMU)

HSP 1 Score: 62.8 bits (151), Expect = 2.350e-8
Identity = 46/122 (37.70%), Postives = 58/122 (47.54%), Query Frame = 1
Query:   37 GRVSVLCRFRHVLDREGERGPSRGRGSDWLSFGEGEHDGGEAADTVTVRMGGIWSRRG---------------FDKVFKPGVGQAEVYDEVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGG 357
            G + V CR R VL   GE  P  G    +L F  G   GG +     + +     RRG               FD+VF PG GQ EV++E+  +      G+   IFAYGQTGSGKT+TM G
Sbjct:  305 GNIRVFCRVRPVLP--GEPTPPSG----FLLFPSGP--GGPSDPPTRLTLSQTDQRRGTLSGAPAPTNRHDFSFDRVFPPGSGQDEVFEEISMLVQSALDGYPVCIFAYGQTGSGKTFTMEG 418          
BLAST of mRNA_L-elsbetiae_contig589.14355.1 vs. uniprot
Match: A0A8B7X5X9_MICMU (Kinesin-like protein n=3 Tax=Microcebus murinus TaxID=30608 RepID=A0A8B7X5X9_MICMU)

HSP 1 Score: 62.8 bits (151), Expect = 2.360e-8
Identity = 46/122 (37.70%), Postives = 58/122 (47.54%), Query Frame = 1
Query:   37 GRVSVLCRFRHVLDREGERGPSRGRGSDWLSFGEGEHDGGEAADTVTVRMGGIWSRRG---------------FDKVFKPGVGQAEVYDEVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGG 357
            G + V CR R VL   GE  P  G    +L F  G   GG +     + +     RRG               FD+VF PG GQ EV++E+  +      G+   IFAYGQTGSGKT+TM G
Sbjct:  327 GNIRVFCRVRPVLP--GEPTPPSG----FLLFPSGP--GGPSDPPTRLTLSQTDQRRGTLSGAPAPTNRHDFSFDRVFPPGSGQDEVFEEISMLVQSALDGYPVCIFAYGQTGSGKTFTMEG 440          
BLAST of mRNA_L-elsbetiae_contig589.14355.1 vs. uniprot
Match: A0A8B6YBN3_CAMFR (Kinesin-like protein n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8B6YBN3_CAMFR)

HSP 1 Score: 62.4 bits (150), Expect = 3.200e-8
Identity = 50/136 (36.76%), Postives = 62/136 (45.59%), Query Frame = 1
Query:   37 GRVSVLCRFRHVLDREGERGPSRGRGSDWLSFGEGEHDGGEAADTVTVRMGGIWSRRG---------------FDKVFKPGVGQAEVYDEVKRVAHGVSQGFNGTIFAYGQTGSGKTYTM----GGSTDTLSFTPR 387
            G + V CR R VL   GE  P  G    +L F  G   GG +     + +     RRG               FD+VF PG GQ EV++E+  +      G+   IFAYGQTGSGKT+TM    GG T      PR
Sbjct:  309 GNIRVFCRVRPVLP--GESTPPPG----FLLFPPGP--GGPSDPPTRLSLSRSDERRGTLSGAPAPTTRHDFSFDRVFPPGSGQDEVFEEISMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDTQMEGLIPR 436          
BLAST of mRNA_L-elsbetiae_contig589.14355.1 vs. uniprot
Match: M3XTI3_MUSPF (Kinesin-like protein n=42 Tax=Laurasiatheria TaxID=314145 RepID=M3XTI3_MUSPF)

HSP 1 Score: 62.4 bits (150), Expect = 3.200e-8
Identity = 48/123 (39.02%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   37 GRVSVLCRFRHVLDREGERGPSRGRGSDWLSFGEGEHDGGEAADTVT-VRMGGIWSRRG---------------FDKVFKPGVGQAEVYDEVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGG 357
            G + V CR R VL   GE  PS G    +L F  G    G ++DT T + +     RRG               FD+VF PG GQ +V++E+  +      G+   IFAYGQTGSGKT+TM G
Sbjct:  308 GNIRVFCRVRPVLP--GEPTPSPG----FLLFPSGP---GGSSDTPTRLSVSRSDERRGTLSGTPAPTTRHDFSFDRVFPPGSGQDQVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEG 421          
BLAST of mRNA_L-elsbetiae_contig589.14355.1 vs. uniprot
Match: A0A3Q2I4C9_HORSE (Kinesin-like protein n=6 Tax=Equus TaxID=9789 RepID=A0A3Q2I4C9_HORSE)

HSP 1 Score: 62.4 bits (150), Expect = 3.200e-8
Identity = 47/122 (38.52%), Postives = 59/122 (48.36%), Query Frame = 1
Query:   37 GRVSVLCRFRHVLDREGERGPSRGRGSDWLSFGEGEHDGGEAADTVTVRMGGIWSRRG---------------FDKVFKPGVGQAEVYDEVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGG 357
            G + V CR R VL   GE  PS G    +L F  G   GG +     + +     RRG               FD+VF PG GQ EV++E+  +      G+   IFAYGQTGSGKT+TM G
Sbjct:  310 GNIRVFCRVRPVLP--GEPTPSPG----FLLFPSGP--GGPSDLPTRLSLSRSDERRGTLSGAPAPPTRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEG 423          
BLAST of mRNA_L-elsbetiae_contig589.14355.1 vs. uniprot
Match: A0A6J2DUA6_ZALCA (kinesin-like protein KIFC1 isoform X4 n=1 Tax=Zalophus californianus TaxID=9704 RepID=A0A6J2DUA6_ZALCA)

HSP 1 Score: 62.0 bits (149), Expect = 4.250e-8
Identity = 46/122 (37.70%), Postives = 59/122 (48.36%), Query Frame = 1
Query:   37 GRVSVLCRFRHVLDREGERGPSRGRGSDWLSFGEGEHDGGEAADTVTVRMGGIWSRRG---------------FDKVFKPGVGQAEVYDEVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGG 357
            G + V CR R VL   GE  PS G    +L F  G   GG +     + +     RRG               FD+VF PG GQ +V++E+  +      G+   IFAYGQTGSGKT+TM G
Sbjct:  335 GNIRVFCRVRPVL--AGEPTPSPG----FLLFPSGP--GGPSDPPTRLSVSRSDDRRGTLSGAPAPTTRHDFSFDRVFPPGSGQDQVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEG 448          
BLAST of mRNA_L-elsbetiae_contig589.14355.1 vs. uniprot
Match: A0A7F8R7B1_LEPWE (kinesin-like protein KIFC1 n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A7F8R7B1_LEPWE)

HSP 1 Score: 62.0 bits (149), Expect = 4.260e-8
Identity = 46/122 (37.70%), Postives = 59/122 (48.36%), Query Frame = 1
Query:   37 GRVSVLCRFRHVLDREGERGPSRGRGSDWLSFGEGEHDGGEAADTVTVRMGGIWSRRG---------------FDKVFKPGVGQAEVYDEVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGG 357
            G + V CR R VL   GE  PS G    +L F  G   GG +     + +     RRG               FD+VF PG GQ +V++E+  +      G+   IFAYGQTGSGKT+TM G
Sbjct:  367 GNIRVFCRVRPVLP--GEPTPSPG----FLLFPSGP--GGPSDPPTRLSVSRSDDRRGTLSGAPAPTTRHDFSFDRVFPPGSGQDQVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEG 480          
BLAST of mRNA_L-elsbetiae_contig589.14355.1 vs. uniprot
Match: A0A7E6DLV0_9CHIR (Kinesin-like protein n=21 Tax=Microchiroptera TaxID=30560 RepID=A0A7E6DLV0_9CHIR)

HSP 1 Score: 62.0 bits (149), Expect = 4.340e-8
Identity = 47/122 (38.52%), Postives = 59/122 (48.36%), Query Frame = 1
Query:   37 GRVSVLCRFRHVLDREGERGPSRGRGSDWLSFGEGEHDGGEAADTVTVRMGGIWSRRG---------------FDKVFKPGVGQAEVYDEVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGG 357
            G + V CR R VL   GE  P  G    +L F  G   GG +  +  V +     RRG               FD+VF PG GQ EV++E+  +      G+   IFAYGQTGSGKT+TM G
Sbjct:  310 GNIRVFCRVRPVLP--GEPTPPPG----FLLFPSGP--GGPSDPSTHVSLFRSDERRGTLSGVPAAPTRYDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEG 423          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig589.14355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQA5_9PHAE3.150e-4066.41Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D8LL93_ECTSI4.020e-3079.17Kinesin motor domain-containing protein (Fragment)... [more]
A0A8C5UVC0_MICMU2.350e-837.70Kinesin-like protein n=7 Tax=Lemuriformes TaxID=37... [more]
A0A8B7X5X9_MICMU2.360e-837.70Kinesin-like protein n=3 Tax=Microcebus murinus Ta... [more]
A0A8B6YBN3_CAMFR3.200e-836.76Kinesin-like protein n=2 Tax=Boreoeutheria TaxID=1... [more]
M3XTI3_MUSPF3.200e-839.02Kinesin-like protein n=42 Tax=Laurasiatheria TaxID... [more]
A0A3Q2I4C9_HORSE3.200e-838.52Kinesin-like protein n=6 Tax=Equus TaxID=9789 RepI... [more]
A0A6J2DUA6_ZALCA4.250e-837.70kinesin-like protein KIFC1 isoform X4 n=1 Tax=Zalo... [more]
A0A7F8R7B1_LEPWE4.260e-837.70kinesin-like protein KIFC1 n=1 Tax=Leptonychotes w... [more]
A0A7E6DLV0_9CHIR4.340e-838.52Kinesin-like protein n=21 Tax=Microchiroptera TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig589contigL-elsbetiae_contig589:24701..26094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue2.8e-24
Seed eggNOG ortholog2880.D8LL93
KEGG koko:K10405,ko:K10406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Ec32 ortholog descriptionKinesin-like protein
Ec32 orthologEc-27_001770.1
Exons2
Model size517
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.2785864-CDS-L-elsbetiae_contig589:24700..249671622816636.2785864-CDS-L-elsbetiae_contig589:24700..24967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 24701..24967 -
1691683702.082524-CDS-L-elsbetiae_contig589:24700..249671691683702.082524-CDS-L-elsbetiae_contig589:24700..24967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 24701..24967 -
1622816636.290194-CDS-L-elsbetiae_contig589:25845..260941622816636.290194-CDS-L-elsbetiae_contig589:25845..26094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 25846..26094 -
1691683702.0963104-CDS-L-elsbetiae_contig589:25845..260941691683702.0963104-CDS-L-elsbetiae_contig589:25845..26094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 25846..26094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig589.14355.1prot_L-elsbetiae_contig589.14355.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig589 24701..26094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig589.14355.1

>prot_L-elsbetiae_contig589.14355.1 ID=prot_L-elsbetiae_contig589.14355.1|Name=mRNA_L-elsbetiae_contig589.14355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
DDGSSTSNRTHDGRVSVLCRFRHVLDREGERGPSRGRGSDWLSFGEGEHD
GGEAADTVTVRMGGIWSRRGFDKVFKPGVGQAEVYDEVKRVAHGVSQGFN
GTIFAYGQTGSGKTYTMGGSTDTLSFTPRCSSPPPRSPSAVAPVFDSSAT
AMGAVSEPSTPACAATTSTTQA
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mRNA from alignment at L-elsbetiae_contig589:24701..26094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig589.14355.1 ID=mRNA_L-elsbetiae_contig589.14355.1|Name=mRNA_L-elsbetiae_contig589.14355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1394bp|location=Sequence derived from alignment at L-elsbetiae_contig589:24701..26094- (Laminarionema elsbetiae ELsaHSoW15)
GATGACGGCAGCAGTACAAGCAACAGGACTCACGATGGGAGGGTGTCGGT GCTGTGTCGATTCCGACACGTCTTGGACCGGGAGGGCGAACGGGGACCGT CCCGAGGGCGGGGATCCGATTGGCTGAGCTTTGGCGAGGGTGAGCACGAT GGTGGCGAGGCGGCGGACACGGTCACCGTGCGGATGGGCGGTATTTGGAG CAGGAGAGGCTTTGACAAGGTGTTCAAGCCTGGCGTGGGGCAAGCGGAGG TACGCATGCCGCCGATGTAGTCTAAAGGACCAACTGACTGCTGTGGGTGG TGCCGTTGTTTGCTGGGGCAGATTGAGTGAGTGTTTCTGACCCTAGTTTC TGAGTGTATCGACAATCGGGTTACTACAGCCCAGGGCCCAGGACTGCAAG CAAGCATTTTACGGTTGACGGCTATATACATATGTACCTACGCGCTGGTA ATGTACAAACGTCACCCACACGCCACGCATCTGCGGCTATTCGCCACACA ATAAATTGGCTCTTGCAACAGTCCTCCACGTACATATTTGCTGCGCTACA TATCTATCTGTCTGAGACACCGCGTATGTTATGTAAACAACGGCATCCAC GGTGTGGTCTTCTGTGTTTGCGTCTGATTGCTCTCTGCTGCAGTTTCCTC TTTGCTCTTTCCGTGGCGATCTACTCTAGATAAAGCGTGTTGCGCGAAAA TGGAGTCGGGTCTGGAGAAAGAAAGCGTCGGTGCAGACATTGACGGTTTG CTGCGCTATGTACGTGTTTTACCCTTGAAGCTAGCCGTGATGTACCCTAG CTGTGCTGTACCAAGGGTATGTAGTAGCCGTATGCATGTTGTGTACGTCA CTCGCGAAATAACTCCCAAGCACCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCTCCGCCGCCTGCG GCCCGTGGGGTGCGCGGCGCGCGCCCGTGCANNNNNNNNNNCCTCACTTT GCTTTTCCGAGGGTATGCAGTATCCCAATGCATTCTGTGTTCGTCCCCCG CGAAATACATCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCGTTGTCTC TCTCGTTCCGCCTGTGCGGACGAAAAGGTGTACGACGAGGTTAAGCGCGT GGCTCACGGGGTTTCCCAGGGCTTCAACGGGACCATCTTCGCCTACGGCC AAACGGGCTCCGGCAAGACCTACACGATGGGCGGCTCGACGGATACGCTC TCCTTCACCCCCCGTTGCTCTTCTCCCCCCCCCCGGTCTCCCTCCGCCGT CGCCCCCGTCTTCGATAGCAGTGCAACCGCAATGGGCGCCGTTTCTGAAC CCTCGACGCCCGCCTGTGCCGCGACAACCTCGACAACGCAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig589:24701..26094-

>mRNA_L-elsbetiae_contig589.14355.1 ID=mRNA_L-elsbetiae_contig589.14355.1|Name=mRNA_L-elsbetiae_contig589.14355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig589:24701..26094- (Laminarionema elsbetiae ELsaHSoW15)
GATGACGGCAGCAGTACAAGCAACAGGACTCACGATGGGAGGGTGTCGGT
GCTGTGTCGATTCCGACACGTCTTGGACCGGGAGGGCGAACGGGGACCGT
CCCGAGGGCGGGGATCCGATTGGCTGAGCTTTGGCGAGGGTGAGCACGAT
GGTGGCGAGGCGGCGGACACGGTCACCGTGCGGATGGGCGGTATTTGGAG
CAGGAGAGGCTTTGACAAGGTGTTCAAGCCTGGCGTGGGGCAAGCGGAGG
ATGACGGCAGCAGTACAAGCAACAGGACTCACGATGGGAGGGTGTCGGTG
CTGTGTCGATTCCGACACGTCTTGGACCGGGAGGGCGAACGGGGACCGTC
CCGAGGGCGGGGATCCGATTGGCTGAGCTTTGGCGAGGGTGAGCACGATG
GTGGCGAGGCGGCGGACACGGTCACCGTGCGGATGGGCGGTATTTGGAGC
AGGAGAGGCTTTGACAAGGTGTTCAAGCCTGGCGTGGGGCAAGCGGAGGT
GTACGACGAGGTTAAGCGCGTGGCTCACGGGGTTTCCCAGGGCTTCAACG
GGACCATCTTCGCCTACGGCCAAACGGGCTCCGGCAAGACCTACACGATG
GGCGGCTCGACGGATACGCTCTCCTTCACCCCCCGTTGCTCTTCTCCCCC
CCCCCGGTCTCCCTCCGCCGTCGCCCCCGTCTTCGATAGCAGTGCAACCG
CAATGGGCGCCGTTTCTGAACCCTCGACGCCCGCCTGTGCCGCGACAACC
TCGACAACGCAGGCGGTGTACGACGAGGTTAAGCGCGTGGCTCACGGGGT
TTCCCAGGGCTTCAACGGGACCATCTTCGCCTACGGCCAAACGGGCTCCG
GCAAGACCTACACGATGGGCGGCTCGACGGATACGCTCTCCTTCACCCCC
CGTTGCTCTTCTCCCCCCCCCCGGTCTCCCTCCGCCGTCGCCCCCGTCTT
CGATAGCAGTGCAACCGCAATGGGCGCCGTTTCTGAACCCTCGACGCCCG
CCTGTGCCGCGACAACCTCGACAACGCAGGCG
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