mRNA_L-elsbetiae_contig5863.14328.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5863.14328.1
Unique NamemRNA_L-elsbetiae_contig5863.14328.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5863.14328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5863contigL-elsbetiae_contig5863:1113..1591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size352
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5863.14328.1prot_L-elsbetiae_contig5863.14328.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5863 1117..1591 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.1249886-UTR-L-elsbetiae_contig5863:1112..11161622816633.1249886-UTR-L-elsbetiae_contig5863:1112..1116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5863 1113..1116 +
1691683699.7263033-UTR-L-elsbetiae_contig5863:1112..11161691683699.7263033-UTR-L-elsbetiae_contig5863:1112..1116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5863 1113..1116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.1429615-CDS-L-elsbetiae_contig5863:1116..11501622816633.1429615-CDS-L-elsbetiae_contig5863:1116..1150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5863 1117..1150 +
1691683699.7358782-CDS-L-elsbetiae_contig5863:1116..11501691683699.7358782-CDS-L-elsbetiae_contig5863:1116..1150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5863 1117..1150 +
1622816633.1534474-CDS-L-elsbetiae_contig5863:1277..15911622816633.1534474-CDS-L-elsbetiae_contig5863:1277..1591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5863 1278..1591 +
1691683699.7473161-CDS-L-elsbetiae_contig5863:1277..15911691683699.7473161-CDS-L-elsbetiae_contig5863:1277..1591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5863 1278..1591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5863.14328.1

>prot_L-elsbetiae_contig5863.14328.1 ID=prot_L-elsbetiae_contig5863.14328.1|Name=mRNA_L-elsbetiae_contig5863.14328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MQLGPTLQALAGGENTSANTAWNRSNTASLAVPDAKMIQGLLSLLDSGND
KTNTKSMPCLRMTFPRPGGRVSGGVVPFFGEVVLGAALTGRLDGTQFNRM
QSQGAELLHAQQRRLH
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mRNA from alignment at L-elsbetiae_contig5863:1113..1591+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5863.14328.1 ID=mRNA_L-elsbetiae_contig5863.14328.1|Name=mRNA_L-elsbetiae_contig5863.14328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=479bp|location=Sequence derived from alignment at L-elsbetiae_contig5863:1113..1591+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGATGCAGCTGGGGCCGACCCTGCAGGCTCTTGCTGGTCAGAAATAGT
ACTGTTATCGACGCGAGCAATCGCAGCCGCCACCGACAATCCCATCTGAA
GCCCTCTTCTGTGCCAACCGCAACCACACTACCCTGAAAAAATCCCCCCC
CATCATCGTTTTCAGGTGGAGAAAATACGTCAGCAAATACGGCATGGAAT
CGTTCCAACACGGCTTCGTTGGCGGTCCCTGACGCCAAAATGATCCAGGG
TCTTCTGTCTCTGCTCGACAGCGGGAACGACAAAACGAATACCAAGAGTA
TGCCTTGCCTGCGTATGACGTTTCCGAGGCCAGGAGGGCGCGTAAGCGGC
GGTGTTGTACCCTTCTTTGGGGAGGTCGTGCTTGGAGCGGCACTGACGGG
AAGGCTGGATGGAACACAATTCAACCGTATGCAGAGTCAAGGAGCGGAGC
TTTTACATGCACAACAACGACGGCTTCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5863:1113..1591+

>mRNA_L-elsbetiae_contig5863.14328.1 ID=mRNA_L-elsbetiae_contig5863.14328.1|Name=mRNA_L-elsbetiae_contig5863.14328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig5863:1113..1591+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCTGGGGCCGACCCTGCAGGCTCTTGCTGATGCAGCTGGGGCCGA
CCCTGCAGGCTCTTGCTGGTGGAGAAAATACGTCAGCAAATACGGCATGG
AATCGTTCCAACACGGCTTCGTTGGCGGTCCCTGACGCCAAAATGATCCA
GGGTCTTCTGTCTCTGCTCGACAGCGGGAACGACAAAACGAATACCAAGA
GTATGCCTTGCCTGCGTATGACGTTTCCGAGGCCAGGAGGGCGCGTAAGC
GGCGGTGTTGTACCCTTCTTTGGGGAGGTCGTGCTTGGAGCGGCACTGAC
GGGAAGGCTGGATGGAACACAATTCAACCGTATGCAGAGTCAAGGAGCGG
AGCTTTTACATGCACAACAACGACGGCTTCACGTGGAGAAAATACGTCAG
CAAATACGGCATGGAATCGTTCCAACACGGCTTCGTTGGCGGTCCCTGAC
GCCAAAATGATCCAGGGTCTTCTGTCTCTGCTCGACAGCGGGAACGACAA
AACGAATACCAAGAGTATGCCTTGCCTGCGTATGACGTTTCCGAGGCCAG
GAGGGCGCGTAAGCGGCGGTGTTGTACCCTTCTTTGGGGAGGTCGTGCTT
GGAGCGGCACTGACGGGAAGGCTGGATGGAACACAATTCAACCGTATGCA
GAGTCAAGGAGCGGAGCTTTTACATGCACAACAACGACGGCTTCAC
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