mRNA_L-elsbetiae_contig5877.14341.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5877.14341.1
Unique NamemRNA_L-elsbetiae_contig5877.14341.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A6H5KXH5_9PHAE (CMD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXH5_9PHAE)

HSP 1 Score: 518 bits (1333), Expect = 2.470e-179
Identity = 263/419 (62.77%), Postives = 313/419 (74.70%), Query Frame = 3
Query:   75 SAACVLSEHEIVLDKMTSERNHILDRWADPKALGLTSEEKALFAYQKANLKFLFGETGFNPPVPPRNPISVSTHNPRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSM-NHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLPVRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADELPLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDG--EKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQAMLGFRGTHAAVLWSSFLAAQRMCQRAFA 1322
            S A  + +  IVL K TSER+ ILD WAD +AL LT EE  L  YQ+ NLK LFGETGFNPPVP RNPISV+ HNPRF AALWAVNTEAYRRKG LSRSQK+++ALG+SL+N CPHCA+IHTAMGPAAGDDVD   ++ FY TQD D AFP+  GQ+ M N+  A+W+I HRDG+ +  PCTP+Q+PE +GT MLF +LNR+VD FVSK + GPMFPLP+R+MM+ +  TP++QR M+WM   MMHGED K+ AGK L +IN V PI+KGF G ADE P+ LPE +SWA TG +E I   FAFLAAEAE+LA  FV PA+K+  ESWVS WDG   +I   ++WL   V    A      DK DV MLRLMLVT+VAS   +DTLLSECQA+ GFRGTHAAVLWS+FLA QR CQ A A
Sbjct:    5 STAAAMDQEAIVLRKETSERDRILDNWADAEALQLTDEEANLNEYQRKNLKLLFGETGFNPPVPARNPISVTMHNPRFSAALWAVNTEAYRRKGLLSRSQKEVIALGVSLSNGCPHCAYIHTAMGPAAGDDVDFDSLRLFYQTQDADAAFPVGEGQDPMSNNTLASWSIRHRDGKEQAAPCTPEQLPEVVGTAMLFDILNRVVDTFVSKTEAGPMFPLPMRMMMKVQPATPLLQRAMSWMMSWMMHGEDVKVEAGKVLKEINEVHPIIKGFRGCADETPMALPEQLSWA-TGGDETIAAAFAFLAAEAELLAHAFVPPAVKSFTESWVSSWDGGAAQIGELEEWLGPTVR-VTASGLGEGDKGDVVMLRLMLVTIVASHRTDDTLLSECQAIHGFRGTHAAVLWSAFLAGQRSCQLAIA 421          
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: UPI00174AAE10 (carboxymuconolactone decarboxylase family protein n=2 Tax=Kitasatospora TaxID=2063 RepID=UPI00174AAE10)

HSP 1 Score: 97.1 bits (240), Expect = 1.890e-18
Identity = 89/345 (25.80%), Postives = 140/345 (40.58%), Query Frame = 3
Query:  285 VSTHNPRFG--AALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLPVRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADELPLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDGEKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQAMLGFRGTHAAV---LWSSFLAAQRM 1304
            ++ H+P  G  AA W +  E    +GA  R  K+ +A  +S+AN+CP C  +HTA            V+ S      P  A    AG+     E+A          A P P    Q+PE LGTV++   LNR+V+ F+    + P  P         ES    V R++ W+       E     +   LA                   P PLP  ++WA    N  I + FA  AA  E      V  A++  +   ++ WDG      + W +  V      +            RL+L+T +AS  +++T++++ +   G  G  A V    W+S  AA+++
Sbjct:   51 IALHSPATGPLAASWLMLRETMLVEGAAPRPAKEAVACAVSVANECPFCERMHTA------------VLHSLT----PGRATDCGAGRFDEVTEWARLGAVRDTAAANPRPFPSGQLPELLGTVVIMQYLNRMVNVFLGGVPLPPGAP---------ESSLRPVLRVLTWLIRSSARSEPAPGVSLDLLA-------------------PAPLPADLAWAE--GNPVIASAFARAAAAVEEAGRADVPKAVQELLHDTLARWDGRPPGLGRGWADQAVAALVPQERPA--------ARLVLLTALASYTVDETVIADFRRAAGEPGDRALVGLTAWASLTAARQV 341          
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A7W7WLP7_9ACTN (AhpD family alkylhydroperoxidase n=2 Tax=Kitasatospora gansuensis TaxID=258050 RepID=A0A7W7WLP7_9ACTN)

HSP 1 Score: 86.7 bits (213), Expect = 6.830e-15
Identity = 86/321 (26.79%), Postives = 136/321 (42.37%), Query Frame = 3
Query:  285 VSTHNPRFG--AALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKP-LPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLPVRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADELPLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDGEKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQA 1238
            ++ H+P FG  AA W +  E     G  +R+ K+ +A  +S+AN+CP C  +H+AM  +     D   ++     Q  D A   VA       + A      RD  AK   P   +QVPE LG+V++   LNR+V+ F+    + P  P         ES    V +++ W+       E K   AG  L           G   AA      LP  ++WAA  SN  I   FA  AA  E+     +   ++  +   V  WDG      + W ++ V    A++            RL L+T +A+  +++T++   +A
Sbjct:   51 IALHSPAFGPLAASWLMLREPMLVAGVAARTTKEAVAAAVSVANECPFCIRMHSAMLHSLAPGKDSAAIREGRLDQVADPAVRAVA---DWVRDGAV-----RDTAAKTRFPFAAEQVPELLGSVVIMHYLNRMVNVFLGAMPLPPGAP---------ESSLRPVMKVLTWLLRSAARAEPK---AGGTL-----------GLLPAA-----ALPADLAWAA--SNPQIAAAFARAAAAVELAGRAALPDGVRELVLDTVDAWDGRPPGLGRGWADAAVETRPAEERPA--------ARLALLTALAAYTVDETVVDAARA 325          
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A7Y5DLZ2_9SPHN (CMD domain-containing protein n=1 Tax=Novosphingobium sp. TaxID=1874826 RepID=A0A7Y5DLZ2_9SPHN)

HSP 1 Score: 84.7 bits (208), Expect = 2.700e-14
Identity = 91/345 (26.38%), Postives = 140/345 (40.58%), Query Frame = 3
Query:  276 PISVSTHNPRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTP---DQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLPVRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADEL--PLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDGEKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQAML-GFRGTHAAVLWSSFLA 1292
            P+++ +  P   A  W+   EA+       R+ ++ +A G+SLAN+CP+C  +HTAM  A+GD      ++S              AG +  ++   AWA   R   A  L   P     VP+ LGT +LF  +NR+V  F+S+       PLP+R      S  P                  +K+        + R     +   GA+  L    PLP    WAA  ++ AI    A L A  E      V   ++  +   V +W GE +  + +WL   V    ADD   +        RL L T +A+  ++  L++  +    G     A   WSS  A
Sbjct:   43 PLTIHSACPEILAGAWSAMREAFVVDPD-HRALREAVASGVSLANRCPYCVDVHTAMLDASGDHALADRIRS--------------AGAD--DNALIAWASATRQCGAPALEAPPFAKQLVPQLLGTAVLFHYINRLVSVFLSESAA----PLPLR------SALP------------------RKLFGRAFGGTVGRHLLAARAEPGASLHLLPDAPLPREFVWAA--ADRAIAGGLARLDAAVEAAGALHVPEPVRALVAQRVGIWRGEDVPLSDRWLAEAVSELAADDQRAS-------ARLALQTALAAYRVDGALIAAFRRHFPGDAPLLATAAWSSLTA 333          
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A5C4QTY6_9ACTN (Carboxymuconolactone decarboxylase family protein n=1 Tax=Micromonospora orduensis TaxID=1420891 RepID=A0A5C4QTY6_9ACTN)

HSP 1 Score: 75.1 bits (183), Expect = 4.750e-11
Identity = 83/361 (22.99%), Postives = 141/361 (39.06%), Query Frame = 3
Query:  276 PISVSTHNPRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIH--TAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLP--------VRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADELPLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDGEKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQAMLGFRGTHAAVL-----WSSFLAAQRMCQR 1313
            P+++ +  P   AA W++  E     G ++R+ K+ +A  +SLAN CP+CA +H  T  G   G D +        D  D                  A WA+T  +    P P    Q PE +GTV+ F  +NR+V+ F+ +  + P+  +          R+M R  S  P+                           D + + P  +            LP+ + WA   S  +I    A  A   +   E  ++ A +  + +  ++ +  +   T  WL+ ++G   A D            RL L+T V+S  I D++++  +A     G   A L     W+S  AA+ +  R
Sbjct:   49 PLALHSPAPSVLAASWSILREVLVVPGLVARADKEAVAAAVSLANNCPYCAEVHSTTLRGLVRGKDPEAIAAGRIEDVTD------------DRLRTLAGWAVTSAEAPG-PAPFPRAQAPELIGTVLTFQYINRMVNVFLQESPLPPVQGIARDVVRRGAARVMRRLASSAPLPG------------------------LDTDDLLPAAQ------------LPDDLRWAQ--SRPSIANALARAAGAIDEAGERRLTTAARDMVRA--ALREPGRDAGTAPWLQERLGTLPARDRPAT--------RLALLTAVSSFRITDSVVAGVRAT----GADDAALIEVTSWASLTAARHIAAR 344          
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A7K1L942_9ACTN (Carboxymuconolactone decarboxylase n=5 Tax=Actinomadura TaxID=1988 RepID=A0A7K1L942_9ACTN)

HSP 1 Score: 73.6 bits (179), Expect = 1.230e-10
Identity = 85/352 (24.15%), Postives = 132/352 (37.50%), Query Frame = 3
Query:  276 PISVSTHNPRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLPVRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADELPLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDGEKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQAMLGFRGTHAAVL-WSSFLAAQRMCQRAFAAG 1328
            P+++ +  P   AA W +  E+    G   R+ K+ +A  +S  N CP+C  +H A  PAA                      PL             W      GE+   P   +  PE++G ++ F  LNR+V+ F+    + P  P   R         PM++ +                  G+      R   +      AA     PLP  ++WAA   +  +   FA  AA A   A   V P ++  + + V+ WDG     +K W E   G  +  D            RL L+T  AS  +    ++  +A+    GT   +  W+SF AA+    R  AAG
Sbjct:   48 PVALHSPLPDVLAASWTILRESLVVPGLAGRAAKEAVAAEVSRRNTCPYCVAVHAAAAPAAT---------------------PLTG-----------WVQRGGAGES---PFPDEHAPEYIGVLVTFEYLNRMVNLFLDDSPLPPSVPGAAR--------DPMMRLL------------------GRMTRRRIRSPGVSAALLPAA-----PLPGDLAWAARTPH--VAEAFA-RAAAAFXXAGAAVPPPVRDLVRAQVAAWDGSPKGLSKGWAEEAAGALHPVDRPAG--------RLALLTAFASHQVGARDVAAFRAVRPDDGTLVGLAAWASFTAARAAGARVHAAG 322          
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A5N5EET3_9ACTN (DNA-binding protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A5N5EET3_9ACTN)

HSP 1 Score: 71.2 bits (173), Expect = 6.780e-10
Identity = 43/134 (32.09%), Postives = 62/134 (46.27%), Query Frame = 3
Query:  300 PRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQ 701
            P   A  WA+  E+    G  SR++K+L+A G+S AN+CP C   HT +  A GD      +       DPD    L  GQ+                   P P T D+ PEF+GT + F  +NR+V A + ++
Sbjct:   46 PGLMAGTWALMRESLL-SGRASRTEKELVAFGVSAANRCPFCVGAHTLLLHAGGDHELAGTLARGGRPDDPDHGRLLAWGQDMRG----------------PQPFTADEAPEFVGTALAFHFINRVVSALIDEE 162          
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A5D4JCG8_9ACTN (DNA-binding protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A5D4JCG8_9ACTN)

HSP 1 Score: 70.1 bits (170), Expect = 1.630e-9
Identity = 44/140 (31.43%), Postives = 65/140 (46.43%), Query Frame = 3
Query:  300 PRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFA---AWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIG 710
            P   A  WA+  E+    G  SR++K+L+  G+SLAN+CP C   HT +  A GD               P+ A  L  G+   +   A   AW    R    K  P   D+ PEF+G+ + F  +NRIV A + ++ + 
Sbjct:   46 PDLMAGAWALMRESLL-SGHASRTEKELVTYGVSLANRCPFCVGAHTLLLYAGGD---------------PELAGALARGERPADPGHAQLLAWGQDMR----KSAPFPADEAPEFVGSALAFHFINRIVSALIDEESVS 165          
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: UPI00110F8565 (carboxymuconolactone decarboxylase family protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI00110F8565)

HSP 1 Score: 68.9 bits (167), Expect = 4.050e-9
Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 3
Query:  285 VSTHNPRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSK 698
            V + +P      WA+  E+    G  SR+ K ++A G+SLAN+CP C   HT +  A GD     V+       DP  A  L            AWA   R GEA   P    Q PEF+GT + F  +NR+V + +++
Sbjct:   41 VLSASPPLLTGAWALLRESLLA-GRASRTDKQVVAAGVSLANRCPFCVDAHTVLLHATGDHRLAEVIARGEVPADPGHAALL------------AWAKGTRTGEAGEPPFPAAQAPEFIGTALAFHFINRVVSSLLTE 165          
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: UPI0012EA7118 (carboxymuconolactone decarboxylase family protein n=1 Tax=Streptomyces apocyni TaxID=2654677 RepID=UPI0012EA7118)

HSP 1 Score: 68.6 bits (166), Expect = 5.710e-9
Identity = 54/180 (30.00%), Postives = 79/180 (43.89%), Query Frame = 3
Query:  237 GETGFNPPVPPRNPISVSTH-------------NPRFG---------AALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRD---GEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQ 701
            G+  F  PVPP++   ++                P FG         AA WA+  E+    G   R+ K+++ALG+SLAN+CP C   HT +  A GD     ++       DP+ A                WA   RD   G A+P P    Q P +LGTV+ F  +NRI  A ++++
Sbjct:    3 GQYRFTAPVPPKSATGLNAEVFAQVAREFGIERAPTFGVLSAAPELLAATWALLRESLVA-GDAPRTGKEIVALGVSLANRCPFCVDAHTVLLHATGDHQLGELIAGGGVPDDPEQA------------RLLQWAKATRDPSGGPAEPFPA--GQAPAYLGTVLTFHFVNRIASALLTER 167          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXH5_9PHAE2.470e-17962.77CMD domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI00174AAE101.890e-1825.80carboxymuconolactone decarboxylase family protein ... [more]
A0A7W7WLP7_9ACTN6.830e-1526.79AhpD family alkylhydroperoxidase n=2 Tax=Kitasatos... [more]
A0A7Y5DLZ2_9SPHN2.700e-1426.38CMD domain-containing protein n=1 Tax=Novosphingob... [more]
A0A5C4QTY6_9ACTN4.750e-1122.99Carboxymuconolactone decarboxylase family protein ... [more]
A0A7K1L942_9ACTN1.230e-1024.15Carboxymuconolactone decarboxylase n=5 Tax=Actinom... [more]
A0A5N5EET3_9ACTN6.780e-1032.09DNA-binding protein n=2 Tax=Streptomyces TaxID=188... [more]
A0A5D4JCG8_9ACTN1.630e-931.43DNA-binding protein n=3 Tax=Streptomyces TaxID=188... [more]
UPI00110F85654.050e-933.33carboxymuconolactone decarboxylase family protein ... [more]
UPI0012EA71185.710e-930.00carboxymuconolactone decarboxylase family protein ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5877contigL-elsbetiae_contig5877:5396..10634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score90.9
Seed ortholog evalue1.6e-15
Seed eggNOG ortholog479433.Caci_5022
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
EggNOG OGs2ICI6@201174,COG2128@1,COG2128@2
COG Functional cat.S
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons8
Model size1446
Cds size1320
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5877.14341.1prot_L-elsbetiae_contig5877.14341.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5877 5467..10579 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816634.4389722-UTR-L-elsbetiae_contig5877:5395..54661622816634.4389722-UTR-L-elsbetiae_contig5877:5395..5466Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5877 5396..5466 +
1691683700.7144692-UTR-L-elsbetiae_contig5877:5395..54661691683700.7144692-UTR-L-elsbetiae_contig5877:5395..5466Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5877 5396..5466 +
1622816634.558544-UTR-L-elsbetiae_contig5877:10579..106341622816634.558544-UTR-L-elsbetiae_contig5877:10579..10634Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5877 10580..10634 +
1691683700.816584-UTR-L-elsbetiae_contig5877:10579..106341691683700.816584-UTR-L-elsbetiae_contig5877:10579..10634Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5877 10580..10634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816634.45147-CDS-L-elsbetiae_contig5877:5466..57541622816634.45147-CDS-L-elsbetiae_contig5877:5466..5754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 5467..5754 +
1691683700.7269866-CDS-L-elsbetiae_contig5877:5466..57541691683700.7269866-CDS-L-elsbetiae_contig5877:5466..5754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 5467..5754 +
1622816634.4669743-CDS-L-elsbetiae_contig5877:6694..67821622816634.4669743-CDS-L-elsbetiae_contig5877:6694..6782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 6695..6782 +
1691683700.7378824-CDS-L-elsbetiae_contig5877:6694..67821691683700.7378824-CDS-L-elsbetiae_contig5877:6694..6782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 6695..6782 +
1622816634.484312-CDS-L-elsbetiae_contig5877:7161..73311622816634.484312-CDS-L-elsbetiae_contig5877:7161..7331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 7162..7331 +
1691683700.7511227-CDS-L-elsbetiae_contig5877:7161..73311691683700.7511227-CDS-L-elsbetiae_contig5877:7161..7331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 7162..7331 +
1622816634.4970095-CDS-L-elsbetiae_contig5877:7865..79331622816634.4970095-CDS-L-elsbetiae_contig5877:7865..7933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 7866..7933 +
1691683700.7631524-CDS-L-elsbetiae_contig5877:7865..79331691683700.7631524-CDS-L-elsbetiae_contig5877:7865..7933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 7866..7933 +
1622816634.5117211-CDS-L-elsbetiae_contig5877:8308..84871622816634.5117211-CDS-L-elsbetiae_contig5877:8308..8487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 8309..8487 +
1691683700.7735555-CDS-L-elsbetiae_contig5877:8308..84871691683700.7735555-CDS-L-elsbetiae_contig5877:8308..8487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 8309..8487 +
1622816634.5270376-CDS-L-elsbetiae_contig5877:8843..90931622816634.5270376-CDS-L-elsbetiae_contig5877:8843..9093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 8844..9093 +
1691683700.781909-CDS-L-elsbetiae_contig5877:8843..90931691683700.781909-CDS-L-elsbetiae_contig5877:8843..9093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 8844..9093 +
1622816634.5376675-CDS-L-elsbetiae_contig5877:9397..95181622816634.5376675-CDS-L-elsbetiae_contig5877:9397..9518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 9398..9518 +
1691683700.7928503-CDS-L-elsbetiae_contig5877:9397..95181691683700.7928503-CDS-L-elsbetiae_contig5877:9397..9518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 9398..9518 +
1622816634.5476234-CDS-L-elsbetiae_contig5877:10423..105791622816634.5476234-CDS-L-elsbetiae_contig5877:10423..10579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 10424..10579 +
1691683700.8069582-CDS-L-elsbetiae_contig5877:10423..105791691683700.8069582-CDS-L-elsbetiae_contig5877:10423..10579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5877 10424..10579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5877.14341.1

>prot_L-elsbetiae_contig5877.14341.1 ID=prot_L-elsbetiae_contig5877.14341.1|Name=mRNA_L-elsbetiae_contig5877.14341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=440bp
MSAACVLSEHEIVLDKMTSERNHILDRWADPKALGLTSEEKALFAYQKAN
LKFLFGETGFNPPVPPRNPISVSTHNPRFGAALWAVNTEAYRRKGALSRS
QKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTA
FPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLN
RIVDAFVSKQDIGPMFPLPVRLMMRFESMTPMVQRMMAWMMSWMMHGEDK
KITAGKCLADINRVTPIVKGFEGAADELPLPLPEAMSWAATGSNEAIGTT
FAFLAAEAEILAECFVSPALKTHMESWVSMWDGEKIVPTKKWLESQVGGF
YADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQAMLGFRGTHAAV
LWSSFLAAQRMCQRAFAAGLAPVVLAPVVLAPVPPPDSD*
back to top

mRNA from alignment at L-elsbetiae_contig5877:5396..10634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5877.14341.1 ID=mRNA_L-elsbetiae_contig5877.14341.1|Name=mRNA_L-elsbetiae_contig5877.14341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5239bp|location=Sequence derived from alignment at L-elsbetiae_contig5877:5396..10634+ (Laminarionema elsbetiae ELsaHSoW15)
GACCACCCACACAATTTCACAATTGCCCTCCTCCTTGGGTCGCGAATCTC CCCACCCGACGCATCACCAACATGTCGGCGGCGTGCGTATTGTCCGAGCA CGAGATTGTGCTTGATAAGATGACGAGCGAGCGCAACCATATCCTCGATC GATGGGCTGACCCCAAGGCGCTCGGACTGACTTCGGAGGAGAAGGCTCTC TTTGCGTACCAGAAGGCGAACCTGAAGTTCCTCTTTGGCGAGACAGGATT CAACCCACCTGTGCCACCGCGCAATCCTATCTCGGTGTCTACCCACAACC CGAGGTTCGGCGCAGCGCTCTGGGCAGTCAACACTGAGGCGTATCGCCGC AAGGGGGCGGTGAGTGCATTTTTCGGTTTATTTCCTCTTCCGCTGGTCAG CAAGGATCCATGTAGGAAAATCTACTGCAGACCGCGAACGAATGTCCCGT TGGACCCAAGGCTGCACTCGGCTGTGGCCGAGGGTTTCTGGGATGTCTGG TGTAGTCATGTTGTGAATTTGATAGGAGATTTTTAGGAGCCCCTTTTTGA CGTGCGCTAGTCGACGAGCAGCAAGCAGTAAAGAACCACCTCTTAGTATC AGATTGCCGGCTGTTTGGTGTGTTCACCGCGTTTGTGTTTGGCGCACGTG AGTCCCCATCAGAATTGATTCTCTGCTTTATGGCGGTGGGCGCCAAATCG ATTCGAGAGTTTGAAGAAAGAGGCAACGAAATTGCAACCTAGTCTACAAC CAGCCAGTTCGAGATTAATTGAAGAGAGCCAGTCAAGCGTTTGCCGAATT TCGAAATTTTGCATTTTTACATCTTGGTAACGATGTGAGATGTCGGCGTG GCAGCTGCGTTTTGGTCGCCCTCGCGATACCTGGCGTGGCAGCTATCATC TTGCTCGCTCACGGGCCTTTTGCGCATTCAATGATAAAAAACGCAACACG AAAACTAAATTCGTCGCAATGTACTCGCAATGTACTCTCGCCATGCTCGG CTTGATGCTGTGTATTTTCCGCTGAATGAAGTCTCTTGGAGGCAATATCG TCTTGGGAGCGACAGCGAAACCGGCATCAACGTGCTACAATATTGTGTAC ACTCGTGCATAGTTTCGTCACGGCCGGTCTCGGCGAGAATTCTGTGTGAG CGTGTGACGAGAGAATGATATGTAGACTATATTCTTATTCTTGAAATAAA TGCACTTCGTTCGGTACAATACATGATGATGAGTGTACCGTCACTCCGCC CTTGCTCCGCTTTTTATTTCCCCGCCCCCCTGCCGTGTCCTGCACGCAGC TATCCCGCAGCCAAAAGGACTTATTGGCCCTCGGCCTCTCCCTTGCCAAC CAGTGCCCTCACTGCGCCTTCATCCACACGGCCATGGGTAAGTAGTAGTA TCTCCATGTGTATCTGTAAACCTACTATCTACTGTGTTGTGTACCCACCT GTTTGGTTCGCCTTATCCATGCGGCACGTATGAATGTAGGTGGGAGTGGG CGGTAGATGTACGTGGAGTATCCTTCCAAAACCAAAAAAAGGGCAACTAA AACTCATGCATATCTAAAGACTCTACTACTGTCCACTGATGAAGAGGCGC CGCCCCCGTCGTTTTTCGGCCGTCTGCCGCATGCATGACTTCGCCCGGTG GCTGCTGCTGTTTGGTCGTACGTATGTAGACTATTAGAATGTTTGTTGTG AACGCATCTATGGACAACGAGTGCGGTGTCGCCAACCAAGACCTTGCGGG TTGAAATTTTCTTCAGGCCCAGCGGCCGGCGACGACGTCGACATGACGGT CATGCAAAGCTTCTACGACACCCAAGACCCCGACACGGCGTTTCCGCTGG TGGCGGGGCAGAACTCCATGAACCACGAGTTCGCGGCGTGGGCAATCACT CACCGAGACGGAGAGGCTAAGCCCCTCCCCTGCACGGTGAGACGAAAACG TAAAAAAAAAAAAAAAAACTGTGCCCAGCGATAGTCTAGACGCAGCAAAC TTACAAAAAAACATACCGGTTACTACGCAGCAACACCAGGATGGTGCGCT GCTTCTAAATTTTCTCGGACCCTCGTCCGAGCGCTGGTAAACGTGAGGGT GTCCGTAAGAAAAAAAGAAATAAAACGGTGAAGCTTTTGAGAAATTTCAC CCCGAGGGAGGGACTGGGGCCAAAGACCTTGAGAAAAACAACGGGGAAGC GGCAGCATTGTACCTCCATTCGCATTCGAGCCAAACGTTGGTTCTTGAGA TCTTCACACACGCCACCCCCGGTGTCGCTCGCTGCGTCGAAACTTTAAAA CCAACCCCCCACACTCTCCGGCTTCGTCCTTTCGTGGCTTAGTGACCACG GCCTTGCATGATAACAAGTACACCCCTTCGTCCAACCTTCTGTTCTCCCC ATCCCGTCGCCCATACTGTTGTCACCGCCGCCTTTGTACCTCTCTACCAT GTGTCTTGTTTTTATGACAGCCGGACCAGGTGCCAGAATTTCTGGGGACC GTCATGCTTTTCTCGATGCTCAACCGCATCGTCGACGCGTAAGTGTGCGC ATCTGTTTCCCCAATGCGCGCCCCATGCCGGTATATTTAATGGAAAACAG AAAGAGAGGAAGTGCCAAGAGTTGGGAGGGGGCTCTCTGCTCTTGTGTGC CGTGATTCCGCCCTACATACTCGGTGGGCAAAACACTAACCCCCCATCAT GGGCCCGGCGGTTTCTAGATCAGGAACTCCTTTATGTATAGATACACCGC TTGCCCTGACCGAAAGCGGTGCACCCTCGGTGGCTGCAAAGCCAATCGTA ACTATCCCCCAGTACCACACTGCCGCTCGTCCGCCGCTCGCCCCCATTGC TGCTGTTATGACCTTGCCACCACCGCCGCCGCCGCCGCTGCTGCTGCTGC TGCTGCTTCGCAGGTTTGTCTCCAAACAAGATATAGGCCCCATGTTTCCG CTGCCCGTACGCCTCATGATGAGGTTCGAGTCTATGACCCCGATGGTGCA GCGCATGATGGCGTGGATGATGTCGTGGATGATGCACGGGGAGGACAAGA AAATCACGGCGGGGAAGTGCCTGGCAGATATCAACAGGGTGAGTGATGCG ACGGGGGGAGAGTGAGAGTGGGACCGGGTGGACCGGCCGGACGAGTTACC AGTTTCCTCGGGTTTCGGTCTTGGTTGGCTTGTTTTAGTGCGTAGGGGAA GGGAGCCGGGGGCGGGGTGAAACGCTATCCGGGGGGCACATGCCCCCACA CGGTTTTCGTCTTATGATGGCACACGAGTATTGTTCGTGATGTTGTTGTT GTTGTTGTTGTCTTCACGTTAAAAACCGTTCCGATCTCTCCACCCAGTAC CTCCCTATGTCCGTACTAATCGCGTACCCCCCCCCCTCTCTGAAAACTAC TACCATATGTGTTTTGAAATACCATGCGTGATTCGTACGAGTAGGTAGCC CCGATCGTCAAGGGCTTCGAAGGGGCCGCCGATGAGCTTCCGCTGCCGCT CCCCGAGGCGATGTCATGGGCCGCCACCGGCTCGAACGAGGCCATCGGGA CCACCTTCGCCTTCCTTGCGGCGGAGGCGGAGATCCTCGCGGAGTGCTTC GTATCGCCGGCCCTGAAGACGCACATGGAGTCGTGGGTTTCCATGTGGGA CGGAGAGAAGATCGTGCCGACGAAGAAGTGGCTGGAATCCCAGGTGGGGT GGGTGGGGTGGTGTCAAGAACCACCGGGCCGGTAGCGAAACACGTCACGT TGGCGTACAAGTGTCCCCGGGGCCGTTTCTGACGGATGTTGCGGAGTCTA CGCACGCACCCGTTTCGGTTCGACGTCTGTTAAAAGCCGAACGGTCGCAT TTCCTTTTACAAAAGTTGCCGTGAAATGATATTTGCCTTAAGAGCCTTTT TTTCTTGCCGTTCGTTCCTCTCTCGGCCGGACCATGAACTGTGAACTGCT ACTGTGTTAACTCACGTGGATTTATTTTCGTCGTTTTCAAGGTTGCCGAA AGCGGGTTCTACGCGGACGACTCGGATGTGAACGACAAAGCTGATGTGAC AATGCTGCGGTTGATGCTGGTCACCGTGGTAGCTAGCCCCGTTATCAACG ACACCTTGCTCAGCGAGTGCCAGGTAGGGACGGTGGTTGTTCTTCTGCGT GTGTGTGTGCGTGGGGGGGGGGTCAGCGTTTCGGCAGGCGTGTTTCGGGT TCGTGTGTGATGACACGAAGTACCCCAGTAGTGGTGCACCATCCTCTTGT CCCGAAGAAAATCCGCCTGAATACTTGTTGGCCGACCTCGCCAATCTTTA AATCTTTATCTTTGCAGGGGAGATGTTGAATCTTTATCTTTGCAGGGGAG ATGTTGAACTCTTCTGATATTTTAGGTCGTTTTTCTGCTCGCTTCGCCAA ATATTACGTCACTCTCTAGTGTGGGGTAGGTTCCATCTTTGATTCATTGT TTATTTTTAAAAGCAGTGCCAGCGCGGGGGCAGCAAGAAACGACTGAATA GTCACTTGACACACTCCTGGTGGTTTGCCACCAGCATGGGATGCAGAATA GGGTTGTTGACTGTCCCGATGGCCGAGGAATAGGTGGCAGCCCGTTGGCA ACAACAGCAGCAGCCCAGCCCAATCTTAGATCACGAAGCTTTTGAAGCTA CTTTGGCTGTGAAGATCCCAATGTCGCCCAGGAGGCTGGTATTTTCGCCC CCGTCTGATGTCTCGACACCGGGGCAGCCAATCATTCATTCATCCAAAAT GCCGGCAGATTGAGAACTATGTAGACCAGGAATTGGTGTGCATGATGCAT ATGCTTTTAGTCTCAATTCGGCACCCTCCTTTCCTCCCGCCACGAAGCCT GGGGGGGGGGAGGCGCACACTTTTGTAGCTTCTTGGATGTTGCTTCGCAC CCCCCTCTGCTCCCCGCGCCGATCGAACAATCACGTAACCCCCCCCCTCC CATCCCCCGACCCCCCTCTCCCCGCCTGCCACCCCCCCTGCCTGCTTGCG TACCGACGTTTTCTGAAACAAACTCAAGGCGATGCTCGGCTTCCGCGGCA CCCACGCGGCCGTCCTCTGGTCGTCGTTCCTTGCGGCCCAGCGGATGTGC CAGCGGGCGTTCGCCGCCGGCCTGGCCCCCGTTGTCCTGGCCCCCGTTGT CCTGGCCCCCGTGCCCCCCCCCGATTCTGACTAAAGCGCGCACGTCTACG CTTGCTATGGATAGCGTTCGATATGTTTTTCTTCTTGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5877:5396..10634+

>mRNA_L-elsbetiae_contig5877.14341.1 ID=mRNA_L-elsbetiae_contig5877.14341.1|Name=mRNA_L-elsbetiae_contig5877.14341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2640bp|location=Sequence derived from alignment at L-elsbetiae_contig5877:5396..10634+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCGGCGTGCGTATTGTCCGAGCACGAGATTGTGCTTGATAAGAT
GACGAGCGAGCGCAACCATATCCTCGATCGATGGGCTGACCCCAAGGCGC
TCGGACTGACTTCGGAGGAGAAGGCTCTCTTTGCGTACCAGAAGGCGAAC
CTGAAGTTCCTCTTTGGCGAGACAGGATTCAACCCACCTGTGCCACCGCG
CAATCCTATCTCGGTGTCTACCCACAACCCGAGGTTCGGCGCAGCGCTCT
GGGCAGTCAACACTGAGGCGTATCGCCGCAAGGGGGCGATGTCGGCGGCG
TGCGTATTGTCCGAGCACGAGATTGTGCTTGATAAGATGACGAGCGAGCG
CAACCATATCCTCGATCGATGGGCTGACCCCAAGGCGCTCGGACTGACTT
CGGAGGAGAAGGCTCTCTTTGCGTACCAGAAGGCGAACCTGAAGTTCCTC
TTTGGCGAGACAGGATTCAACCCACCTGTGCCACCGCGCAATCCTATCTC
GGTGTCTACCCACAACCCGAGGTTCGGCGCAGCGCTCTGGGCAGTCAACA
CTGAGGCGTATCGCCGCAAGGGGGCGCTATCCCGCAGCCAAAAGGACTTA
TTGGCCCTCGGCCTCTCCCTTGCCAACCAGTGCCCTCACTGCGCCTTCAT
CCACACGGCCATGGCTATCCCGCAGCCAAAAGGACTTATTGGCCCTCGGC
CTCTCCCTTGCCAACCAGTGCCCTCACTGCGCCTTCATCCACACGGCCAT
GGGCCCAGCGGCCGGCGACGACGTCGACATGACGGTCATGCAAAGCTTCT
ACGACACCCAAGACCCCGACACGGCGTTTCCGCTGGTGGCGGGGCAGAAC
TCCATGAACCACGAGTTCGCGGCGTGGGCAATCACTCACCGAGACGGAGA
GGCTAAGCCCCTCCCCTGCACGGCCCAGCGGCCGGCGACGACGTCGACAT
GACGGTCATGCAAAGCTTCTACGACACCCAAGACCCCGACACGGCGTTTC
CGCTGGTGGCGGGGCAGAACTCCATGAACCACGAGTTCGCGGCGTGGGCA
ATCACTCACCGAGACGGAGAGGCTAAGCCCCTCCCCTGCACGCCGGACCA
GGTGCCAGAATTTCTGGGGACCGTCATGCTTTTCTCGATGCTCAACCGCA
TCGTCGACGCCCGGACCAGGTGCCAGAATTTCTGGGGACCGTCATGCTTT
TCTCGATGCTCAACCGCATCGTCGACGCGTTTGTCTCCAAACAAGATATA
GGCCCCATGTTTCCGCTGCCCGTACGCCTCATGATGAGGTTCGAGTCTAT
GACCCCGATGGTGCAGCGCATGATGGCGTGGATGATGTCGTGGATGATGC
ACGGGGAGGACAAGAAAATCACGGCGGGGAAGTGCCTGGCAGATATCAAC
AGGGTGAGTTTGTCTCCAAACAAGATATAGGCCCCATGTTTCCGCTGCCC
GTACGCCTCATGATGAGGTTCGAGTCTATGACCCCGATGGTGCAGCGCAT
GATGGCGTGGATGATGTCGTGGATGATGCACGGGGAGGACAAGAAAATCA
CGGCGGGGAAGTGCCTGGCAGATATCAACAGGGTGACCCCGATCGTCAAG
GGCTTCGAAGGGGCCGCCGATGAGCTTCCGCTGCCGCTCCCCGAGGCGAT
GTCATGGGCCGCCACCGGCTCGAACGAGGCCATCGGGACCACCTTCGCCT
TCCTTGCGGCGGAGGCGGAGATCCTCGCGGAGTGCTTCGTATCGCCGGCC
CTGAAGACGCACATGGAGTCGTGGGTTTCCATGTGGGACGGAGAGAAGAT
CGTGCCGACGAAGAAGTGGCTGGAATCCCAGGTGGGCCCCGATCGTCAAG
GGCTTCGAAGGGGCCGCCGATGAGCTTCCGCTGCCGCTCCCCGAGGCGAT
GTCATGGGCCGCCACCGGCTCGAACGAGGCCATCGGGACCACCTTCGCCT
TCCTTGCGGCGGAGGCGGAGATCCTCGCGGAGTGCTTCGTATCGCCGGCC
CTGAAGACGCACATGGAGTCGTGGGTTTCCATGTGGGACGGAGAGAAGAT
CGTGCCGACGAAGAAGTGGCTGGAATCCCAGGTGGGCGGGTTCTACGCGG
ACGACTCGGATGTGAACGACAAAGCTGATGTGACAATGCTGCGGTTGATG
CTGGTCACCGTGGTAGCTAGCCCCGTTATCAACGACACCTTGCTCAGCGA
GTGCCAGCGGGTTCTACGCGGACGACTCGGATGTGAACGACAAAGCTGAT
GTGACAATGCTGCGGTTGATGCTGGTCACCGTGGTAGCTAGCCCCGTTAT
CAACGACACCTTGCTCAGCGAGTGCCAGGCGATGCTCGGCTTCCGCGGCA
CCCACGCGGCCGTCCTCTGGTCGTCGTTCCTTGCGGCCCAGCGGATGTGC
CAGCGGGCGTTCGCCGCCGGCCTGGCCCCCGTTGTCCTGGCCCCCGTTGT
CCTGGCCCCCGTGCCCCCCCCCGATTCTGACTAAGCGATGCTCGGCTTCC
GCGGCACCCACGCGGCCGTCCTCTGGTCGTCGTTCCTTGCGGCCCAGCGG
ATGTGCCAGCGGGCGTTCGCCGCCGGCCTGGCCCCCGTTGTCCTGGCCCC
CGTTGTCCTGGCCCCCGTGCCCCCCCCCGATTCTGACTAA
back to top