mRNA_L-elsbetiae_contig5854.14313.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5854.14313.1
Unique NamemRNA_L-elsbetiae_contig5854.14313.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5854.14313.1 vs. uniprot
Match: D7FZW9_ECTSI (Vacuolar protein sorting-associated protein 29 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZW9_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 5.600e-133
Identity = 182/188 (96.81%), Postives = 187/188 (99.47%), Query Frame = 2 
Query:   59 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADILVSGHTHRNQVNEFGGRWFINPGSITGAYSALESEAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKA 622
            MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEEST+FPE+KVVQIGQFRVGLTHGHQIVPWGDPNALAM QRQLGADIL+SGHTHRNQVNEFGGRWFINPGSITGAYSA+ES+AVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKA
Sbjct:    1 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTTFPETKVVQIGQFRVGLTHGHQIVPWGDPNALAMTQRQLGADILISGHTHRNQVNEFGGRWFINPGSITGAYSAVESDAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKA 188
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BLAST of mRNA_L-elsbetiae_contig5854.14313.1 vs. uniprot
Match: A0A7S2BTX2_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BTX2_9STRA)

HSP 1 Score: 308 bits (788), Expect = 1.700e-104
Identity = 141/188 (75.00%), Postives = 168/188 (89.36%), Query Frame = 2 
Query:   59 MAG-DFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADILVSGHTHRNQVNEFGGRWFINPGSITGAYSALESEAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSK 619
            MAG DFGEL LV+GD HIPHR A IPEKFK+MLVPNKMQHVLCTGNLV K+Q+++ R+LAPN+H+VRGDF+E ++FPE+KVVQIGQF++GL HGHQ+VPWGDP ALA  QR++  DIL+SGHTH+N+VNE+ G+WFINPGSITGAYSALE++ VPSFILLAVQG K VTYVYEL GDQV VSKSE++K
Sbjct:    1 MAGSDFGELALVIGDCHIPHRAAGIPEKFKRMLVPNKMQHVLCTGNLVSKEQFDEFRSLAPNMHIVRGDFDEQSNFPETKVVQIGQFKIGLVHGHQVVPWGDPLALAQVQREMDVDILISGHTHKNEVNEYEGKWFINPGSITGAYSALETDVVPSFILLAVQGNKVVTYVYELKGDQVNVSKSEYTK 188
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BLAST of mRNA_L-elsbetiae_contig5854.14313.1 vs. uniprot
Match: A0A7S2S7P2_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7P2_9STRA)

HSP 1 Score: 305 bits (781), Expect = 1.910e-103
Identity = 139/189 (73.54%), Postives = 167/189 (88.36%), Query Frame = 2 
Query:   59 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADILVSGHTHRNQVNEFGGRWFINPGSITGAYSALESEAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKAP 625
            MA DFGELVLV+GD+ IPHR A+IPE+FK+MLVPNKMQHVLCTGNLV K+Q+++ R+LAPN+HVV+GDF+++  FPE KVVQIGQFR+GL HGHQ+VPWGDP AL+  QRQ+  DI++SGHTHRN+VNE+ G+WFINPGSITGAYSA E + +PSFILLAVQG K VTYVYELHG++VEVSKSEF K P
Sbjct:    1 MASDFGELVLVVGDVLIPHRAASIPEQFKRMLVPNKMQHVLCTGNLVTKEQFDEFRSLAPNMHVVKGDFDDNPLFPEQKVVQIGQFRIGLIHGHQVVPWGDPIALSTVQRQMDVDIIISGHTHRNEVNEYEGKWFINPGSITGAYSATEPDVIPSFILLAVQGNKVVTYVYELHGEKVEVSKSEFQKKP 189
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BLAST of mRNA_L-elsbetiae_contig5854.14313.1 vs. uniprot
Match: A0A7S2FLA0_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLA0_9STRA)

HSP 1 Score: 305 bits (782), Expect = 2.510e-103
Identity = 143/185 (77.30%), Postives = 163/185 (88.11%), Query Frame = 2 
Query:   68 DFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADILVSGHTHRNQVNEFGGRWFINPGSITGAYSALESEAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKA 622
            DFGELVLV+GD HIPHR A IPEKFK+MLVPNKMQHVLCTGNLV K+QY++ R LAPN+H+VRGDF+ES+SFPE+KVVQIG F++GL HGHQIVPWGDP ALA  QRQL  DILV+GHTH+N+VNE+ G+WFINPGSITGAYSALES+   SFILLAVQG K VTYVYEL  D+VEVSKSEF K+
Sbjct:   22 DFGELVLVVGDCHIPHRAAMIPEKFKRMLVPNKMQHVLCTGNLVTKEQYDEFRNLAPNMHIVRGDFDESSSFPETKVVQIGNFKIGLAHGHQIVPWGDPLALAAVQRQLDVDILVTGHTHKNEVNEYEGKWFINPGSITGAYSALESDVTASFILLAVQGNKVVTYVYELRDDKVEVSKSEFQKS 206
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BLAST of mRNA_L-elsbetiae_contig5854.14313.1 vs. uniprot
Match: A0A7S3HCY7_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCY7_9STRA)

HSP 1 Score: 303 bits (776), Expect = 1.030e-102
Identity = 138/185 (74.59%), Postives = 164/185 (88.65%), Query Frame = 2 
Query:   68 DFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADILVSGHTHRNQVNEFGGRWFINPGSITGAYSALESEAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKA 622
            DFGEL LV+GD HIPHR A IPEKF++MLVPNKMQHVLCTGN+V K+QY++L+ LAPNVHVVRG F+E ++FPE KV+QIGQF++GL HGHQIVPWGD ++LA+ QRQL  DIL++GHTHRN+VNE+ G+WFINPGSITGAYS L +E  PSFILLA+QG+K VTYVYELHGDQV+VSKSEF KA
Sbjct:    3 DFGELALVVGDFHIPHRAAGIPEKFQRMLVPNKMQHVLCTGNVVTKEQYDELKGLAPNVHVVRGGFDEDSTFPEYKVIQIGQFKIGLIHGHQIVPWGDAHSLAVIQRQLDVDILITGHTHRNEVNEYEGKWFINPGSITGAYSTLTTEVTPSFILLAIQGSKVVTYVYELHGDQVDVSKSEFCKA 187
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BLAST of mRNA_L-elsbetiae_contig5854.14313.1 vs. uniprot
Match: A0A7S3NIH3_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIH3_9STRA)

HSP 1 Score: 298 bits (762), Expect = 1.440e-100
Identity = 136/188 (72.34%), Postives = 160/188 (85.11%), Query Frame = 2 
Query:   59 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADILVSGHTHRNQVNEFGGRWFINPGSITGAYSALESEAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKA 622
            M+ DFGELVLVLGD+HIPHR A IPEKF++MLVPNKMQHV+CTGNL  ++QY++LR LAPN+HVV GD +E  SFPE K+V +GQFR+G+ HGHQIVPWGD N+LAM QR+L  DIL+SGHTH+N V EF G+WFINPGSITGAYS+LE E  PSF+LLA+QG K V YVYELHGD VEVSKSEF K+
Sbjct:    1 MSKDFGELVLVLGDVHIPHRCAFIPEKFQRMLVPNKMQHVICTGNLCTREQYDELRALAPNIHVVAGDMDEGLSFPEHKIVTVGQFRIGVIHGHQIVPWGDKNSLAMTQRRLDVDILISGHTHKNLVQEFDGKWFINPGSITGAYSSLEPEVTPSFVLLAIQGKKVVIYVYELHGDNVEVSKSEFQKS 188
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BLAST of mRNA_L-elsbetiae_contig5854.14313.1 vs. uniprot
Match: A0A835ZKD1_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKD1_9STRA)

HSP 1 Score: 285 bits (728), Expect = 4.770e-95
Identity = 136/192 (70.83%), Postives = 160/192 (83.33%), Query Frame = 2 
Query:   65 GDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTS--FPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADILVSGHTHRNQVNEFGGRWFINPGSITGAYSALESEA-----VPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSK 619
            GDFGELVLVLGD+HIPHR AAIPEKF++MLVPNKM+HVLCTGNLV KD+Y +LR LAPNVHVV GDF++S +  +PESKVV IG +R+GL HGHQ+VPWGDP AL++ QRQL  DILVSGHTHRN+V    GRW +NPGSITGAYS + S       VPSF+LLA+QGA+CV YVYEL G QV+V+KSEF+K
Sbjct:    2 GDFGELVLVLGDLHIPHRAAAIPEKFRRMLVPNKMKHVLCTGNLVTKDRYEELRALAPNVHVVSGDFDDSAAAAWPESKVVHIGAWRIGLVHGHQVVPWGDPAALSILQRQLDCDILVSGHTHRNEVRAHEGRWLVNPGSITGAYSPIASAPAAEPIVPSFMLLAIQGARCVAYVYELRGGQVDVTKSEFTK 193
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BLAST of mRNA_L-elsbetiae_contig5854.14313.1 vs. uniprot
Match: A0A485KLT9_9STRA (Vacuolar protein sorting-associated protein 29 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KLT9_9STRA)

HSP 1 Score: 281 bits (719), Expect = 5.640e-94
Identity = 128/187 (68.45%), Postives = 157/187 (83.96%), Query Frame = 2 
Query:   59 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADILVSGHTHRNQVNEFGGRWFINPGSITGAYSALESEAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSK 619
            MA DFGELVL++GDMHIPHR   IPEKFKKMLVPNKMQHVLCTGN+V K+Q+++LR LAPNVH+VRGDF+E  ++P+ KV+ IGQFR+GL HGHQIVPWGD ++LA  QR+L  DILV+GHTH+ +++   G+WF+NPGSITGAYS   ++ VPSFIL+A+QG K V YVYEL GD V VSKSEF+K
Sbjct:    1 MAADFGELVLIVGDMHIPHRAVDIPEKFKKMLVPNKMQHVLCTGNMVTKEQFDELRDLAPNVHIVRGDFDELCNYPDKKVITIGQFRIGLCHGHQIVPWGDADSLAALQRKLNVDILVTGHTHQYKLHAQNGKWFVNPGSITGAYSNCTTDVVPSFILMAIQGPKIVAYVYELKGDNVVVSKSEFTK 187
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BLAST of mRNA_L-elsbetiae_contig5854.14313.1 vs. uniprot
Match: A0A067CJI0_SAPPC (Vacuolar protein sorting-associated protein 29 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJI0_SAPPC)

HSP 1 Score: 277 bits (708), Expect = 2.320e-92
Identity = 128/187 (68.45%), Postives = 154/187 (82.35%), Query Frame = 2 
Query:   59 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADILVSGHTHRNQVNEFGGRWFINPGSITGAYSALESEAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSK 619
            MA DFGELVL++GD HIPHR   IPEKFKKMLVPNKMQHVLCTGNLV K+ +++LR LAPNVHVVRGDF+E+ +FP+ KVV IGQ+R+GL HGHQIVPWGD ++LA  QR++  DILV+GHTH+ +++   G+WF+NPGSITGAY     + VPSFIL+A+QG K V YVYEL GD V VSKSEFSK
Sbjct:    1 MAADFGELVLIVGDYHIPHRAMDIPEKFKKMLVPNKMQHVLCTGNLVTKETFDELRELAPNVHVVRGDFDENATFPDKKVVTIGQYRIGLCHGHQIVPWGDVDSLAALQRKMNVDILVTGHTHQYKLHAQNGKWFVNPGSITGAYGNFTPDVVPSFILMAIQGNKVVAYVYELKGDNVVVSKSEFSK 187
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BLAST of mRNA_L-elsbetiae_contig5854.14313.1 vs. uniprot
Match: A0A1V9ZFC7_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFC7_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.850e-90
Identity = 127/189 (67.20%), Postives = 155/189 (82.01%), Query Frame = 2 
Query:   59 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEE--STSFPESKVVQIGQFRVGLTHGHQIVPWGDPNALAMAQRQLGADILVSGHTHRNQVNEFGGRWFINPGSITGAYSALESEAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSK 619
            MA DFGELVLV+GD+HIPHR   IPEKFKKMLVPNKMQHV+CTGNLV K+Q+++LR LAPNVHVVRGDF+E  ST+FP+ KV+ IGQFR+G+ HGHQIVPWGD ++LA  QR+L  DIL++GHTH  +++   G+WF+NPGSITGAYS    + +PSFIL+AVQ  K V YVYEL  D V VSKSE++K
Sbjct:    1 MAADFGELVLVVGDLHIPHRALDIPEKFKKMLVPNKMQHVVCTGNLVTKEQFDELRDLAPNVHVVRGDFDEVESTTFPDKKVITIGQFRIGICHGHQIVPWGDVDSLAALQRKLNVDILITGHTHEYKLHTQNGKWFVNPGSITGAYSNFTPDVIPSFILMAVQANKVVAYVYELKNDNVVVSKSEYTK 189
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5854.14313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZW9_ECTSI5.600e-13396.81Vacuolar protein sorting-associated protein 29 n=2... [more]
A0A7S2BTX2_9STRA1.700e-10475.00Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A7S2S7P2_9STRA1.910e-10373.54Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A7S2FLA0_9STRA2.510e-10377.30Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A7S3HCY7_9STRA1.030e-10274.59Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A7S3NIH3_9STRA1.440e-10072.34Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A835ZKD1_9STRA4.770e-9570.83Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A485KLT9_9STRA5.640e-9468.45Vacuolar protein sorting-associated protein 29 n=3... [more]
A0A067CJI0_SAPPC2.320e-9268.45Vacuolar protein sorting-associated protein 29 n=2... [more]
A0A1V9ZFC7_9STRA1.850e-9067.20Vacuolar protein sorting-associated protein 29 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5854contigL-elsbetiae_contig5854:599..4650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score378.6
Seed ortholog evalue1.7e-102
Seed eggNOG ortholog2880.D7FZW9
Preferred nameVPS29
KEGG koko:K07095,ko:K18467
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000323,GO:0001881,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005767,GO:0005768,GO:0005770,GO:0005771,GO:0005773,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0010008,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0023051,GO:0030139,GO:0030904,GO:0030906,GO:0031090,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032009,GO:0032010,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042147,GO:0042886,GO:0043112,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045335,GO:0046872,GO:0046907,GO:0046914,GO:0048193,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098876,GO:1990126
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsCOG0622@1,KOG3325@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Ec32 ortholog descriptionsimilar to Vacuolar protein sorting 29 (Vesicle protein sorting 29)
Ec32 orthologEc-22_003790.1
Exons3
Model size631
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5854.14313.1prot_L-elsbetiae_contig5854.14313.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5854 657..4650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816631.7644029-UTR-L-elsbetiae_contig5854:598..6561622816631.7644029-UTR-L-elsbetiae_contig5854:598..656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5854 599..656 +
1691683698.8046794-UTR-L-elsbetiae_contig5854:598..6561691683698.8046794-UTR-L-elsbetiae_contig5854:598..656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5854 599..656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816631.7772887-CDS-L-elsbetiae_contig5854:656..8261622816631.7772887-CDS-L-elsbetiae_contig5854:656..826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5854 657..826 +
1691683698.8155415-CDS-L-elsbetiae_contig5854:656..8261691683698.8155415-CDS-L-elsbetiae_contig5854:656..826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5854 657..826 +
1622816631.78746-CDS-L-elsbetiae_contig5854:2575..27831622816631.78746-CDS-L-elsbetiae_contig5854:2575..2783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5854 2576..2783 +
1691683698.8248208-CDS-L-elsbetiae_contig5854:2575..27831691683698.8248208-CDS-L-elsbetiae_contig5854:2575..2783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5854 2576..2783 +
1622816631.8022346-CDS-L-elsbetiae_contig5854:4455..46501622816631.8022346-CDS-L-elsbetiae_contig5854:4455..4650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5854 4456..4650 +
1691683698.834881-CDS-L-elsbetiae_contig5854:4455..46501691683698.834881-CDS-L-elsbetiae_contig5854:4455..4650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5854 4456..4650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5854.14313.1

>prot_L-elsbetiae_contig5854.14313.1 ID=prot_L-elsbetiae_contig5854.14313.1|Name=mRNA_L-elsbetiae_contig5854.14313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKD
QYNDLRTLAPNVHVVRGDFEESTSFPESKVVQIGQFRVGLTHGHQIVPWG
DPNALAMAQRQLGADILVSGHTHRNQVNEFGGRWFINPGSITGAYSALES
EAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKAPA*
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mRNA from alignment at L-elsbetiae_contig5854:599..4650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5854.14313.1 ID=mRNA_L-elsbetiae_contig5854.14313.1|Name=mRNA_L-elsbetiae_contig5854.14313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4052bp|location=Sequence derived from alignment at L-elsbetiae_contig5854:599..4650+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTAGCCGAAAAAGGTTTCGAGCGGATCCTCTGAGGTCAGTCAAAGCCT
AGAAGGCCATGGCGGGGGACTTCGGGGAGCTGGTGCTGGTCCTGGGGGAC
ATGCACATCCCGCACCGAGAGGCGGCGATCCCGGAGAAGTTCAAGAAGAT
GCTGGTGCCCAACAAGATGCAACACGTCCTGTGCACGGGGAACCTCGTGG
GCAAAGACCAGTACAACGACCTTCGAACGTGAGTTGGATGTACATACATT
CCTTGGACATATGTACGGGACATGCTTTTGTTGTCGGGGGGAAATGGGTA
TTTAGGGGGGGGGGGGAAGGGAACAAGATGCAACACATCGTATGCACGGG
GACCCTCGAGGGGAAAGACAAGTACAACGACCTTCGAACATGAGTTGGAT
GTAAGTATGTACATACATTCCTTGGAAATACCGGACATGATTTTCTGTTG
GGGGAGGGGGGGGGGCGCCAAGATGCAGCACATCACAGGAATTGTTTTTG
CCTGACTCGCGATCAAACCGTCGGGAAAAATGTCCCCCTCGCCACACCCC
TCGCATACCAAATATAAATCTGTTAAGAATTGACTTTTTCCTGAGAACGC
TGCATTTCACCGCCTCTCGGCCTCTGTGAGCGGAGTATTCGTACTTTTCG
GGCTGCTGCTGCCGATTTGTGCAGATTTCTGTCACCTCCACAAATACATA
AGATGTGACTATATTTAGCATTGCCTTGGAAGCGATTTCAATAAAGCGGG
GGCGCGTTAGCGGCCAACCCTTGTACAAACATGCATACACGCCTCGACCG
CTGCTCTAGAAACCTGGCCCCGAGAAGCTCTTAGCAATGGGGAACGTCGA
GGGGAAAGGAAGACCAGTCAGTACAACGACCTTCGAATGTTGGTATGTAT
GGTATATACATGGCCCGATAAATTACGGGGTGTGTCGCCGGGGCTCTTTT
TGTATCCAGTTTGTTGTCATGACACAGTTTATAAACCATTTGCTGGTAAA
CGTGTGGGTACCCGTAATAAGAATAAAAATAAATAGTTCTCCATCTTCTG
CTCAAATATCTGCCAACGATTTACATACACCTGCTGCGATGCCCACGCGT
TGTTAGCCCCCCCTCAAACTAGCTATAGGTGACTGTGCAGCAGTGCTTCG
AAGTATAGTTTCGGTTAAGTGTCGTCCAGCTAAGCTATGCCGTTAGGCCC
TCAGTCTAGTGCTGCTAGTTGGAGCTTGCTTTCCGCTTTTGACGTGGAAT
ATCTTGGAGTGGGAAGTCCACCGGTGGATGTACTCCGCAGCAGGGCTTTC
GCGGGCGTTTTGGCGAAGAAACAAAGTACTCGGAAGAATACCATCTTAAG
GGTTATTGCAAGAGAGGGGTAGAGCGCCAAGCGTGGTGTGGAAATCCCGA
AAACATTTGATGCAGTTGCAATCGTACACCATTGAAAGTGCGCACCAAAT
ATCTGGTGCATTGGATTCATCAATGATCAATCAATACTAATAAGGTGGTG
GCCATGTCAACGCCCAGCATCCGCATAGCCCTATGCCAGGAAACACACAC
GGAACTTCGGGACAAACATCACTTATTTTACAACCCGTGTGTTGCGGTGT
GTGTGTTGTTCTTCACATTAAAACCCGTTCCGATCTCTCTATCCAGTACG
CCGCCACGAGTCCGTACTAATCCAACACTGACGCGGTCGATTCCCGTGGT
CACAGGATAACTTACCAAAAAAAAGGGTAAATATAGACGAGACTACTGAA
TAATGAAAATAAATAAAATGGACCCGAAGAAGGGTCCACAAAGCACAGAA
ACAAAAGATCAGACACAGATAGTCTGGAGCCCTCCGCTCCCCTCTATACA
TGCTACGCGAGGCGAAGAAAAAAAGTGAACAAGCCAACATCGCCAACCGC
GGGGGGATACTTACGCCCCCTGATTCTATCTTACCGCTACATACCCAAAA
TCCAAATGCGTACTCACATCTTTTCAGACTGGCGCCAAACGTCCACGTGG
TGCGGGGGGACTTCGAAGAGTCCACGAGCTTTCCGGAGTCGAAGGTGGTG
CAGATAGGGCAGTTCCGGGTGGGTCTCACCCACGGCCACCAGATCGTCCC
CTGGGGCGACCCCAACGCGCTGGCGATGGCGCAGCGGCAGCTAGGGGCGG
ACATCCTGGTGTCGGGGCACACGCACCGGAATCAGGTCAGGTCAACACCT
GTGTATGACGTCTTTTTTTTGTTTACATCCTGGTGTCGGGGCACACGCAC
CGGAATCAGGTCTGGTCAACACCGATGACTTTTTGTTTTATTTTTGTACT
ATTTTGCAGTGATGTCGATAACCAGGTACCGGTTATAACCGGTTATAGGT
TTCCGCGGTAGGTACCCTGGAAACCTCCGGTTATTTTTCAGATTGTTGGG
GGCCCTCAGTTGGGGTGAGGGTATCCCCTGTGCGGGGGCCCTCTATCCCC
TCCCTGTGCGCGCCCCCCTCAGACACCGCGCAGGCGCACGCCACAGACCA
CAGAACAGACAGCTGTCAACAGACCCCCACGATATCATCAGCAGACAGCA
GACAGACACAAAGACCACCACATGGCCCTTTCTTCGGCATGGAGTATCGG
GCCCGCACTCTCGGTTGAAAATGAGAACCTCGACGGCCGCGGCGCAGCTT
TTCTTGAGCTGGTCACAGTTGTCACCGTATGCGTCATGCAGCATGCTGCT
TCCGCCCAGAGTGCGAAATACCTTGAGTGCGTACGTTGTATACCACCCCG
GGGATGGGAGTTTTCGTCCCCGGCTAGAGCGGTTATAACCGGTCAGTACC
CTGCTCGAACCCCGGTTATCGACATCACTTCGGTTATAACCGGTCAGTAC
CCTGCTCGAACCCCGGTTATCGACATCACTTCAGTAGGAGGACTATGTAC
AGTAGTATTACTGTAGGCGTCAGCAGGATAAAACAGTGTCTCCAACCTGT
GAAAATATTATTTCCGGGAGGGGCTGTTGTCCACACGCCAACCCGTCACC
CCCCCCGGCTCCAATGGTACAAAATCGCCAAGGCGCGTAGTTCCTGGATT
TCGCGCTTGGTTTCGAGTCTCTCTGTCATGCATTGGTTAATACTGAACGG
GGGGCAAACGTAGTTCTGTAGTCGAATGGAGATTCATTCGTGGATGCGTG
GTTCAGTAGGATATATGTTTTTTACCGGCATATTCATAGGTGTACCTCCT
CGGCTTTGTGTACCCTTGCCCGGTGGATCTGCGTGTGTCCTTTTTCGGAT
CTTCTGATGGCTCTAGCACTTCTGTGACCACGGGCCGTGAGTTGCTAGAT
TTTTGTAATTAGCAATCTCGATTATACGAGCTAATGTGAAGAAACAACAA
CAACATGGTACATTTTGTTTTTTACATATTTATCATGAGATTTATTGTTG
GTTTTTGCATGTACAAAAACATCCTGGTACCCTACGCTCGCTGTCGCTTT
GTGACCACGGGCCACAACATACATACATACATACATACATACATACATAC
ATACATACACAGGTTTGAGATTTTCGGGGGAGGGAATGTTAGCCACAACC
CAAAACCGAGCCAACAATCATCACCAGCACCAGATTCTCGGCGAATGTGA
GAGGGTTCAAATCCCTTTTTTCTTCTTTTTTTCGCTTCAATTTTATTTTT
ATATTTTTGATCTTTTGTTTTTTTGCTTTTATTTAGCTTGAGATAATAGC
TACGTACATGTGCATGTGGCATATTATTTTTTATCTAAATCAGTTATATT
TTACTTTGTAAACATCTGAATAGAGTAATAACCACCCAGGCTTAAAACCA
ATAACCATCGTCGGTGCCGCCCATCCAACAACGCGCTCACCGGAAACGAA
CAAACAGGTGAACGAATTCGGCGGTCGGTGGTTCATCAACCCGGGGTCCA
TCACGGGGGCGTACTCCGCGCTTGAGTCGGAGGCGGTGCCGAGCTTCATC
CTGCTGGCGGTGCAGGGGGCCAAGTGCGTCACGTACGTGTACGAGCTGCA
CGGGGACCAGGTGGAGGTGTCCAAGAGCGAGTTCAGCAAAGCCCCCGCAT
GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5854:599..4650+

>mRNA_L-elsbetiae_contig5854.14313.1 ID=mRNA_L-elsbetiae_contig5854.14313.1|Name=mRNA_L-elsbetiae_contig5854.14313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig5854:599..4650+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGGGACTTCGGGGAGCTGGTGCTGGTCCTGGGGGACATGCACAT
CCCGCACCGAGAGGCGGCGATCCCGGAGAAGTTCAAGAAGATGCTGGTGC
CCAACAAGATGCAACACGTCCTGTGCACGGGGAACCTCGTGGGCAAAGAC
CAGTACAACGACCTTCGAACATGGCGGGGGACTTCGGGGAGCTGGTGCTG
GTCCTGGGGGACATGCACATCCCGCACCGAGAGGCGGCGATCCCGGAGAA
GTTCAAGAAGATGCTGGTGCCCAACAAGATGCAACACGTCCTGTGCACGG
GGAACCTCGTGGGCAAAGACCAGTACAACGACCTTCGAACACTGGCGCCA
AACGTCCACGTGGTGCGGGGGGACTTCGAAGAGTCCACGAGCTTTCCGGA
GTCGAAGGTGGTGCAGATAGGGCAGTTCCGGGTGGGTCTCACCCACGGCC
ACCAGATCGTCCCCTGGGGCGACCCCAACGCGCTGGCGATGGCGCAGCGG
CAGCTAGGGGCGGACATCCTGGTGTCGGGGCACACGCACCGGAATCAGAC
TGGCGCCAAACGTCCACGTGGTGCGGGGGGACTTCGAAGAGTCCACGAGC
TTTCCGGAGTCGAAGGTGGTGCAGATAGGGCAGTTCCGGGTGGGTCTCAC
CCACGGCCACCAGATCGTCCCCTGGGGCGACCCCAACGCGCTGGCGATGG
CGCAGCGGCAGCTAGGGGCGGACATCCTGGTGTCGGGGCACACGCACCGG
AATCAGGTGAACGAATTCGGCGGTCGGTGGTTCATCAACCCGGGGTCCAT
CACGGGGGCGTACTCCGCGCTTGAGTCGGAGGCGGTGCCGAGCTTCATCC
TGCTGGCGGTGCAGGGGGCCAAGTGCGTCACGTACGTGTACGAGCTGCAC
GGGGACCAGGTGGAGGTGTCCAAGAGCGAGTTCAGCAAAGCCCCCGCATG
AGTGAACGAATTCGGCGGTCGGTGGTTCATCAACCCGGGGTCCATCACGG
GGGCGTACTCCGCGCTTGAGTCGGAGGCGGTGCCGAGCTTCATCCTGCTG
GCGGTGCAGGGGGCCAAGTGCGTCACGTACGTGTACGAGCTGCACGGGGA
CCAGGTGGAGGTGTCCAAGAGCGAGTTCAGCAAAGCCCCCGCATGA
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