mRNA_L-elsbetiae_contig5886.14348.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5886.14348.1
Unique NamemRNA_L-elsbetiae_contig5886.14348.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5886.14348.1 vs. uniprot
Match: D8LSQ9_ECTSI (Similar to kinesin-C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ9_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 3.330e-41
Identity = 80/105 (76.19%), Postives = 91/105 (86.67%), Query Frame = 3 
Query:    3 EETQKFMEHLKQQARATYVPIGCAEKILEQAAVTAEATKARHQNIVVTLDATYREIDEKTRRHYAELILRLQREMQAELRRLAKECRAHEELAENLRDKIASQTV 317
            EE QKFM+H+KQQ RATYVP+GCAEKILEQA  TAE TK RHQN+VVTLDATYR I+++T RHYA+LILRLQ+EM+ ELRRLAKE +  EEL ENLRDKIASQT 
Sbjct:  116 EEMQKFMDHIKQQPRATYVPMGCAEKILEQAGATAEETKTRHQNVVVTLDATYRAINQRTTRHYADLILRLQQEMRTELRRLAKESKTQEELVENLRDKIASQTA 220
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5886.14348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSQ9_ECTSI3.330e-4176.19Similar to kinesin-C n=1 Tax=Ectocarpus siliculosu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5886contigL-elsbetiae_contig5886:7058..8043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue1.9e-33
Seed eggNOG ortholog2880.D8LSQ9
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size320
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5886.14348.1prot_L-elsbetiae_contig5886.14348.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5886 7078..8043 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.4873211-UTR-L-elsbetiae_contig5886:7057..70771622816635.4873211-UTR-L-elsbetiae_contig5886:7057..7077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5886 7058..7077 +
1691683701.4562101-UTR-L-elsbetiae_contig5886:7057..70771691683701.4562101-UTR-L-elsbetiae_contig5886:7057..7077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5886 7058..7077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.5036564-CDS-L-elsbetiae_contig5886:7077..71491622816635.5036564-CDS-L-elsbetiae_contig5886:7077..7149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5886 7078..7149 +
1691683701.469097-CDS-L-elsbetiae_contig5886:7077..71491691683701.469097-CDS-L-elsbetiae_contig5886:7077..7149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5886 7078..7149 +
1622816635.5207546-CDS-L-elsbetiae_contig5886:7527..76221622816635.5207546-CDS-L-elsbetiae_contig5886:7527..7622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5886 7528..7622 +
1691683701.4831316-CDS-L-elsbetiae_contig5886:7527..76221691683701.4831316-CDS-L-elsbetiae_contig5886:7527..7622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5886 7528..7622 +
1622816635.5351179-CDS-L-elsbetiae_contig5886:7910..80431622816635.5351179-CDS-L-elsbetiae_contig5886:7910..8043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5886 7911..8043 +
1691683701.500691-CDS-L-elsbetiae_contig5886:7910..80431691683701.500691-CDS-L-elsbetiae_contig5886:7910..8043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5886 7911..8043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5886.14348.1

>prot_L-elsbetiae_contig5886.14348.1 ID=prot_L-elsbetiae_contig5886.14348.1|Name=mRNA_L-elsbetiae_contig5886.14348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MEHLKQQARATYVPIGCAEKILEQAAVTAEATKARHQNIVVTLDATYREI
DEKTRRHYAELILRLQREMQAELRRLAKECRAHEELAENLRDKIASQTV*
back to top

mRNA from alignment at L-elsbetiae_contig5886:7058..8043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5886.14348.1 ID=mRNA_L-elsbetiae_contig5886.14348.1|Name=mRNA_L-elsbetiae_contig5886.14348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=986bp|location=Sequence derived from alignment at L-elsbetiae_contig5886:7058..8043+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAGGAGACGCAAAAATTTATGGAGCATCTAAAGCAGCAAGCAAGAGCG
ACGTACGTGCCCATTGGTTGTGCGGAGAAGATTCTTGAGCAGGTGATTGC
CTTCCGCGAATATGCCTTTTATCAATCCAGCGCAAATTGGTTTCACAACT
AGATTAGTATTGCATTACTCGAACAGTCACGGTTGGTCAGGCCGAGTAAC
CACCTTTCTGCACAGAGCCCCACTCTTGAGCAAGCGCCTCTACGTTGCTG
CTTAGGACGAATGAAAAAAGACCAGCAGAAAAAACATAGAAGTGTGTACC
ACGTAAATTTGCGTTTCAGAGGGAGCAGTTGCTAAAAGCTAAATAGCAAG
TATCTGCATCAGTTAACGGAAACCGTGGGCGTGAGCAGAGAGTAGGAGAC
GCCCTTCACCGCCCTCACTTTGTTTTTATCGTGATCAATTGCGCTCGTTG
GCTCGGACATCCTATTCCAGGCTGCGGTAACCGCCGAAGCGACGAAGGCT
AGACACCAGAATATTGTCGTCACCCTCGATGCCACCTACCGGGAGATCGA
CGAAAAAACGCGAAGGTGGGATCCTCGAAATTGTCATTCACGAATGCAGA
ACGATCTGGTGACTTTTCTGGAAACGGCCAGCTTGCATGAGACGGCGGTT
GCAACTCTCGCTCTGTGCCGCGTGCCCGTGTGCCCCCCGATTCCTGCCAG
TCTTTTTTCAGAAGAATGCACAATAAGCGGCTGATGTGAACACTGCTGTG
TACACTTAACTACCAAATCGGTGCCCACACGCGAACTGCTGTATCGATTC
TACTTGTGACGCCCCACCCGCGTCGGCCAACCATTGGTACCTGCGTCCTG
CAGGCACTACGCGGAGCTCATCTTGCGCCTCCAGAGAGAAATGCAGGCGG
AGCTCCGCCGGCTGGCGAAGGAGTGCAGGGCGCATGAAGAGCTTGCAGAG
AACCTCAGGGACAAGATTGCCTCGCAAACGGTGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5886:7058..8043+

>mRNA_L-elsbetiae_contig5886.14348.1 ID=mRNA_L-elsbetiae_contig5886.14348.1|Name=mRNA_L-elsbetiae_contig5886.14348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig5886:7058..8043+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCATCTAAAGCAGCAAGCAAGAGCGACGTACGTGCCCATTGGTTG
TGCGGAGAAGATTCTTGAGCAGATGGAGCATCTAAAGCAGCAAGCAAGAG
CGACGTACGTGCCCATTGGTTGTGCGGAGAAGATTCTTGAGCAGGCTGCG
GTAACCGCCGAAGCGACGAAGGCTAGACACCAGAATATTGTCGTCACCCT
CGATGCCACCTACCGGGAGATCGACGAAAAAACGCGAAGGCTGCGGTAAC
CGCCGAAGCGACGAAGGCTAGACACCAGAATATTGTCGTCACCCTCGATG
CCACCTACCGGGAGATCGACGAAAAAACGCGAAGGCACTACGCGGAGCTC
ATCTTGCGCCTCCAGAGAGAAATGCAGGCGGAGCTCCGCCGGCTGGCGAA
GGAGTGCAGGGCGCATGAAGAGCTTGCAGAGAACCTCAGGGACAAGATTG
CCTCGCAAACGGTGTGAGCACTACGCGGAGCTCATCTTGCGCCTCCAGAG
AGAAATGCAGGCGGAGCTCCGCCGGCTGGCGAAGGAGTGCAGGGCGCATG
AAGAGCTTGCAGAGAACCTCAGGGACAAGATTGCCTCGCAAACGGTGTGA
back to top