mRNA_L-elsbetiae_contig5858.14318.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5858.14318.1
Unique NamemRNA_L-elsbetiae_contig5858.14318.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5858.14318.1 vs. uniprot
Match: A0A6H5J7G6_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7G6_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.230e-43
Identity = 78/85 (91.76%), Postives = 82/85 (96.47%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTFLPGCPYLAAALVCLAALVLSYDLPDTID 255
            SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDT LPGCPYL AA+VCLAAL+LSY++PD ID
Sbjct:  352 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTLLPGCPYLIAAVVCLAALLLSYEIPDAID 436          
BLAST of mRNA_L-elsbetiae_contig5858.14318.1 vs. uniprot
Match: A0A836CJ60_9STRA (Hippocampus abundant transcript 1 protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ60_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.340e-25
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTFLPGCPYLAAALVCLAALVLSYDLPDTID 255
            SLLSNLVYP++SSL+SRSV+T+ QGEVLG INGVRALTEGFGPL+F  L    E T LPG PYL A  V + ALV S+ +PD  D
Sbjct:  348 SLLSNLVYPAMSSLVSRSVSTAAQGEVLGTINGVRALTEGFGPLIFGALMSQFEGTLLPGAPYLIAGGVSVGALVYSFGIPDETD 432          
BLAST of mRNA_L-elsbetiae_contig5858.14318.1 vs. uniprot
Match: A0A4D9D9X9_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9X9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 8.660e-22
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTFLPGCPYLAAALVCLAALVLSYDLPD 246
            S L+NLVYP++SSL+SRSV  SKQGE LGA+NG+RALTEGFGPLLF  L +  +DT  PG PYL A+   +AAL+ +  LP 
Sbjct:  378 STLANLVYPAVSSLVSRSVPPSKQGEALGAMNGIRALTEGFGPLLFGSLMFLCQDTRAPGAPYLLASACSVAALLQTNKLPS 459          
BLAST of mRNA_L-elsbetiae_contig5858.14318.1 vs. uniprot
Match: A0A6V3A0Z0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3A0Z0_HETAK)

HSP 1 Score: 96.7 bits (239), Expect = 1.220e-21
Identity = 51/85 (60.00%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTFLPGCPYLAAALVCLAALVLSYDLPDTID 255
            S+ SNLVYPS+SSL+SR V   +QGE LGA+NGV+ALTEGFGPLLF  L    E T +PG PYL AA     ALV S+ LP+  D
Sbjct:  339 SVFSNLVYPSLSSLVSRGVGAGRQGEALGALNGVKALTEGFGPLLFGHLLAAFEGTVVPGAPYLVAAAFAAGALVTSFALPEDPD 423          
BLAST of mRNA_L-elsbetiae_contig5858.14318.1 vs. uniprot
Match: A0A7S2XVJ1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.340e-21
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTFLPGCPYLAAALVCLAALVLSYDLPD 246
            S+LSNLVYP++SS++SR V  ++ G  LGA+NGV+ALTEGFGPL F  L +  EDT LPG PYL AA+  + AL+ SY L +
Sbjct:  141 SVLSNLVYPALSSMVSRGVGPNQVGVALGAMNGVKALTEGFGPLCFGALLFQFEDTRLPGAPYLIAAMFAIGALLASYSLKE 222          
BLAST of mRNA_L-elsbetiae_contig5858.14318.1 vs. uniprot
Match: A0A7S2SCZ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCZ5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.870e-21
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTFLPGCPYLAAALVCLAALVLSYDLPD 246
            SL SNLVYPS+ SL+SR+V   KQG   G+INGV+ALTEGFGPL F  L    EDT LPG PYL    + L A+ +++ +P 
Sbjct:   15 SLFSNLVYPSLCSLVSRNVPADKQGAAQGSINGVKALTEGFGPLAFGLLMNVFEDTALPGAPYLIGGFITLLAVAVTFRIPS 96          
BLAST of mRNA_L-elsbetiae_contig5858.14318.1 vs. uniprot
Match: A0A836CPP9_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPP9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.000e-19
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    7 LSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTFLPGCPYLAAALVCLAAL 222
            LSNL YPS+SSL+S+SV+   QGEVLG INGVRALTEGFGPL+F  L  Y E + LPG PYL A+ V +AAL
Sbjct:  413 LSNLFYPSMSSLVSKSVSLEAQGEVLGTINGVRALTEGFGPLVFGALMSYFETSALPGAPYLIASAVGVAAL 484          
BLAST of mRNA_L-elsbetiae_contig5858.14318.1 vs. uniprot
Match: A0A6U3VK78_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VK78_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.830e-19
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTFLPGCPYLAAALVCLAALVLSYDLPDTID 255
            S LS+LVYPS++SL+S +V   K GE LGA+NG+++LTEGFGPL F  L   +E++ LPG PYL AALV   A   S  LP   D
Sbjct:   38 STLSHLVYPSLASLVSTTVPPEKVGEALGAVNGIKSLTEGFGPLCFGVLMTLSEESVLPGWPYLLAALVAYGAYKRSLLLPTEDD 122          
BLAST of mRNA_L-elsbetiae_contig5858.14318.1 vs. uniprot
Match: A0A1Z5JPM2_FISSO (MFS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPM2_FISSO)

HSP 1 Score: 87.0 bits (214), Expect = 4.030e-18
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTFLPGCPYLAAALVCLAALVLSYDLPD 246
            SLL NLVYPS+SSL+S SV     GE LGAING++ALTEG GPL+F  L   +E + LPG PYL A+L+  AA  ++ +LPD
Sbjct:  400 SLLGNLVYPSLSSLVSGSVEPDAVGEALGAINGIKALTEGIGPLVFGSLMTLSEASPLPGWPYLLASLLVFAAYRVADELPD 481          
BLAST of mRNA_L-elsbetiae_contig5858.14318.1 vs. uniprot
Match: A0A8J2S4T1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4T1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.420e-17
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLFWYTEDTFLPGCPYLAAALVCLAALVLSYDLPD 246
            SL+SNLVYP++S+L++R    ++ GE LGA+NGV+ALTEG GPL F  +    E T LPG PYLA A + L A  LS+ LPD
Sbjct:  314 SLVSNLVYPALSALVARRAEATEVGEALGALNGVKALTEGVGPLGFGLVMVEFERTALPGLPYLACAALALLAWALSHRLPD 395          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5858.14318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7G6_9PHAE1.230e-4391.76MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CJ60_9STRA4.340e-2565.88Hippocampus abundant transcript 1 protein (Fragmen... [more]
A0A4D9D9X9_9STRA8.660e-2260.98MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6V3A0Z0_HETAK1.220e-2160.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XVJ1_9STRA1.340e-2157.32Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S2SCZ5_9STRA8.870e-2154.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CPP9_9STRA1.000e-1966.67Major facilitator superfamily domain-containing pr... [more]
A0A6U3VK78_9STRA5.830e-1954.12Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5JPM2_FISSO4.030e-1857.32MFS domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A8J2S4T1_9STRA2.420e-1754.88Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5858contigL-elsbetiae_contig5858:113..367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue5.5e-37
Seed eggNOG ortholog2880.D7FX29
Preferred nameHIAT1
KEGG koko:K10393
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.folate import across plasma membrane
EggNOG OGsKOG2816@1,KOG2816@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.162218-CDS-L-elsbetiae_contig5858:112..3671622816632.162218-CDS-L-elsbetiae_contig5858:112..367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5858 113..367 +
1691683699.0375254-CDS-L-elsbetiae_contig5858:112..3671691683699.0375254-CDS-L-elsbetiae_contig5858:112..367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5858 113..367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5858.14318.1prot_L-elsbetiae_contig5858.14318.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5858 113..367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5858.14318.1

>prot_L-elsbetiae_contig5858.14318.1 ID=prot_L-elsbetiae_contig5858.14318.1|Name=mRNA_L-elsbetiae_contig5858.14318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
SLLSNLVYPSISSLISRSVATSKQGEVLGAINGVRALTEGFGPLLFSCLF
WYTEDTFLPGCPYLAAALVCLAALVLSYDLPDTID
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mRNA from alignment at L-elsbetiae_contig5858:113..367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5858.14318.1 ID=mRNA_L-elsbetiae_contig5858.14318.1|Name=mRNA_L-elsbetiae_contig5858.14318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=255bp|location=Sequence derived from alignment at L-elsbetiae_contig5858:113..367+ (Laminarionema elsbetiae ELsaHSoW15)
TCTTTACTGAGCAACCTGGTGTACCCGTCTATCTCAAGCCTCATCTCGAG GTCGGTGGCCACCTCCAAGCAGGGGGAGGTGCTGGGGGCCATCAACGGCG TGCGCGCGCTGACGGAGGGGTTCGGCCCCCTGCTCTTCTCCTGCCTCTTC TGGTACACGGAGGACACCTTTCTGCCGGGGTGCCCGTACCTCGCCGCGGC GCTGGTGTGCCTCGCCGCGCTGGTGCTGTCTTACGACCTCCCAGACACGA TCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5858:113..367+

>mRNA_L-elsbetiae_contig5858.14318.1 ID=mRNA_L-elsbetiae_contig5858.14318.1|Name=mRNA_L-elsbetiae_contig5858.14318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig5858:113..367+ (Laminarionema elsbetiae ELsaHSoW15)
TCTTTACTGAGCAACCTGGTGTACCCGTCTATCTCAAGCCTCATCTCGAG
GTCGGTGGCCACCTCCAAGCAGGGGGAGGTGCTGGGGGCCATCAACGGCG
TGCGCGCGCTGACGGAGGGGTTCGGCCCCCTGCTCTTCTCCTGCCTCTTC
TGGTACACGGAGGACACCTTTCTGCCGGGGTGCCCGTACCTCGCCGCGGC
GCTGGTGTGCCTCGCCGCGCTGGTGCTGTCTTACGACCTCCCAGACACGA
TCGACTCTTTACTGAGCAACCTGGTGTACCCGTCTATCTCAAGCCTCATC
TCGAGGTCGGTGGCCACCTCCAAGCAGGGGGAGGTGCTGGGGGCCATCAA
CGGCGTGCGCGCGCTGACGGAGGGGTTCGGCCCCCTGCTCTTCTCCTGCC
TCTTCTGGTACACGGAGGACACCTTTCTGCCGGGGTGCCCGTACCTCGCC
GCGGCGCTGGTGTGCCTCGCCGCGCTGGTGCTGTCTTACGACCTCCCAGA
CACGATCGAC
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