mRNA_L-elsbetiae_contig5889.14351.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5889.14351.1 vs. uniprot
Match: D8LE75_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE75_ECTSI) HSP 1 Score: 311 bits (797), Expect = 5.220e-99 Identity = 160/192 (83.33%), Postives = 167/192 (86.98%), Query Frame = 2 Query: 2 RVFKLMDEKDNARERRRKVFEYFSTAISRQNNFQTAEVYEISRELLMLVDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQVQIVQEMKRSNSARSQVNSQLSLRVETLRHMFSTKEVGASNLEAWEKAHHDLLTSQEANSYLQMGRSWEQILESILLLFNYWKVNLKDDNIVFGDAGKSTGNDYFA 577 RVFKLMDEKDNARERRRKVFEYF+ AISRQNNFQT E+YE+SRELLMLVDEFRELLDRLFSWCDLCLP N+QAFAESHRQKIQKFQVQIVQEMKRSNSARSQ EV NLEAWEKAHHDLLTSQEAN+YLQMGRSWEQILES+LLL+NYWKVNLKDDNIVFGDAGKSTGNDYFA Sbjct: 39 RVFKLMDEKDNARERRRKVFEYFNGAISRQNNFQTGEIYEVSRELLMLVDEFRELLDRLFSWCDLCLPGNDQAFAESHRQKIQKFQVQIVQEMKRSNSARSQ-------------------EVDGGNLEAWEKAHHDLLTSQEANAYLQMGRSWEQILESLLLLYNYWKVNLKDDNIVFGDAGKSTGNDYFA 211
BLAST of mRNA_L-elsbetiae_contig5889.14351.1 vs. uniprot
Match: A0A836CFQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ5_9STRA) HSP 1 Score: 283 bits (725), Expect = 1.440e-87 Identity = 140/192 (72.92%), Postives = 168/192 (87.50%), Query Frame = 2 Query: 2 RVFKLMDEKDNARERRRKVFEYFSTAISRQNNFQTAEVYEISRELLMLVDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQVQIVQEMKRSNSARSQVNSQLSLRVETLRHMFSTKEVGASNLEAWEKAHHDLLTSQEANSYLQMGRSWEQILESILLLFNYWKVNLKDDNIVFGDAGKSTGNDYFA 577 +VFKL+ EKD+ARERR+KVFE+F ISR N+FQT VYE++ E+L+ +DEFRELLD+LFSWCDLCLPANEQ+FAESHR KIQKFQ+QIV EMKR+NSAR+QVN L+ RVETLR +F+TKEV A NLE WEKAH +LLT QE+N+YL MGRSWEQ+LES LLL+NYW +NLK D+IVFGDAG+S+GNDYFA Sbjct: 69 KVFKLISEKDHARERRQKVFEHFRDNISRVNSFQTGTVYEVTHEVLVFIDEFRELLDKLFSWCDLCLPANEQSFAESHRLKIQKFQMQIVNEMKRTNSARTQVNLHLTQRVETLRQLFTTKEVAAVNLEGWEKAHSELLTLQESNAYLVMGRSWEQLLESYLLLYNYWVLNLKHDSIVFGDAGRSSGNDYFA 260
BLAST of mRNA_L-elsbetiae_contig5889.14351.1 vs. uniprot
Match: D7G572_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G572_ECTSI) HSP 1 Score: 188 bits (478), Expect = 1.010e-50 Identity = 96/191 (50.26%), Postives = 126/191 (65.97%), Query Frame = 2 Query: 2 RVFKLMDEKDNARERRRKVFEYFSTAISRQNNFQTAEVYEISRELLMLVDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQVQIVQEMKRSNSARSQVNSQLSLRVETLRHMFSTKEVGASNLEAWEKAHHDLLTSQEANSYLQMGRSWEQILESILLLFNYWKVNLKDDNIVFGDAGKSTGNDYF 574 RV L A++RR KVFEYF A+++ N FQ EVY +S++LL ++DE RE L+ L +WCDLCLPANEQAFAE+HR KIQ FQ + + S + +N+QL R +TLR +FSTK+V N E W + H ++L E N+YL SWE++LE LL +NY+K+NLKD IVF GK GNDYF Sbjct: 129 RVLTLFASDSLAKDRRNKVFEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQHFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYRLHREMLVHHEVNAYLSAATSWEKLLEDYLLYYNYYKMNLKDSTIVFQSEGKGGGNDYF 319
BLAST of mRNA_L-elsbetiae_contig5889.14351.1 vs. uniprot
Match: A0A835YMR0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR0_9STRA) HSP 1 Score: 180 bits (457), Expect = 1.470e-48 Identity = 89/183 (48.63%), Postives = 131/183 (71.58%), Query Frame = 2 Query: 29 DNARERRRKVFEYFSTAISRQNNFQTAEVYEISRELLMLVDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQVQIVQEMKRSNSARSQVNSQLSLRVETLRHMFSTKEVGASNLEAWEKAHHDLLTSQEANSYLQMGRSWEQILESILLLFNYWKVNLKDDNIVFGDAGKST-GNDYF 574 D+AR+RR KVF +F++ +S+ N+FQT EV+ +S E+L ++DE RE L+ + +WCDLCLPANE AFAE+HR K+Q FQ + + ++ ++VNSQL R +TL+ +F+TK+V N W +AH DLL E N+YLQ+ + WE++LE +L +NYWK N+KD ++ FG+ GKS G+DYF Sbjct: 70 DHARDRRNKVFAFFNSHVSQPNSFQTDEVFRVSEEVLSVLDESREQLELVTNWCDLCLPANETAFAEAHRLKLQDFQDYLSGGVTGIVNSINEVNSQLEKRAQTLQLLFTTKDVLPENRTGWIRAHRDLLVHSETNAYLQVAKIWEKVLEDYVLYYNYWKTNIKDGDLAFGNQGKSERGSDYF 252
BLAST of mRNA_L-elsbetiae_contig5889.14351.1 vs. uniprot
Match: A0A836C7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7X8_9STRA) HSP 1 Score: 168 bits (426), Expect = 2.780e-44 Identity = 88/188 (46.81%), Postives = 123/188 (65.43%), Query Frame = 2 Query: 14 LMDEKDNARERRRKVFEYFSTAISRQNNFQTAEVYEISRELLMLVDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQVQIVQEMKRSNSARSQVNSQLSLRVETLRHMFSTKEVGASNLEAWEKAHHDLLTSQEANSYLQMGRSWEQILESILLLFNYWKVNLKDDNIVFGDAGKST-GNDYF 574 L D+A++RR KVF +F I+ ++QT +V+++S E+L ++DE RELL+ L +WCDLCLPANE AFAE+ R KIQ FQ + + ++ ++VN QL R TL+ +F+TK+V N W KAH DLL E N+YL+M + WE++LE +L FNYWK NLKD ++ F GK G DYF Sbjct: 56 LFSTDDSAKDRRTKVFAFFDANITEATSYQTDQVFKLSEEVLSVLDECRELLELLMNWCDLCLPANETAFAEALRIKIQDFQEYLSGGVTGLANSTNEVNLQLEKRARTLQLLFTTKDVLPENRAGWIKAHRDLLVHCETNAYLRMAKIWEKVLEDYVLYFNYWKTNLKDGDLAFAHMGKGERGGDYF 243
BLAST of mRNA_L-elsbetiae_contig5889.14351.1 vs. uniprot
Match: D8LEA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA5_ECTSI) HSP 1 Score: 164 bits (414), Expect = 1.360e-42 Identity = 85/190 (44.74%), Postives = 121/190 (63.68%), Query Frame = 2 Query: 5 VFKLMDEKDNARERRRKVFEYFSTAISRQNNFQTAEVYEISRELLMLVDEFRELLDRLFSWCDLCLPANEQAFAESHRQKIQKFQVQIVQEMKRSNSARSQVNSQLSLRVETLRHMFSTKEVGASNLEAWEKAHHDLLTSQEANSYLQMGRSWEQILESILLLFNYWKVNLKDDNIVFGDAGKSTGNDYF 574 +F L+D D AR RRRKV ++F T +++N + ++ E S + L+L+DE REL+DRL SW +CLPAN+ + SHR+K++ F+ ++ E+K RS V S S RV T+R MF TK+V +NL WE AHH+LL QE +YL M R W ++S LL++ YWKVNLKD +I F G+ +F Sbjct: 54 IFTLVDANDTARARRRKVLDFFMTR-TKENLNRAGQIQECSHQCLVLIDELRELMDRLISWLTMCLPANDHPLSVSHRRKLKLFKGRLRNEVKILEGLRSGVTSAHSGRVHTIRSMFLTKDVAENNLLGWETAHHELLVMQETEAYLSMCRFWMSTMDSALLVYKYWKVNLKDADIAFATGNNGNGHHHF 242 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5889.14351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5889.14351.1 >prot_L-elsbetiae_contig5889.14351.1 ID=prot_L-elsbetiae_contig5889.14351.1|Name=mRNA_L-elsbetiae_contig5889.14351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp MDEKDNARERRRKVFEYFSTAISRQNNFQTAEVYEISRELLMLVDEFRELback to top mRNA from alignment at L-elsbetiae_contig5889:2306..9079+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5889.14351.1 ID=mRNA_L-elsbetiae_contig5889.14351.1|Name=mRNA_L-elsbetiae_contig5889.14351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6774bp|location=Sequence derived from alignment at L-elsbetiae_contig5889:2306..9079+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5889:2306..9079+ >mRNA_L-elsbetiae_contig5889.14351.1 ID=mRNA_L-elsbetiae_contig5889.14351.1|Name=mRNA_L-elsbetiae_contig5889.14351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig5889:2306..9079+ (Laminarionema elsbetiae ELsaHSoW15)back to top |