mRNA_L-elsbetiae_contig589.14353.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig589.14353.1
Unique NamemRNA_L-elsbetiae_contig589.14353.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig589.14353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig589contigL-elsbetiae_contig589:9725..14968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2671
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig589.14353.1prot_L-elsbetiae_contig589.14353.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig589 9840..13177 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.0379856-UTR-L-elsbetiae_contig589:9724..98391622816636.0379856-UTR-L-elsbetiae_contig589:9724..9839Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig589 9725..9839 +
1691683701.8828516-UTR-L-elsbetiae_contig589:9724..98391691683701.8828516-UTR-L-elsbetiae_contig589:9724..9839Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig589 9725..9839 +
1622816636.0988834-UTR-L-elsbetiae_contig589:13177..149681622816636.0988834-UTR-L-elsbetiae_contig589:13177..14968Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig589 13178..14968 +
1691683701.932518-UTR-L-elsbetiae_contig589:13177..149681691683701.932518-UTR-L-elsbetiae_contig589:13177..14968Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig589 13178..14968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.0488014-CDS-L-elsbetiae_contig589:9839..98701622816636.0488014-CDS-L-elsbetiae_contig589:9839..9870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 9840..9870 +
1691683701.8940032-CDS-L-elsbetiae_contig589:9839..98701691683701.8940032-CDS-L-elsbetiae_contig589:9839..9870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 9840..9870 +
1622816636.0636625-CDS-L-elsbetiae_contig589:10678..108871622816636.0636625-CDS-L-elsbetiae_contig589:10678..10887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 10679..10887 +
1691683701.9043765-CDS-L-elsbetiae_contig589:10678..108871691683701.9043765-CDS-L-elsbetiae_contig589:10678..10887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 10679..10887 +
1622816636.0770926-CDS-L-elsbetiae_contig589:11646..118711622816636.0770926-CDS-L-elsbetiae_contig589:11646..11871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 11647..11871 +
1691683701.913279-CDS-L-elsbetiae_contig589:11646..118711691683701.913279-CDS-L-elsbetiae_contig589:11646..11871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 11647..11871 +
1622816636.0880601-CDS-L-elsbetiae_contig589:12877..131771622816636.0880601-CDS-L-elsbetiae_contig589:12877..13177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 12878..13177 +
1691683701.9239998-CDS-L-elsbetiae_contig589:12877..131771691683701.9239998-CDS-L-elsbetiae_contig589:12877..13177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig589 12878..13177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig589.14353.1

>prot_L-elsbetiae_contig589.14353.1 ID=prot_L-elsbetiae_contig589.14353.1|Name=mRNA_L-elsbetiae_contig589.14353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MTAAGSVTLSALSGDFCSDLGSSVENVIEDGNNSTLLAPLVEHYTGDCSQ
NLANLAVASIGAAQEVAKGTMGVAMGILTTASKLCSEASDNVQLMDASME
TLWDSLDEAAEVVSCPKINGLYRSAVWDDLCAELPGWLISLLVSCMTLSA
LLLLLWVQWSLLLRRWREEDGVELGTVPFGYGGKPRSKAAGITGTAGSYV
SEYGTAAYVSGGGGDFGQGQHFPIRSPSSSGSAAIGGGGGGDFDLLPDIL
EGVR*
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mRNA from alignment at L-elsbetiae_contig589:9725..14968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig589.14353.1 ID=mRNA_L-elsbetiae_contig589.14353.1|Name=mRNA_L-elsbetiae_contig589.14353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5244bp|location=Sequence derived from alignment at L-elsbetiae_contig589:9725..14968+ (Laminarionema elsbetiae ELsaHSoW15)
TGAGGATGAGGATGATGATGACGCTGACGTTCGGGGAAAACGGAGACGCT
GCTGCGGCAGGCGAGGCGGGCGGTGCCTGCGGTTTGTGACGTTCGTTCTG
GCCTTCTTGGTGTGGATGACGGCCGCCGGTTCGGTGACGCTCAGCGGTAC
GTCGCGTTTCGCGCGCGTGTATGTTTGGTGTGTGTGTGTCTGTGTGTGTG
TGTGTGTTGTGTGTGTGTGCGTGTCTTGTGTGTCTGTGTGTCTGTGTCTG
TGTCTGTGTGTCTGTGTGTTGTGTCTGTGTGTGTGTGCGTGCCTTGTGTG
TCTGTGTGTCTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTCTTG
TGTGTGTGTGTGTGTTGTGTGTGTGTGCGTGTCTTGTGTGTCTTGTGTCT
TGTGTGTCTGTGTGTCTGTGTGTCTGTGTCTGTGTTTGTGTGCGTGCCTT
GTGTGTCTGTGTGTCTGTGTGTCTGTGTCTGTGTGTGTGTGTGGGTGGTG
CGTGCGTGCGTGCGTGCGTGTGCGTGTGTGTGTGTGTGTGTGCTTCTGAA
GTGTATCGCACTGCACACGGCGGTGGCGAGGCGAATTGAAGCCGTTTCAG
CAATGCTCGTTTCGGCCCCGCGCTTTGGTGCGTAAGGTGCATACGTGGAC
GACGTCGAAACACGATTCGAAGCTATTTAGGGCGGAGTCAACAAGGCACG
AAGTGCACGTATCAGCTGTACATAGCGTTGTTTTTTCATTTTTCGACTAG
TTGCAGCATTGACTCGATAAACAGAACACCGCAGCACAGAAGGTATTGTA
GACTAGACCCGGACCACGAATCGAACAGAGTTCAAGAATAAACGCCCCTT
TTTTTTCTCTGCCTTTCCCCTCAACCCTTTCCGTCCCCCTCTCTCTGCCC
CCCGTCGCGCCTTCTCCCGGAAACACAAACACCCACCACCAACAACAACA
ACAGCCTTGTCCGGCGACTTCTGCTCCGACCTGGGGTCGAGCGTGGAGAA
CGTGATCGAGGACGGGAACAACTCCACGCTGCTCGCGCCGCTCGTGGAGC
ACTACACGGGAGACTGCTCGCAGAACCTGGCCAACCTGGCCGTGGCGTCG
ATCGGGGCGGCGCAGGAGGTGGCCAAGGGCACAATGGGAGTCGCGATGGG
CATCCTGACAACGGTGAGGTTGTTCGTTAAAAATCAGAGCTGACATTTGT
GACTTTCCATTGTATTTTTTCTCAACGGTGAGTCGTTACATGTTCAGAAC
TGACCTGTGTCTCTTCTGTTCTGTTCTAATCTGTTCTCTTATTTTATTTT
ATTTTATTTTATTTATTTAGAATCGCAGTTTTTTCTCTGTTTCTATCTGT
GTAAAGGTGATGCGTGTGGAGGAGACACACGTGGGGACCCTCATTGTACT
AGTGCGAGGGGTTTGTGCGCCCTCCTGCGGCAGACGAGCGCGCGCGCGGC
CACGTTTCTTTCTCATCTACGCCCGCCTACCTCGCCTACCGTTTCTTTTA
AAAAATAAGCAATGAATCAAAGATGGAACCTACCCCACACTAGAGCAAGG
ACTCGATATGGGGTTCAAACGGTATTTCATACAGAGACGTAATATTTGGC
GAAGCGAGCAGAAAAACAACCTAAATATCAGAAGGGTTCAGCATCTCCCC
TGCAAAGATTTAAGATTTGCGAGGTCGGCCGACAATTATTCAGGCGGGTA
GAGCCCGCCGTGATGCCGTAATTTTTGTCGTGTATAGATACACACTCTTA
ACGATAGATTAGCTGCATACATAGCGTATGTAGGTATGTACAGCAGTCAA
ACCTATCTCAAGTTCGCGCATCGCACTTTAGCGACCCCACCCATCCGCCC
ACCGTGAAGTTCTTGTCCGTCGCAACAACAACAACAACAACAACAACAAC
CGCGGTTCTACTACTCCACCAGGCCTCCAAGTTGTGCAGCGAGGCATCGG
ACAACGTGCAGCTGATGGACGCGTCGATGGAGACCCTGTGGGACTCGCTG
GACGAGGCGGCGGAGGTGGTGTCCTGCCCGAAGATCAACGGCCTCTACCG
CTCGGCCGTGTGGGACGACCTGTGCGCGGAGCTTCCCGGGTGGCTCATCT
CCTTGCTTGTGTCGTGCATGACGCTGTCGGCCCTGCTACTCCTCTTGGTG
AGTCGGTGGTGGTGGTGACCTCTGTTGATGTTGTTTGCTTTCTGCTTTTC
ACGTTCAACCGCCGTTACGGCCGTTACGGCCCACGCCCGTTCATGTGTAC
CTGTTGCTGTTGTTGTTGTTGGTGGTGTTATTTCTCACATTAGCTCTCTG
TTCAGTCCAAAAACATGTTATTGTTGTTGTTTCTCACAACAATAGCTCTC
TATTTAGTCCAAAATTATCCATGGAGGCTCGTGGTCACAAAAACAGCGCA
CACTCTACGCCGAGGAAGAAATGGCACACCCCGCCAAATAACGTCAAGTT
GATTGGTCTCAAAGGCCGACCTTTCCGAGTCCGAGTTGTGCCACCCGCGG
CCGGGCAGCTGAGAAGGGGGACGGTCGATTGCAAAAATGAACGAGCCCCC
CCCCCCGAGGGACAATCCTTTGAACTATCACACCACACCACATCACATCA
CATAATACCATACCGTATCATATCATACCGTACGTCACGGTGTGACTGGT
GAGTGTCACGTGATCATGACCGGCCCCTGTCTCCACCCATCAAATCACCC
ACCCTCATACTCGCGATAAAAACATCTGAGGCAGGCACCGCGGGAGGGGG
TCTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCGCCCCCCCCCTTTTTCCGATAAAAACATCTG
GGGGCGGGCCCGCGGGGGGGGGGCTCCCCCCCCCCCCCCCCCCTACTGTG
TGACCCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGAGGAAGGGGGCCAGT
GGGGGCAGACGACAAATATGCCAATAATGGGAGGAAAAAGAAAAAAGAAA
AACAAATACCCCCATATTTATCCTCACACACCCTCGACACCGCCTCTCGA
CCGCCGCCGGATGCCCCACCTCCCCCACATGCACATGCATATTTACGATC
ACGGTGCCCCCCGCCGCTGCCGCCGCCGCTCCGCCGCTGACAAACAAACA
CAGTGGGTCCAGTGGAGCCTCCTGCTGCGGCGCTGGAGAGAAGAAGACGG
CGTGGAGCTGGGGACGGTTCCCTTCGGGTACGGCGGCAAGCCGCGCTCGA
AAGCCGCCGGCATCACCGGCACGGCCGGCTCCTACGTGAGCGAGTACGGC
ACGGCGGCGTACGTGAGCGGCGGCGGCGGCGACTTCGGCCAGGGACAGCA
CTTCCCCATCCGCTCTCCGTCTTCTTCCGGCTCTGCCGCGATCGGCGGCG
GCGGCGGCGGCGACTTTGACTTGCTGCCCGACATTCTCGAAGGGGTTCGA
TGAAGGGAAGCGAGCGAGCATTGTGGGGGGGGTCGTCTTCGGTCTGGTCG
TCTCGCCCGCTGGCGGTGTTTTCCGCTGCTTGGGTGGCCCGGCCCGTATA
GCGGTGATGGCGGCGGTTTCGGTATTGCTGCTGGGGGTTCGTGGTATCGT
GCTGGTGAATGATACTGACAAGTGATCCAGGTAGCCCTCGCGATATAGAA
GTATGGCGGACAGTTTTTTCCGCGGGAAGGGCGTTGCGTAGATGCCAGGC
AGCAACACCCCGGGACTAGATTGCATCGCGGCCGGGCGGGTCGGGGGCGG
GGACGCGAGTGTCTGGGAGCAGCTGTTCCCGCTTTTCAGCTTTTCTGCCC
TCTTGAATTTTTCCATGTCTGAAGTTTATGGGTGTCAGTGTTCGATTTGT
GTTGTTTAGTTTCCCGCCTTGTTTTCGTGGCGATGATGTTGGTGGGAGGT
CGGGGCACGGAGAGGAGGGGTATGTCGTGCGTCTCGTTGGTCCAATATGT
CTCTTCCGGAGGAGATGAGAGTGCCGCGTGCTGACTGGCGTCCCCGGTGT
GTATACAGGTAATCTGCGCCCCCCCCCCTCTCCTCCTCCCCTCCTAAACA
GGCAGAATTTTGGACACTACATACTGCTGTTGTCGTTCGCCTGTTGCTGC
TGTAGTTTAGGAGTGCCGCGTTAGTCTTTAAAACCCGAGTAACATGCGGT
GGGTACCCGCCGCCGCTCGCTGTAATGGTACGCCGGGCACGGGACTTGGG
GCTGAAGCGCTCGCGCTTTTATGCTACGTCTTAGACTGCTGTTGTTTTGG
TTAGTTTACCGGTTTATTTTTGTCTAGATATGGGTCGAATGTCCGGAGCG
CCGCAGTAGTCGGCCAGTCACTCAGAACGGGTACCTAGGAACTTGCGCGT
AATGGTGTACCGGCGTTGCGTGCGTGCCAGGTGTAGGGTTAGGGGGGGTT
GTTGTAGGGCATTCATTGACTTTGGGGAGGTTGCGTTGAAACGCATGCCG
GAGTATGTAGCTTTCGTTGTGTGTCGAATGTATGTATTATGAGAGCAGAT
GCGCTGCGTTCGCGGGGGGCGTGTTGTTGGGAACGCGCAGCGTCGCTGTT
CCCCCCCCCCCTGTTCTATATCAGTCCCCTGCTTAGTTTAGGTTTATCCC
TCAAGAGGAGACGTGGTTGATATTTTCAGCGTGTACTATGTACCTGTCTG
TCTACCCTGGAGTAGTACATCGGGGTTTCCAATGTTTTCTGTGCTGGGAA
CTTTTTCGCGTTGTCTGTGAAGCCGGCAGCTTTGTTGAAAGGTCTGGTCT
GGAGGGATGGTGCATGTTGTGGTTAAAACTAGCCCGGGCAACGCTGTTTC
AGCTGCCACTTTGTGCCCTGTATTGTCGGCATCAAAGCGTGCGTAGAGAG
GAGGTATGTTTTTAGAGTCGGGTTCACAATAGATTGGGGGAGCAGCCTTT
TTCGCAACCATCATACCCGTGGAATTCTGAGTGAATTTAGAGGTATGCAG
TACTTAACGTCGCGAAGCTCGATCGCGCTTGGGGTTGTTGTTGTGATCGA
ATAGCTTATTCTGCATGGGTGCTGCGCAATCTTACAGGCTATTATAGTCG
TGCGTGATTAGACAAGGACTATTATAGCCGGGTCGAATGTTATATCCTTC
GCTTCCAATATGTAGGGGTGGGGGTAATCGAGTCACTGAATGCTGGTGTT
GGCTTTTCGAGGGGTCGTGGTGAGGATGATACGGCTGTAGCTCGCACCCA
GAGAGGTGGCTCCTCGGGCCTGCAGCAATATACTGGCTTTTAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig589:9725..14968+

>mRNA_L-elsbetiae_contig589.14353.1 ID=mRNA_L-elsbetiae_contig589.14353.1|Name=mRNA_L-elsbetiae_contig589.14353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig589:9725..14968+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGCCGCCGGTTCGGTGACGCTCAGCGATGACGGCCGCCGGTTCGG
TGACGCTCAGCGCCTTGTCCGGCGACTTCTGCTCCGACCTGGGGTCGAGC
GTGGAGAACGTGATCGAGGACGGGAACAACTCCACGCTGCTCGCGCCGCT
CGTGGAGCACTACACGGGAGACTGCTCGCAGAACCTGGCCAACCTGGCCG
TGGCGTCGATCGGGGCGGCGCAGGAGGTGGCCAAGGGCACAATGGGAGTC
GCGATGGGCATCCTGACAACGCCTTGTCCGGCGACTTCTGCTCCGACCTG
GGGTCGAGCGTGGAGAACGTGATCGAGGACGGGAACAACTCCACGCTGCT
CGCGCCGCTCGTGGAGCACTACACGGGAGACTGCTCGCAGAACCTGGCCA
ACCTGGCCGTGGCGTCGATCGGGGCGGCGCAGGAGGTGGCCAAGGGCACA
ATGGGAGTCGCGATGGGCATCCTGACAACGGCCTCCAAGTTGTGCAGCGA
GGCATCGGACAACGTGCAGCTGATGGACGCGTCGATGGAGACCCTGTGGG
ACTCGCTGGACGAGGCGGCGGAGGTGGTGTCCTGCCCGAAGATCAACGGC
CTCTACCGCTCGGCCGTGTGGGACGACCTGTGCGCGGAGCTTCCCGGGTG
GCTCATCTCCTTGCTTGTGTCGTGCATGACGCTGTCGGCCCTGCTACTCC
TCTTGGCCTCCAAGTTGTGCAGCGAGGCATCGGACAACGTGCAGCTGATG
GACGCGTCGATGGAGACCCTGTGGGACTCGCTGGACGAGGCGGCGGAGGT
GGTGTCCTGCCCGAAGATCAACGGCCTCTACCGCTCGGCCGTGTGGGACG
ACCTGTGCGCGGAGCTTCCCGGGTGGCTCATCTCCTTGCTTGTGTCGTGC
ATGACGCTGTCGGCCCTGCTACTCCTCTTGTGGGTCCAGTGGAGCCTCCT
GCTGCGGCGCTGGAGAGAAGAAGACGGCGTGGAGCTGGGGACGGTTCCCT
TCGGGTACGGCGGCAAGCCGCGCTCGAAAGCCGCCGGCATCACCGGCACG
GCCGGCTCCTACGTGAGCGAGTACGGCACGGCGGCGTACGTGAGCGGCGG
CGGCGGCGACTTCGGCCAGGGACAGCACTTCCCCATCCGCTCTCCGTCTT
CTTCCGGCTCTGCCGCGATCGGCGGCGGCGGCGGCGGCGACTTTGACTTG
CTGCCCGACATTCTCGAAGGGGTTCGATGATGGGTCCAGTGGAGCCTCCT
GCTGCGGCGCTGGAGAGAAGAAGACGGCGTGGAGCTGGGGACGGTTCCCT
TCGGGTACGGCGGCAAGCCGCGCTCGAAAGCCGCCGGCATCACCGGCACG
GCCGGCTCCTACGTGAGCGAGTACGGCACGGCGGCGTACGTGAGCGGCGG
CGGCGGCGACTTCGGCCAGGGACAGCACTTCCCCATCCGCTCTCCGTCTT
CTTCCGGCTCTGCCGCGATCGGCGGCGGCGGCGGCGGCGACTTTGACTTG
CTGCCCGACATTCTCGAAGGGGTTCGATGA
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