mRNA_L-elsbetiae_contig5851.14309.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5851.14309.1
Unique NamemRNA_L-elsbetiae_contig5851.14309.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5851.14309.1 vs. uniprot
Match: D8LDY4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY4_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.280e-44
Identity = 97/126 (76.98%), Postives = 109/126 (86.51%), Query Frame = 2 
Query:    2 DKRKFAMTNAQALVERAHRELLAASTPPAVAAAVAELEKQEGRQGSTEPPPPAYEAFLEGLSEDFPPLSKGVLEAFEGELMRIRHESLAAAARAGKNVEANRATLREAGG-TAAKG-RASDPPAGP 373
            ++R+ AM NAQALVERAHRE +AAS PPAVAAAVAELEKQ  R+GSTEPPPPAYEAFLEGLSED+ PLSK +LEAFE EL+RIRHESLAA +RAG+ +EANRATLREAGG  AAKG RAS+  A P
Sbjct: 1542 EQRRSAMKNAQALVERAHREYMAASVPPAVAAAVAELEKQR-REGSTEPPPPAYEAFLEGLSEDYSPLSKSILEAFEAELLRIRHESLAAVSRAGEGIEANRATLREAGGGAAAKGKRASELTASP 1666
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BLAST of mRNA_L-elsbetiae_contig5851.14309.1 vs. uniprot
Match: A0A6H5K6G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G1_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 8.460e-31
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 2 
Query:    2 DKRKFAMTNAQALVERAHRELLAASTPPAVAAAVAELEKQEGRQGSTEPPPPAYEAFLEGLSEDFPPLSKGVLEAFE 232
            ++R+ A+ NAQALVERAHRE +AAS PPAVAAAVAELEKQ  R+GSTEPPPPAYEAFLEGLSED+PPLSK +LEAFE
Sbjct:   11 EQRRSAIKNAQALVERAHREYVAASVPPAVAAAVAELEKQR-REGSTEPPPPAYEAFLEGLSEDYPPLSKSILEAFE 86
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5851.14309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDY4_ECTSI1.280e-4476.98Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K6G1_9PHAE8.460e-3180.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5851contigL-elsbetiae_contig5851:6875..8847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.7e-37
Seed eggNOG ortholog2880.D8LDY4
KEGG koko:K10395
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size405
Cds size384
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5851.14309.1prot_L-elsbetiae_contig5851.14309.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5851 6875..8828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816631.4263535-CDS-L-elsbetiae_contig5851:6874..70441622816631.4263535-CDS-L-elsbetiae_contig5851:6874..7044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 6875..7044 -
1691683698.5421453-CDS-L-elsbetiae_contig5851:6874..70441691683698.5421453-CDS-L-elsbetiae_contig5851:6874..7044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 6875..7044 -
1622816631.4368725-CDS-L-elsbetiae_contig5851:7794..79931622816631.4368725-CDS-L-elsbetiae_contig5851:7794..7993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 7795..7993 -
1691683698.556006-CDS-L-elsbetiae_contig5851:7794..79931691683698.556006-CDS-L-elsbetiae_contig5851:7794..7993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 7795..7993 -
1622816631.446878-CDS-L-elsbetiae_contig5851:8813..88281622816631.446878-CDS-L-elsbetiae_contig5851:8813..8828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 8814..8828 -
1691683698.5662906-CDS-L-elsbetiae_contig5851:8813..88281691683698.5662906-CDS-L-elsbetiae_contig5851:8813..8828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 8814..8828 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816631.4602962-UTR-L-elsbetiae_contig5851:8828..88471622816631.4602962-UTR-L-elsbetiae_contig5851:8828..8847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5851 8829..8847 -
1691683698.5767355-UTR-L-elsbetiae_contig5851:8828..88471691683698.5767355-UTR-L-elsbetiae_contig5851:8828..8847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5851 8829..8847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5851.14309.1

>prot_L-elsbetiae_contig5851.14309.1 ID=prot_L-elsbetiae_contig5851.14309.1|Name=mRNA_L-elsbetiae_contig5851.14309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MTNAQALVERAHRELLAASTPPAVAAAVAELEKQEGRQGSTEPPPPAYEA
FLEGLSEDFPPLSKGVLEAFEGELMRIRHESLAAAARAGKNVEANRATLR
EAGGTAAKGRASDPPAGPLYFPSADGSG
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mRNA from alignment at L-elsbetiae_contig5851:6875..8847-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5851.14309.1 ID=mRNA_L-elsbetiae_contig5851.14309.1|Name=mRNA_L-elsbetiae_contig5851.14309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1973bp|location=Sequence derived from alignment at L-elsbetiae_contig5851:6875..8847- (Laminarionema elsbetiae ELsaHSoW15)
GGACAAGAGGAAATTCGCCATGACAAACGCGCAGGTATGTACATATGTAT
GTTATGTATTTATGTGACGATCGACTCAGACAAGCAAGTACTCTTATTTT
GTATTACACATACTTCTTCTACATGTTGTGTGCACAAAAAGTAGATGCTG
TTGTTGTTGGACAAAACAGGTATGTACTTATTTTCTTTTGTATGTCTAAA
TATGTACGAAGTAGGTACATACTGCTGTGCAATGAAATATACTGCTGTTG
TTATTGGGAAAGTGATTGTGGAAACGTCCGAGGGGCTGAGGAGATCGAAA
GGTATGGAGGTGGACGTGGGGGTTGAGCTGGGCGGGGAAGCCTCAGGGCG
GGGATCGGGAGACCTGAGGGCGAGGATCGGGAGACCTGAGGGTGGGGGCG
CGTGAAAGCTCGTGAAACAAGAGTGGGTTTCGGATGGACGGCCGACTTTG
CGCAGCAGTCTCGGCTGCGCACCGAAGGCTGAGCATTCTTTCGACAGCAG
CAAGCAGCCCGTGCCAGAAAGGTTTTTTTTTTCGTTTTTTTTTCGAGTAA
ATAGGTATACGAATACACCGATGCCCTCCCTCCCTCATGTGCTTCTTGCT
CAGTCAGGGGTGGGTGGCGGGTGACTCTTGTAAGGGGTTACGCGTTGTCA
ATCTCTAGCGGGTGCCAGAATAGTATAACTCACTTGTTTCAAGTAGCTGA
CGCCATATTGTCAAGGGATTGGACCACTCAGCCATTAAGGTAAAAGGTTA
ACCAAGTACTCGGCTGAGAGTACATACATCTTAAAACATGACCCTCACAT
TCCTGAATTTATCATCAGTTTTCTGCGTCGCCCCCCCCCCCCCGTGTGAA
TCAGGCGCTTGTGGAGAGGGCCCACCGGGAGCTTCTCGCTGCGTCGACCC
CGCCGGCCGTCGCCGCCGCCGTCGCGGAGCTGGAGAAGCAGGAGGGCCGT
CAGGGCTCCACCGAGCCGCCTCCGCCTGCCTACGAGGCGTTCCTGGAGGG
GCTGTCGGAGGATTTCCCCCCCCTGTCCAAGGGCGTCCTGGAGGCGTTTG
AAGGTATTGTATTGTACCTATTTTAGGCGGTTTATGATTTACTCTTCTGG
CTTGCTGTTTTTTTTGTTTTGTTTTTTATGGTTTTGTTTTGGTGTTTTTT
TTTATTTAATTGCTGGTGGACGATTTATTCTGGTTTGCTGGTTTTTTTTA
ATCATGTACACAGATAAATAAATGTCAGCAGTCTTACGTCCAGTCTGTAG
AGAAGTCGCTCCAGAGGGACTACGGTTGTGTCGTAGGCGTACTAACCCCA
TGTTTCCCTATCCCAGATATAAATACTCGCGCAGAATCCGTAGTTCAATT
TTTTTGATGTTTTTTGTTTTGGTTTTGTTTTTTATTGCTGTCTGTTGTCG
TTGAGCGCTGTGTTTGCCGTGTGTAGGTTTGGTGGGATGGGGTGGGGTGG
AGTTGCTTGCTACTGTAATCTGCCGCTACATTCTTGTTTCGTTTTTTTTC
TTTCTCGGAAGCCGCACTGGTTGCCGGCGTTCTGCTTGCTGCCCCCCTCC
CCCCCCCCCCTAGCCAAGCCGAGCAGTGGCCGGCAGCTAAGGGCAGTGTT
TCATGGTGTGTGCTCTGCTATTTATGTATGTATTTTTCTGCCGCGCGATG
GACGAAAATGATTTACGTTCGGGACGGCCGCCGCTCTACTTCCGAGGTCG
AGATACAGAAAGCCCTGGTTCTTACGCCCCCCCCTACCCCGTTCTCGCTT
GTTGTTCCCCTTCGTTCCTTCTTCCCCCTCCCCCCCTCCCCGCCCGCCTG
CAGGGGAGCTGATGCGCATCCGCCACGAGTCACTCGCCGCCGCCGCGCGC
GCGGGGAAGAACGTCGAAGCCAACCGCGCCACCCTCCGCGAGGCGGGGGG
CACGGCCGCCAAGGGGAGGGCGTCGGATCCACCCGCGGGGCCCCTTTATT
TTCCGTCAGCTGACGGTAGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5851:6875..8847-

>mRNA_L-elsbetiae_contig5851.14309.1 ID=mRNA_L-elsbetiae_contig5851.14309.1|Name=mRNA_L-elsbetiae_contig5851.14309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig5851:6875..8847- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAACGCGCAGATGACAAACGCGCAGGCGCTTGTGGAGAGGGCCCA
CCGGGAGCTTCTCGCTGCGTCGACCCCGCCGGCCGTCGCCGCCGCCGTCG
CGGAGCTGGAGAAGCAGGAGGGCCGTCAGGGCTCCACCGAGCCGCCTCCG
CCTGCCTACGAGGCGTTCCTGGAGGGGCTGTCGGAGGATTTCCCCCCCCT
GTCCAAGGGCGTCCTGGAGGCGTTTGAAGGCGCTTGTGGAGAGGGCCCAC
CGGGAGCTTCTCGCTGCGTCGACCCCGCCGGCCGTCGCCGCCGCCGTCGC
GGAGCTGGAGAAGCAGGAGGGCCGTCAGGGCTCCACCGAGCCGCCTCCGC
CTGCCTACGAGGCGTTCCTGGAGGGGCTGTCGGAGGATTTCCCCCCCCTG
TCCAAGGGCGTCCTGGAGGCGTTTGAAGGGGAGCTGATGCGCATCCGCCA
CGAGTCACTCGCCGCCGCCGCGCGCGCGGGGAAGAACGTCGAAGCCAACC
GCGCCACCCTCCGCGAGGCGGGGGGCACGGCCGCCAAGGGGAGGGCGTCG
GATCCACCCGCGGGGCCCCTTTATTTTCCGTCAGCTGACGGTAGTGGGGG
GAGCTGATGCGCATCCGCCACGAGTCACTCGCCGCCGCCGCGCGCGCGGG
GAAGAACGTCGAAGCCAACCGCGCCACCCTCCGCGAGGCGGGGGGCACGG
CCGCCAAGGGGAGGGCGTCGGATCCACCCGCGGGGCCCCTTTATTTTCCG
TCAGCTGACGGTAGTGGG
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