mRNA_L-elsbetiae_contig5853.14311.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5853.14311.1 vs. uniprot
Match: A0A6H5KZ26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ26_9PHAE) HSP 1 Score: 166 bits (420), Expect = 6.400e-46 Identity = 89/143 (62.24%), Postives = 96/143 (67.13%), Query Frame = 1 Query: 274 AMGVASDAQLSCPLCFTTVCLECQRHAKYSNQFRAVTGINVTVNHDVFLTFDQVSAGGGXXXXXXXXXXXXXXXXXXXXRDSGDGVRQGTHPPAGVSGDGRQEXXXXXXXXMFHPVCCVECDHRVGVYDAEEVFHFFGVVASG 702 AMGVASDAQLSCPLCFTTVCLECQRHAKY NQFRAVTGINV +N+DVFLT D VS GG RDSG GV + + A V +G +E MFHPV C ECDHRVGVYD +EVFHFFGVVASG Sbjct: 130 AMGVASDAQLSCPLCFTTVCLECQRHAKYYNQFRAVTGINVNINYDVFLTLDDVSEGGSVQRKGRRKGHGKTPAVASVPRDSGGGVDR-QNQTAQVDAEGGEEEQE-----MFHPVSCGECDHRVGVYDVDEVFHFFGVVASG 266
BLAST of mRNA_L-elsbetiae_contig5853.14311.1 vs. uniprot
Match: D8LQE6_ECTSI (E2f-associated phosphoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE6_ECTSI) HSP 1 Score: 145 bits (367), Expect = 4.560e-38 Identity = 101/145 (69.66%), Postives = 107/145 (73.79%), Query Frame = 1 Query: 271 GAMGVASDAQLSCPLCFTTVCLECQRHAKYSNQFRAVTGINVTVNHDVFLTFDQVSAGGGXXXXXXXXXXXXXXXXXXXXRDSGDGVR-QGTHPPAGVSGDGRQEXXXXXXXXMFHPVCCVECDHRVGVYDAEEVFHFFGVVASG 702 G MGVASDAQLSCPLCFTTVCLECQRHAKY NQFRAVTGINV +N+DVFLT D VS XXXXXXXXXXXXXXXXXXXX + A V G+ R+E FHPV C ECDHRVGVYD +EVFHFFGVVASG Sbjct: 128 GPMGVASDAQLSCPLCFTTVCLECQRHAKYYNQFRAVTGINVNINYDVFLTLDDVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDRRNQSAQVDGEDREEEQE-----TFHPVSCGECDHRVGVYDVDEVFHFFGVVASG 267
BLAST of mRNA_L-elsbetiae_contig5853.14311.1 vs. uniprot
Match: A0A5J9UZK4_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UZK4_9POAL) HSP 1 Score: 82.0 bits (201), Expect = 4.140e-15 Identity = 51/137 (37.23%), Postives = 61/137 (44.53%), Query Frame = 1 Query: 289 SDAQLSCPLCFTTVCLECQRHAKYSNQFRAVTGINVTVNHDVFLTFDQVSAGGGXXXXXXXXXXXXXXXXXXXXRDSGDGVRQGTHPPAGVSGDGRQEXXXXXXXXMFHPVCCVECDHRVGVYDAEEVFHFFGVVAS 699 SDA LSCP CFTT+CL+CQRH KY NQ+RA+ N V D L D+ G R+ A S E +HPVCC C VGVYD +EV+HFF V+ S Sbjct: 64 SDAVLSCPACFTTLCLDCQRHEKYVNQYRAMFVRNCKVKTDQILREDK-------------------------------GKRKNRKGRAADSSTTSTEGENKGQ--AYHPVCCEVCSTEVGVYDEDEVYHFFNVIPS 167
BLAST of mRNA_L-elsbetiae_contig5853.14311.1 vs. uniprot
Match: U6CWA2_NEOVI (E2F-associated phosphoprotein (Fragment) n=1 Tax=Neovison vison TaxID=452646 RepID=U6CWA2_NEOVI) HSP 1 Score: 80.1 bits (196), Expect = 7.670e-15 Identity = 46/137 (33.58%), Postives = 63/137 (45.99%), Query Frame = 1 Query: 289 SDAQLSCPLCFTTVCLECQRHAKYSNQFRAVTGINVTVNHDVFLTFDQVSAGGGXXXXXXXXXXXXXXXXXXXXRDSGDGVRQGTHPPAGVSGDGRQEXXXXXXXXMFHPVCCVECDHRVGVYDAEEVFHFFGVVAS 699 SDA L+CP C TT+CL+CQRH Y Q+RA+ +N +VN + L + + G + H A + + E ++HPV C EC V VYD +EVFHFF V+AS Sbjct: 18 SDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCSVNKEEVLRYK---------------------IPENRKKRRGPKKMRSNHEDAAEPAEAQTEE-------LYHPVMCTECSTEVAVYDKDEVFHFFNVLAS 126
BLAST of mRNA_L-elsbetiae_contig5853.14311.1 vs. uniprot
Match: A0A3N6SGJ1_BRACR (Uncharacterized protein n=2 Tax=Brassiceae TaxID=981071 RepID=A0A3N6SGJ1_BRACR) HSP 1 Score: 80.5 bits (197), Expect = 9.620e-15 Identity = 47/140 (33.57%), Postives = 62/140 (44.29%), Query Frame = 1 Query: 280 GVASDAQLSCPLCFTTVCLECQRHAKYSNQFRAVTGINVTVNHDVFLTFDQVSAGGGXXXXXXXXXXXXXXXXXXXXRDSGDGVRQGTHPPAGVSGDGRQEXXXXXXXXMFHPVCCVECDHRVGVYDAEEVFHFFGVVAS 699 G ASDA LSCP CFTTVCLECQRH +Y Q+RAV +N V+ D L + V + G GD ++ + V C C +GV+D+EE++HFF V+ S Sbjct: 44 GRASDAVLSCPACFTTVCLECQRHEQYVTQYRAVFVVNCNVDKDKALQHNTVPSKAGKRR-----------------------------------GDSEEKETDSADSGRVNSVVCSTCSTEIGVFDSEEIYHFFNVIPS 148
BLAST of mRNA_L-elsbetiae_contig5853.14311.1 vs. uniprot
Match: B8AFT3_ORYSI (Uncharacterized protein n=7 Tax=Oryzinae TaxID=1648021 RepID=B8AFT3_ORYSI) HSP 1 Score: 80.9 bits (198), Expect = 1.070e-14 Identity = 49/140 (35.00%), Postives = 61/140 (43.57%), Query Frame = 1 Query: 280 GVASDAQLSCPLCFTTVCLECQRHAKYSNQFRAVTGINVTVNHDVFLTFDQVSAGGGXXXXXXXXXXXXXXXXXXXXRDSGDGVRQGTHPPAGVSGDGRQEXXXXXXXXMFHPVCCVECDHRVGVYDAEEVFHFFGVVAS 699 G SDA LSCP CFTT+CL+CQRH Y NQ+RA+ N V D L G G R+ G + D ++HPVCC C VGV+D +EV+HFF V+ S Sbjct: 61 GRTSDAVLSCPACFTTLCLDCQRHETYVNQYRAMFVRNCKVKTDQILR-------------------------------EGKGKRKNRK---GKAADSSTTSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVIPS 166
BLAST of mRNA_L-elsbetiae_contig5853.14311.1 vs. uniprot
Match: A0A0A8XMV4_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A8XMV4_ARUDO) HSP 1 Score: 80.5 bits (197), Expect = 1.510e-14 Identity = 51/140 (36.43%), Postives = 60/140 (42.86%), Query Frame = 1 Query: 280 GVASDAQLSCPLCFTTVCLECQRHAKYSNQFRAVTGINVTVNHDVFLTFDQVSAGGGXXXXXXXXXXXXXXXXXXXXRDSGDGVRQGTHPPAGVSGDGRQEXXXXXXXXMFHPVCCVECDHRVGVYDAEEVFHFFGVVAS 699 G SDA LSCP CFTT+CL+CQRH KY NQ+RA+ N V D L G G R+ S E +HPVCC C VGVYD +EV+HFF V+ S Sbjct: 61 GRTSDAVLSCPACFTTLCLDCQRHDKYVNQYRAMFVRNCKVKTDQILR-------------------------------EGKGKRKNHKGRTADSSTTTSEGENKGQ--TYHPVCCEVCSTEVGVYDEDEVYHFFNVIPS 167
BLAST of mRNA_L-elsbetiae_contig5853.14311.1 vs. uniprot
Match: A0A0E0K2R9_ORYPU (Uncharacterized protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0K2R9_ORYPU) HSP 1 Score: 81.3 bits (199), Expect = 1.650e-14 Identity = 49/140 (35.00%), Postives = 62/140 (44.29%), Query Frame = 1 Query: 280 GVASDAQLSCPLCFTTVCLECQRHAKYSNQFRAVTGINVTVNHDVFLTFDQVSAGGGXXXXXXXXXXXXXXXXXXXXRDSGDGVRQGTHPPAGVSGDGRQEXXXXXXXXMFHPVCCVECDHRVGVYDAEEVFHFFGVVAS 699 G +SDA LSCP CFTT+CL+CQRH Y NQ+RA+ N V D L G G R+ G + D ++HPVCC C VGV+D +EV+HFF V+ S Sbjct: 96 GRSSDAVLSCPACFTTLCLDCQRHETYVNQYRAMFVRNCKVKTDQILR-------------------------------EGKGKRKNRK---GKAADSSATSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVIPS 201
BLAST of mRNA_L-elsbetiae_contig5853.14311.1 vs. uniprot
Match: A0A6I9R0I6_ELAGV (E2F-associated phosphoprotein n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R0I6_ELAGV) HSP 1 Score: 80.1 bits (196), Expect = 1.940e-14 Identity = 48/140 (34.29%), Postives = 64/140 (45.71%), Query Frame = 1 Query: 280 GVASDAQLSCPLCFTTVCLECQRHAKYSNQFRAVTGINVTVNHDVFLTFDQVSAGGGXXXXXXXXXXXXXXXXXXXXRDSGDGVRQGTHPPAGVSGDGRQEXXXXXXXXMFHPVCCVECDHRVGVYDAEEVFHFFGVVAS 699 G +SDA LSCP CFTT+CL+CQRH +Y Q+RA+ +N V D L G R+ P +S + +E +F PVCC C VGV+D +EV+HFF V+ S Sbjct: 60 GRSSDAVLSCPACFTTLCLDCQRHEQYVTQYRAMFVLNCNVKTDQILR---------------------------------QGKRKSRKPNGRMSSEKSRENLENDV--VFWPVCCSVCSTEVGVFDEDEVYHFFNVIPS 164
BLAST of mRNA_L-elsbetiae_contig5853.14311.1 vs. uniprot
Match: Q6GPE8_XENLA (E2F-associated phosphoprotein L homeolog n=3 Tax=Xenopus laevis TaxID=8355 RepID=Q6GPE8_XENLA) HSP 1 Score: 82.8 bits (203), Expect = 2.070e-14 Identity = 50/137 (36.50%), Postives = 64/137 (46.72%), Query Frame = 1 Query: 289 SDAQLSCPLCFTTVCLECQRHAKYSNQFRAVTGINVTVNHDVFLTFDQVSAGGGXXXXXXXXXXXXXXXXXXXXRDSGDGVRQGTHPPAGVSGDGRQEXXXXXXXXMFHPVCCVECDHRVGVYDAEEVFHFFGVVAS 699 SDA L+CP C TT+CL+CQRH Y Q+RA+ +N TVN L F S+ +R+ P +G +E M+HPV C EC V VYD EEV+HFF V+AS Sbjct: 184 SDAILNCPACMTTLCLDCQRHESYKTQYRAMFVMNCTVNKQELLRFPVQSSAKNKRQ-----------------------IRKKLKRPQTETGTETEETE------MYHPVKCNECSTEVAVYDKEEVYHFFNVLAS 291 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5853.14311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5853.14311.1 >prot_L-elsbetiae_contig5853.14311.1 ID=prot_L-elsbetiae_contig5853.14311.1|Name=mRNA_L-elsbetiae_contig5853.14311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp MGVASDAQLSCPLCFTTVCLECQRHAKYSNQFRAVTGINVTVNHDVFLTFback to top mRNA from alignment at L-elsbetiae_contig5853:721..1729+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5853.14311.1 ID=mRNA_L-elsbetiae_contig5853.14311.1|Name=mRNA_L-elsbetiae_contig5853.14311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1009bp|location=Sequence derived from alignment at L-elsbetiae_contig5853:721..1729+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5853:721..1729+ >mRNA_L-elsbetiae_contig5853.14311.1 ID=mRNA_L-elsbetiae_contig5853.14311.1|Name=mRNA_L-elsbetiae_contig5853.14311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig5853:721..1729+ (Laminarionema elsbetiae ELsaHSoW15)back to top |