mRNA_L-elsbetiae_contig5877.14341.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A6H5KXH5_9PHAE (CMD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXH5_9PHAE) HSP 1 Score: 518 bits (1333), Expect = 2.470e-179 Identity = 263/419 (62.77%), Postives = 313/419 (74.70%), Query Frame = 3 Query: 75 SAACVLSEHEIVLDKMTSERNHILDRWADPKALGLTSEEKALFAYQKANLKFLFGETGFNPPVPPRNPISVSTHNPRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSM-NHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLPVRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADELPLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDG--EKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQAMLGFRGTHAAVLWSSFLAAQRMCQRAFA 1322 S A + + IVL K TSER+ ILD WAD +AL LT EE L YQ+ NLK LFGETGFNPPVP RNPISV+ HNPRF AALWAVNTEAYRRKG LSRSQK+++ALG+SL+N CPHCA+IHTAMGPAAGDDVD ++ FY TQD D AFP+ GQ+ M N+ A+W+I HRDG+ + PCTP+Q+PE +GT MLF +LNR+VD FVSK + GPMFPLP+R+MM+ + TP++QR M+WM MMHGED K+ AGK L +IN V PI+KGF G ADE P+ LPE +SWA TG +E I FAFLAAEAE+LA FV PA+K+ ESWVS WDG +I ++WL V A DK DV MLRLMLVT+VAS +DTLLSECQA+ GFRGTHAAVLWS+FLA QR CQ A A Sbjct: 5 STAAAMDQEAIVLRKETSERDRILDNWADAEALQLTDEEANLNEYQRKNLKLLFGETGFNPPVPARNPISVTMHNPRFSAALWAVNTEAYRRKGLLSRSQKEVIALGVSLSNGCPHCAYIHTAMGPAAGDDVDFDSLRLFYQTQDADAAFPVGEGQDPMSNNTLASWSIRHRDGKEQAAPCTPEQLPEVVGTAMLFDILNRVVDTFVSKTEAGPMFPLPMRMMMKVQPATPLLQRAMSWMMSWMMHGEDVKVEAGKVLKEINEVHPIIKGFRGCADETPMALPEQLSWA-TGGDETIAAAFAFLAAEAELLAHAFVPPAVKSFTESWVSSWDGGAAQIGELEEWLGPTVR-VTASGLGEGDKGDVVMLRLMLVTIVASHRTDDTLLSECQAIHGFRGTHAAVLWSAFLAGQRSCQLAIA 421
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: UPI00174AAE10 (carboxymuconolactone decarboxylase family protein n=2 Tax=Kitasatospora TaxID=2063 RepID=UPI00174AAE10) HSP 1 Score: 97.1 bits (240), Expect = 1.890e-18 Identity = 89/345 (25.80%), Postives = 140/345 (40.58%), Query Frame = 3 Query: 285 VSTHNPRFG--AALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLPVRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADELPLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDGEKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQAMLGFRGTHAAV---LWSSFLAAQRM 1304 ++ H+P G AA W + E +GA R K+ +A +S+AN+CP C +HTA V+ S P A AG+ E+A A P P Q+PE LGTV++ LNR+V+ F+ + P P ES V R++ W+ E + LA P PLP ++WA N I + FA AA E V A++ + ++ WDG + W + V + RL+L+T +AS +++T++++ + G G A V W+S AA+++ Sbjct: 51 IALHSPATGPLAASWLMLRETMLVEGAAPRPAKEAVACAVSVANECPFCERMHTA------------VLHSLT----PGRATDCGAGRFDEVTEWARLGAVRDTAAANPRPFPSGQLPELLGTVVIMQYLNRMVNVFLGGVPLPPGAP---------ESSLRPVLRVLTWLIRSSARSEPAPGVSLDLLA-------------------PAPLPADLAWAE--GNPVIASAFARAAAAVEEAGRADVPKAVQELLHDTLARWDGRPPGLGRGWADQAVAALVPQERPA--------ARLVLLTALASYTVDETVIADFRRAAGEPGDRALVGLTAWASLTAARQV 341
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A7W7WLP7_9ACTN (AhpD family alkylhydroperoxidase n=2 Tax=Kitasatospora gansuensis TaxID=258050 RepID=A0A7W7WLP7_9ACTN) HSP 1 Score: 86.7 bits (213), Expect = 6.830e-15 Identity = 86/321 (26.79%), Postives = 136/321 (42.37%), Query Frame = 3 Query: 285 VSTHNPRFG--AALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKP-LPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLPVRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADELPLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDGEKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQA 1238 ++ H+P FG AA W + E G +R+ K+ +A +S+AN+CP C +H+AM + D ++ Q D A VA + A RD AK P +QVPE LG+V++ LNR+V+ F+ + P P ES V +++ W+ E K AG L G AA LP ++WAA SN I FA AA E+ + ++ + V WDG + W ++ V A++ RL L+T +A+ +++T++ +A Sbjct: 51 IALHSPAFGPLAASWLMLREPMLVAGVAARTTKEAVAAAVSVANECPFCIRMHSAMLHSLAPGKDSAAIREGRLDQVADPAVRAVA---DWVRDGAV-----RDTAAKTRFPFAAEQVPELLGSVVIMHYLNRMVNVFLGAMPLPPGAP---------ESSLRPVMKVLTWLLRSAARAEPK---AGGTL-----------GLLPAA-----ALPADLAWAA--SNPQIAAAFARAAAAVELAGRAALPDGVRELVLDTVDAWDGRPPGLGRGWADAAVETRPAEERPA--------ARLALLTALAAYTVDETVVDAARA 325
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A7Y5DLZ2_9SPHN (CMD domain-containing protein n=1 Tax=Novosphingobium sp. TaxID=1874826 RepID=A0A7Y5DLZ2_9SPHN) HSP 1 Score: 84.7 bits (208), Expect = 2.700e-14 Identity = 91/345 (26.38%), Postives = 140/345 (40.58%), Query Frame = 3 Query: 276 PISVSTHNPRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTP---DQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLPVRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADEL--PLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDGEKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQAML-GFRGTHAAVLWSSFLA 1292 P+++ + P A W+ EA+ R+ ++ +A G+SLAN+CP+C +HTAM A+GD ++S AG + ++ AWA R A L P VP+ LGT +LF +NR+V F+S+ PLP+R S P +K+ + R + GA+ L PLP WAA ++ AI A L A E V ++ + V +W GE + + +WL V ADD + RL L T +A+ ++ L++ + G A WSS A Sbjct: 43 PLTIHSACPEILAGAWSAMREAFVVDPD-HRALREAVASGVSLANRCPYCVDVHTAMLDASGDHALADRIRS--------------AGAD--DNALIAWASATRQCGAPALEAPPFAKQLVPQLLGTAVLFHYINRLVSVFLSESAA----PLPLR------SALP------------------RKLFGRAFGGTVGRHLLAARAEPGASLHLLPDAPLPREFVWAA--ADRAIAGGLARLDAAVEAAGALHVPEPVRALVAQRVGIWRGEDVPLSDRWLAEAVSELAADDQRAS-------ARLALQTALAAYRVDGALIAAFRRHFPGDAPLLATAAWSSLTA 333
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A5C4QTY6_9ACTN (Carboxymuconolactone decarboxylase family protein n=1 Tax=Micromonospora orduensis TaxID=1420891 RepID=A0A5C4QTY6_9ACTN) HSP 1 Score: 75.1 bits (183), Expect = 4.750e-11 Identity = 83/361 (22.99%), Postives = 141/361 (39.06%), Query Frame = 3 Query: 276 PISVSTHNPRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIH--TAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLP--------VRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADELPLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDGEKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQAMLGFRGTHAAVL-----WSSFLAAQRMCQR 1313 P+++ + P AA W++ E G ++R+ K+ +A +SLAN CP+CA +H T G G D + D D A WA+T + P P Q PE +GTV+ F +NR+V+ F+ + + P+ + R+M R S P+ D + + P + LP+ + WA S +I A A + E ++ A + + + ++ + + T WL+ ++G A D RL L+T V+S I D++++ +A G A L W+S AA+ + R Sbjct: 49 PLALHSPAPSVLAASWSILREVLVVPGLVARADKEAVAAAVSLANNCPYCAEVHSTTLRGLVRGKDPEAIAAGRIEDVTD------------DRLRTLAGWAVTSAEAPG-PAPFPRAQAPELIGTVLTFQYINRMVNVFLQESPLPPVQGIARDVVRRGAARVMRRLASSAPLPG------------------------LDTDDLLPAAQ------------LPDDLRWAQ--SRPSIANALARAAGAIDEAGERRLTTAARDMVRA--ALREPGRDAGTAPWLQERLGTLPARDRPAT--------RLALLTAVSSFRITDSVVAGVRAT----GADDAALIEVTSWASLTAARHIAAR 344
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A7K1L942_9ACTN (Carboxymuconolactone decarboxylase n=5 Tax=Actinomadura TaxID=1988 RepID=A0A7K1L942_9ACTN) HSP 1 Score: 73.6 bits (179), Expect = 1.230e-10 Identity = 85/352 (24.15%), Postives = 132/352 (37.50%), Query Frame = 3 Query: 276 PISVSTHNPRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIGPMFPLPVRLMMRFESMTPMVQRMMAWMXXXMMHGEDKKITAGKCLADINRVTPIVKGFEGAADELPLPLPEAMSWAATGSNEAIGTTFAFLAAEAEILAECFVSPALKTHMESWVSMWDGEKIVPTKKWLESQVGGFYADDSDVNDKADVTMLRLMLVTVVASPVINDTLLSECQAMLGFRGTHAAVL-WSSFLAAQRMCQRAFAAG 1328 P+++ + P AA W + E+ G R+ K+ +A +S N CP+C +H A PAA PL W GE+ P + PE++G ++ F LNR+V+ F+ + P P R PM++ + G+ R + AA PLP ++WAA + + FA AA A A V P ++ + + V+ WDG +K W E G + D RL L+T AS + ++ +A+ GT + W+SF AA+ R AAG Sbjct: 48 PVALHSPLPDVLAASWTILRESLVVPGLAGRAAKEAVAAEVSRRNTCPYCVAVHAAAAPAAT---------------------PLTG-----------WVQRGGAGES---PFPDEHAPEYIGVLVTFEYLNRMVNLFLDDSPLPPSVPGAAR--------DPMMRLL------------------GRMTRRRIRSPGVSAALLPAA-----PLPGDLAWAARTPH--VAEAFA-RAAAAFXXAGAAVPPPVRDLVRAQVAAWDGSPKGLSKGWAEEAAGALHPVDRPAG--------RLALLTAFASHQVGARDVAAFRAVRPDDGTLVGLAAWASFTAARAAGARVHAAG 322
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A5N5EET3_9ACTN (DNA-binding protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A5N5EET3_9ACTN) HSP 1 Score: 71.2 bits (173), Expect = 6.780e-10 Identity = 43/134 (32.09%), Postives = 62/134 (46.27%), Query Frame = 3 Query: 300 PRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQ 701 P A WA+ E+ G SR++K+L+A G+S AN+CP C HT + A GD + DPD L GQ+ P P T D+ PEF+GT + F +NR+V A + ++ Sbjct: 46 PGLMAGTWALMRESLL-SGRASRTEKELVAFGVSAANRCPFCVGAHTLLLHAGGDHELAGTLARGGRPDDPDHGRLLAWGQDMRG----------------PQPFTADEAPEFVGTALAFHFINRVVSALIDEE 162
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: A0A5D4JCG8_9ACTN (DNA-binding protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A5D4JCG8_9ACTN) HSP 1 Score: 70.1 bits (170), Expect = 1.630e-9 Identity = 44/140 (31.43%), Postives = 65/140 (46.43%), Query Frame = 3 Query: 300 PRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFA---AWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQDIG 710 P A WA+ E+ G SR++K+L+ G+SLAN+CP C HT + A GD P+ A L G+ + A AW R K P D+ PEF+G+ + F +NRIV A + ++ + Sbjct: 46 PDLMAGAWALMRESLL-SGHASRTEKELVTYGVSLANRCPFCVGAHTLLLYAGGD---------------PELAGALARGERPADPGHAQLLAWGQDMR----KSAPFPADEAPEFVGSALAFHFINRIVSALIDEESVS 165
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: UPI00110F8565 (carboxymuconolactone decarboxylase family protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI00110F8565) HSP 1 Score: 68.9 bits (167), Expect = 4.050e-9 Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 3 Query: 285 VSTHNPRFGAALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRDGEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSK 698 V + +P WA+ E+ G SR+ K ++A G+SLAN+CP C HT + A GD V+ DP A L AWA R GEA P Q PEF+GT + F +NR+V + +++ Sbjct: 41 VLSASPPLLTGAWALLRESLLA-GRASRTDKQVVAAGVSLANRCPFCVDAHTVLLHATGDHRLAEVIARGEVPADPGHAALL------------AWAKGTRTGEAGEPPFPAAQAPEFIGTALAFHFINRVVSSLLTE 165
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Match: UPI0012EA7118 (carboxymuconolactone decarboxylase family protein n=1 Tax=Streptomyces apocyni TaxID=2654677 RepID=UPI0012EA7118) HSP 1 Score: 68.6 bits (166), Expect = 5.710e-9 Identity = 54/180 (30.00%), Postives = 79/180 (43.89%), Query Frame = 3 Query: 237 GETGFNPPVPPRNPISVSTH-------------NPRFG---------AALWAVNTEAYRRKGALSRSQKDLLALGLSLANQCPHCAFIHTAMGPAAGDDVDMTVMQSFYDTQDPDTAFPLVAGQNSMNHEFAAWAITHRD---GEAKPLPCTPDQVPEFLGTVMLFSMLNRIVDAFVSKQ 701 G+ F PVPP++ ++ P FG AA WA+ E+ G R+ K+++ALG+SLAN+CP C HT + A GD ++ DP+ A WA RD G A+P P Q P +LGTV+ F +NRI A ++++ Sbjct: 3 GQYRFTAPVPPKSATGLNAEVFAQVAREFGIERAPTFGVLSAAPELLAATWALLRESLVA-GDAPRTGKEIVALGVSLANRCPFCVDAHTVLLHATGDHQLGELIAGGGVPDDPEQA------------RLLQWAKATRDPSGGPAEPFPA--GQAPAYLGTVLTFHFVNRIASALLTER 167 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5877.14341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5877.14341.1 >prot_L-elsbetiae_contig5877.14341.1 ID=prot_L-elsbetiae_contig5877.14341.1|Name=mRNA_L-elsbetiae_contig5877.14341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=440bp MSAACVLSEHEIVLDKMTSERNHILDRWADPKALGLTSEEKALFAYQKANback to top mRNA from alignment at L-elsbetiae_contig5877:5396..10634+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5877.14341.1 ID=mRNA_L-elsbetiae_contig5877.14341.1|Name=mRNA_L-elsbetiae_contig5877.14341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5239bp|location=Sequence derived from alignment at L-elsbetiae_contig5877:5396..10634+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5877:5396..10634+ >mRNA_L-elsbetiae_contig5877.14341.1 ID=mRNA_L-elsbetiae_contig5877.14341.1|Name=mRNA_L-elsbetiae_contig5877.14341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2640bp|location=Sequence derived from alignment at L-elsbetiae_contig5877:5396..10634+ (Laminarionema elsbetiae ELsaHSoW15)back to top |