mRNA_L-elsbetiae_contig5887.14349.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5887.14349.1 vs. uniprot
Match: D7G1T1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T1_ECTSI) HSP 1 Score: 828 bits (2140), Expect = 5.720e-288 Identity = 480/628 (76.43%), Postives = 542/628 (86.31%), Query Frame = 1 Query: 1 RYTVGVQDGNVDPIKCGMTGADVPALLSRQLATDGIVLNPPSPVPVEEEES--KEKSGGLFTCGEDHADEDLEVRDNPKELE-ETKEREQFFASNGVPYPVYVPPGPSSQGHRRMARFVGTMKNAVWGFDPDHVFVLSKPAVVAQTHMPTFKEAEKHNLLQPLSAVPPAAKVLYVSHRWTDQGEPDTQDGHAFMQVKRYLEEHSGDNIQYIWMDVSCIDVFDKETVRYDQYMSNVVTVLSRATHMLAVPPCKTLDPRALIRDMAVARMAEKQAAAGKSPD--GSSSGR----DAAVARAVEEEVDAAILSRQVARPDKWSRVVLGADGGSDGSGGLSTATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRRRSSAGMGSKKSSTVAETVEQATAVEDGGPGVPVLSKKEKKAMLVAEAREDAAAAAAEVTHDVSQTPTVLTAPVLYSDPASLLGRGWVEMEVSLALVFGVEVLVCARWGPKVTFQSVLARSLMSEDGETEEQAPGFKGAFLHGVARIAPDVEEVKGFVVGVKRAIIGPERTADPTVPVRVVYAPMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGDIAPVDVMYRLSGVSV 1857 RY VGVQDGNVDP+KCG+ GAD+P+LLSRQLATDGI LNP KEKSGGLFTCGED+ADED+E D+P+ELE ETK +E FFASNGVPYPV+VPPGPSSQGHRRMARFV TMKNAVWGFDP+ VF+L+KPAV+AQ++MPTFKEA++H+LL+P+S++PPAAKVLYVSHRWT GEPDTQD HAFMQV+RYL+EHSGDNIQYIW+DVSC+DV +++ VRY+QYMSNVVTVL+R+THMLAVPPCKTLDPRAL+RDM VAR+ EKQ A GKSPD G GR D AV++A+EEEVDAAILSRQ++ P+KWS + + + SDG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K RR S+GMGSKKSS + E + TAV DGGPGVPVLSKKEKK LVA+AREDAA AAAEVTHDVSQTPTVLT PVL+SDPA+LL RGWVEMEVSLALVFGVEVLVC RWGPKVTFQSVLAR+L+SEDGET EQ PGF+GAFLHG+ARIAPDVEEVKGFVVG+KRA+IGPERTADPTVPVRVVY PMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGD++PVD+MYRLSG+++ Sbjct: 353 RYVVGVQDGNVDPVKCGVPGADLPSLLSRQLATDGIALNPXXXXXXXXXXXXXKEKSGGLFTCGEDNADEDVEPVDSPRELEQETKNQENFFASNGVPYPVFVPPGPSSQGHRRMARFVDTMKNAVWGFDPEQVFLLTKPAVLAQSYMPTFKEAQEHHLLEPMSSLPPAAKVLYVSHRWTGIGEPDTQDAHAFMQVQRYLKEHSGDNIQYIWIDVSCMDVGNRDNVRYEQYMSNVVTVLARSTHMLAVPPCKTLDPRALVRDMTVARLVEKQTAEGKSPDYLGXXXGRKTKGDEAVSKAIEEEVDAAILSRQLSHPEKWSSLAVDS---SDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKKGPSGRKSRR--SSGMGSKKSSAM-EVKTEITAVGDGGPGVPVLSKKEKKGFLVAQAREDAAEAAAEVTHDVSQTPTVLTEPVLHSDPAALLNRGWVEMEVSLALVFGVEVLVCVRWGPKVTFQSVLARTLVSEDGETVEQGPGFRGAFLHGIARIAPDVEEVKGFVVGMKRALIGPERTADPTVPVRVVYEPMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGDVSPVDIMYRLSGLAL 974
BLAST of mRNA_L-elsbetiae_contig5887.14349.1 vs. uniprot
Match: A0A6H5KEL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL6_9PHAE) HSP 1 Score: 801 bits (2070), Expect = 1.120e-278 Identity = 481/664 (72.44%), Postives = 547/664 (82.38%), Query Frame = 1 Query: 1 RYTVGVQDGNVDPIKCGMTGADVPALLSRQLATDGIVLNPP-SPVPVEE-EESKEKSGGLFTCGEDHADEDLEVRDNPKELE-ETKEREQFFASNGVPYPVYVPPGPSSQGHRRMARFVGTMKNAVWGFDPDHVFVLSKPAVVAQTHMPTFKEAEKHNLLQPLSAVPPAAKVLYVSHRWTDQGEPDTQDGHAFMQVKRYLEEHSGDNIQYIWMDVSCIDVFDKETVRYDQYMSNVVTVLSRATHMLAVPPCKTLDPRALIRDMAVARMAEKQAAAGKSPD-------------------------------------GSSSGR----DAAVARAVEEEVDAAILSRQVARPDKWSRVVLGADGGSDGSGGLSTATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRR-RSSAGMGSKKSSTVAETVEQATAVEDGGPGVPVLSKKEKKAMLVAEAREDAAAAAAEVTHDVSQTPTVLTAPVLYSDPASLLGRGWVEMEVSLALVFGVEVLVCARWGPKVTFQSVLARSLMSEDGETEEQAPGFKGAFLHGVARIAPDVEEVKGFVVGVKRAIIGPERTADPTVPVRVVYAPMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGDIAPVDVMYRLSGVSV 1857 RY VGVQDGNVDPIKCG+ GAD+P+LLSRQLATDGI LNPP +P P EE EE+KEKSGGLFTCGED+AD D+E ++P+ELE ETK+++ FFASNGVPYPV+VPPGPSSQGHRRMARFV TMKNAVWGFDP+ VFVL+KPAV+AQ++MPTFKEA++ +LL+P+S++ PAAKVLYVSHRW GEPDTQD HA +QV+RYL+EHSGDNIQYIW+DVSC+DV +++ VRY+QYMSNVVTVL+R+THMLAVPPCKTLDPRAL+RDM VAR+ EKQ A GKSP+ GS GR + AVA+A+EEEVDAAILSRQ++ PDKWS +V+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GR+ R GMGS+KSS V E + TAV D GPGVPVLSKKEKK +LVA+AREDAA AAAEVTHDVSQTPTVL P+L+SDPA+LL RGWVEMEVSLALVFGVEVLVC RWGPKVTFQSVLAR+L+SEDGE+ EQ PGFKGAFLHG+ARIAPDVEEVKGFVVGVKRA+IGPERTADPTVPVRVVY PMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGD++PVD+MYRLSG+++ Sbjct: 353 RYVVGVQDGNVDPIKCGVLGADLPSLLSRQLATDGIALNPPPTPPPGEEGEETKEKSGGLFTCGEDNAD-DVEPVNSPRELEQETKDQDHFFASNGVPYPVFVPPGPSSQGHRRMARFVDTMKNAVWGFDPEQVFVLTKPAVLAQSYMPTFKEAQERHLLEPMSSLHPAAKVLYVSHRWAGIGEPDTQDAHALLQVQRYLKEHSGDNIQYIWIDVSCMDVGNRDNVRYEQYMSNVVTVLARSTHMLAVPPCKTLDPRALVRDMTVARLVEKQTAEGKSPEYLKMLPTTTSNAVGSGFASAAPFLANGGGGPAPSTTIGSGGGRKTKGNEAVAKAIEEEVDAAILSRQLSHPDKWSSLVV-----DSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRASGRKSRXXXGMGSRKSSAV-EVKTETTAVGDRGPGVPVLSKKEKKELLVAQAREDAAEAAAEVTHDVSQTPTVLKEPILHSDPAALLNRGWVEMEVSLALVFGVEVLVCVRWGPKVTFQSVLARTLVSEDGESVEQGPGFKGAFLHGIARIAPDVEEVKGFVVGVKRALIGPERTADPTVPVRVVYEPMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGDVSPVDIMYRLSGLAL 1009
BLAST of mRNA_L-elsbetiae_contig5887.14349.1 vs. uniprot
Match: A0A7S2XWF9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWF9_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 8.890e-6 Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 1 Query: 505 VLYVSHRWTDQGEPDTQDGHAFMQVKRYLEE--HSGDNIQYIWMDVSCIDVFD------KETVRYDQYMSNVVTVLSRATHMLAVP 738 VL+VSHRW + EPD G F +K YL E G+ IQYIW+D SC+ D K+ R + + NV T + ++H L +P Sbjct: 60 VLFVSHRWASETEPDDAGGSQFAMIKSYLTELRGKGEMIQYIWIDCSCVAPVDSSESGAKKQARRLEVL-NVPTAIWISSHALLLP 144 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5887.14349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5887.14349.1 >prot_L-elsbetiae_contig5887.14349.1 ID=prot_L-elsbetiae_contig5887.14349.1|Name=mRNA_L-elsbetiae_contig5887.14349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=619bp RYTVGVQDGNVDPIKCGMTGADVPALLSRQLATDGIVLNPPSPVPVEEEEback to top mRNA from alignment at L-elsbetiae_contig5887:317..11116- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5887.14349.1 ID=mRNA_L-elsbetiae_contig5887.14349.1|Name=mRNA_L-elsbetiae_contig5887.14349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10800bp|location=Sequence derived from alignment at L-elsbetiae_contig5887:317..11116- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5887:317..11116- >mRNA_L-elsbetiae_contig5887.14349.1 ID=mRNA_L-elsbetiae_contig5887.14349.1|Name=mRNA_L-elsbetiae_contig5887.14349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3714bp|location=Sequence derived from alignment at L-elsbetiae_contig5887:317..11116- (Laminarionema elsbetiae ELsaHSoW15)back to top |