mRNA_L-elsbetiae_contig5851.14308.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5851.14308.1
Unique NamemRNA_L-elsbetiae_contig5851.14308.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5851.14308.1 vs. uniprot
Match: D8LDY4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY4_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 3.750e-77
Identity = 148/174 (85.06%), Postives = 153/174 (87.93%), Query Frame = 1 
Query:    1 TVEALGSLSVDTTLAYSLERRVSALEGVRMSDQDICQLAQRMVELQSALDPARLSKRNKSSTHLLDAEKNRNACQAAYMRALKRLKEQLKHWREACGCGFDPSLLSDVARQALNDLRRGGGAGAKIEHILPHLDSGIS-TAGXXXXXXXSVANSRAASPELLGSKHIAPRLSQD 519
            T EAL SL+VDT L+ SLERRV+ALEGVR SDQDICQLAQRM ELQS LDPARLSKRNKSSTHLLDAEKNRNACQAAYMRALKRLKEQLKHWREACGCGFDPSLLSDVARQALNDLRRGGGAGAKIEHILPHLDS  S T  XXXXXXX  A SR  SP+L G K  +PRLSQD
Sbjct: 1733 TREALTSLAVDTVLSSSLERRVTALEGVRASDQDICQLAQRMAELQSTLDPARLSKRNKSSTHLLDAEKNRNACQAAYMRALKRLKEQLKHWREACGCGFDPSLLSDVARQALNDLRRGGGAGAKIEHILPHLDSSASITXXXXXXXXXXXAGSRPTSPDLFGGKQ-SPRLSQD 1905
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BLAST of mRNA_L-elsbetiae_contig5851.14308.1 vs. uniprot
Match: A0A6H5K6V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V9_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.790e-38
Identity = 81/99 (81.82%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:  235 MRALKRLKEQLKHWREACGCGFDPSLLSDVARQALNDLRRGGGAGAKIEHILPHLDSGISTAGXXXXXXX----SVANSRAASPELLGSKHIAPRLSQD 519
            MRALKRLKEQLKHWREACGCGFDPSLLSDVARQALNDLRRGGGAGAKIEHILPHLDS  S   XXXXXXX    S A SRA SP+L G K + PRLSQD
Sbjct:    1 MRALKRLKEQLKHWREACGCGFDPSLLSDVARQALNDLRRGGGAGAKIEHILPHLDSSASITXXXXXXXXXXXXSGAGSRATSPDLFGGKQV-PRLSQD 98
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BLAST of mRNA_L-elsbetiae_contig5851.14308.1 vs. uniprot
Match: A0A6H5K6G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.930e-6
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 TVEALGSLSVDTTLAYSLERRVSALEGVRMSDQDICQ 111
            T EAL SL+VDT L+ SLERRV+ALEGVR SDQDICQ
Sbjct:  105 TREALTSLAVDTALSSSLERRVTALEGVRASDQDICQ 141
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5851.14308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDY4_ECTSI3.750e-7785.06Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K6V9_9PHAE3.790e-3881.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6G1_9PHAE1.930e-678.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5851contigL-elsbetiae_contig5851:1506..5203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.7
Seed ortholog evalue1.2e-67
Seed eggNOG ortholog2880.D8LDY4
KEGG koko:K10395
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons4
Model size527
Cds size525
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5851.14308.1prot_L-elsbetiae_contig5851.14308.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5851 1506..5203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816631.354157-CDS-L-elsbetiae_contig5851:1505..16971622816631.354157-CDS-L-elsbetiae_contig5851:1505..1697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 1506..1697 -
1691683698.5030057-CDS-L-elsbetiae_contig5851:1505..16971691683698.5030057-CDS-L-elsbetiae_contig5851:1505..1697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 1506..1697 -
1622816631.370161-CDS-L-elsbetiae_contig5851:2713..28181622816631.370161-CDS-L-elsbetiae_contig5851:2713..2818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 2714..2818 -
1691683698.5142932-CDS-L-elsbetiae_contig5851:2713..28181691683698.5142932-CDS-L-elsbetiae_contig5851:2713..2818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 2714..2818 -
1622816631.3815246-CDS-L-elsbetiae_contig5851:4277..43941622816631.3815246-CDS-L-elsbetiae_contig5851:4277..4394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 4278..4394 -
1691683698.5234544-CDS-L-elsbetiae_contig5851:4277..43941691683698.5234544-CDS-L-elsbetiae_contig5851:4277..4394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 4278..4394 -
1622816631.3922145-CDS-L-elsbetiae_contig5851:5092..52031622816631.3922145-CDS-L-elsbetiae_contig5851:5092..5203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 5093..5203 -
1691683698.5324605-CDS-L-elsbetiae_contig5851:5092..52031691683698.5324605-CDS-L-elsbetiae_contig5851:5092..5203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5851 5093..5203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5851.14308.1

>prot_L-elsbetiae_contig5851.14308.1 ID=prot_L-elsbetiae_contig5851.14308.1|Name=mRNA_L-elsbetiae_contig5851.14308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
TVEALGSLSVDTTLAYSLERRVSALEGVRMSDQDICQLAQRMVELQSALD
PARLSKRNKSSTHLLDAEKNRNACQAAYMRALKRLKEQLKHWREACGCGF
DPSLLSDVARQALNDLRRGGGAGAKIEHILPHLDSGISTAGGGGGGGGSV
ANSRAASPELLGSKHIAPRLSQDTG
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mRNA from alignment at L-elsbetiae_contig5851:1506..5203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5851.14308.1 ID=mRNA_L-elsbetiae_contig5851.14308.1|Name=mRNA_L-elsbetiae_contig5851.14308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3698bp|location=Sequence derived from alignment at L-elsbetiae_contig5851:1506..5203- (Laminarionema elsbetiae ELsaHSoW15)
ACTGTTGAGGCGTTGGGCTCCCTATCCGTCGACACTACCCTGGCGTACTC
CCTGGAGCGGAGAGTTTCTGCCCTCGAGGGCGTGAGAATGTCTGACCAAG
ATATCTGCCAGGTATGCGTTTTTGTTTTTGTAAGCATAATTTGTTTTTTT
GCCGGACAACTAAGCGCCCCGAGTTGTTGGTGTTGTTGGTGTTGTTGTTG
TTGTCGCCTTCACACGTTAAAAATCGTTCCGATCTCTCTATCCAGTGCCA
CCATATGTGTGTCAGTACTATAATCCAACACCGACGCGGTCGATTCCAGC
GGCCACAGGATTAACTCACCCTAAAAGGGTATGGATAATATATTATAGTA
AATGGACCCCCGAGATGCAGATGTATGTGCATATTTACCTGACGAGGGGT
CTCCTTAGGGTTCGGTGCCTGCAAAAGTAGGAGTGGGTGTGTTTGAATCA
CTTCTTTGTTTTTGTTTTTTCAACAAACCTCTCCATCTCTGCAACACTCC
GTCCGACCTGCGCTTGCGTGCGTACCTGTGCGATCGTCGATGTGTCTTCC
GCGCTCTGCCGTGTTTTTTTAACATTCGCCACCCCGTACATTTTCTTTCT
CCGGGTTCGCGTGTGCTGTTTCGTCTCTCTCTCTCGTTATCTGTCTCTCT
GTCTCTCTCTATCTCTATCTCTATACCTCTCTGTATCTGTCTGTCTCTCT
CTCTCTGTGTGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTC
TCTCTTTGCGCCATGTGTTTTTTCGCGTTCTCTGTGTTATGCGTTGCCGC
GCACCGCAGCTGGCGCAGAGGATGGTCGAGCTGCAATCCGCCCTCGACCC
CGCGCGGCTGAGCAAGAGGAACAAGTCTTCGACGCACCTCCTCGACGCGG
AGAAGAACCGTAACGCCTGCCAGGCTGTGAGTGAAAACCCCTGTATTTAC
AAGGTTGCCGGCCTTCGGTCTTTTTATTTTATTTATTGTAAATGTCTTTC
TCTTCTGTGCTCTTTTCGTTCCTTGCTCTCGGTACGTGGTAGGCGAAGAC
CGGAACCGTGTGTGTGTGTGAGTGTACTTGTATGCAGTACATAGGTTTTG
TGTTCTGATTGCGTTCGTAGCTGGCGCCGCCACCATATGGTTGGTCTTGC
CGGATATCCCCTGCGTCGCGTTCCGTAGTAGGTGACACGATATTCCACAC
CCCCTGGGCCGAATTTGAGAGCGCCATTGCTCCGTAGCGAAGAAGGTGCC
TGCACCGAATGACACATTTTCGGACAGCCCTCGCCCAGATCTTTCCAACG
CACCCTGTGTCGGCACTGGCACTCTTCTTGCTGGGGAGGAATCGAGCTAT
GATAATCTGTCCGGGGGGGGGGGGGGGGGGGGGGGGTTGGGGGAATCCCC
CCCGGCCGGGTGGGGGTGTCGTTTTTTTGGTGGGTGGGGGGGTGTTTTTG
TGTGTTTGGTTTTNNNNNNNNNNTATCTTTCCCTCCCCCCCTGTCGCGGC
TCCTTTTCCGTGTGGGGGGGGGGAGGATATCGCTGTTTGGTTGGGGGGGG
GGGGGGGGGGGGGGGGGGGTGTCTTGTGTGAATCACCCACGGCAGTGTGT
AGCTGTCGTATTGTTCGTGTATGTAGTAGCGTTTTGGTTGCTGATGCTCT
TGCTGTTGCTGCTGCGGGTGGGGTGTGCCCAGTGCTTACGTTGTTTTGTC
TTCGTCGTGATCCACCGTGTACACACCGGTTAGCTGGCTGACCAGGATCG
CCTTCGCGAATAAATAATAGACAGGGGCTCCGCAACCGTAACCGTAACCC
TAACCTAACCCAAACCGACCCCCCATTGCAACAGTAGCCGTTCACGTGCT
TTATCCCATACGATATTATTTATTGTAGTAGAACCTGCGGCGGCTGCTTA
CTGACTGGCCAGCGGAAGTATACACGCCAGTCTCAACGGTGTTGAACTGA
AAAAAAAAAACGAACGTCTTGCGTCGCGGTCAGTGGGTGACACGAGCATT
TGACAAGTGGAGCGTTTTGCTCTGAACAATCCTGGAAAGTTCTTCTCGCT
TTTTGCACTTTGTGCGGCTCCGACCGTGTTCTACTCGCTGCTGCTGTACC
GGCCGGCACACACGAGATCGGTGGAAACGTGTTGGATGCATTTTGCAGCA
ACATTGCGCACAATGCGAATGGTGCTGATTTGTCCTTTACTTCGAAGTAT
ATGTGTTTTGCGAGCGAGAGCTTGTTGCGCGCTGCTTCTCCGAGGGGTGC
GCACGCACCTGCGGGATGAAGCGTGGGCTGCTTGGTTCGTTGACTTTTCG
TTTCTCCTGGCGTTGCTAATAACGGCTTGCTTTGTTTGGGCGCGTCGTGC
GTGTTTCTGTTGTGCATTCGTCGGGTTCATCGCAGGCATACATGCGCGCG
CTGAAGCGGCTGAAGGAGCAGCTGAAGCACTGGAGGGAGGCGTGCGGTTG
TGGTTTCGACCCTTCGCTGCTCAGCGACGTCGCCCGCCAGGTGAAAGTTT
GTTTTTATTTTCTGTGTTGCACTCGCTGGTCCGCAGCGGCCTACGCAGCT
TTTTACTGGAAGAAATCATATGGGATAAAGTATGGAAATGGCTAATGGGG
GGTCGGTTTGGGGTTAGGCTTAGGCTTAGGCTTAGGCTTAGGGTTTACGG
AACCGCTGTCTATCATTTCCTATATAGACAGAAATTACAGAGATTCTTTG
CGGAGGCGTTCAGTCCACTTGCTGCTGCTGCTTCTGTTGCGGCTACTGCT
GCTGCTGCGGCTGCGGCGGCTGCTGCTGCTACCGCTACCACCGCCGCCGA
AGGAGTTTACGAAGTTCGTCGATGTGTCCCGCTGCCGCTTGATTGATGGC
GCCGCTTGCGCCCTGTTGGAGCGCCGTTTAATTGCGTGATGTTTTGGTTG
GTTCTTGGCTATGTAACGCCGAACGTGCCTGAGGCCTCTCTCGCTCTGTT
TGTCGCGGCCGCTGTCTTTCGACGGTGCTGAGCCGCATGGGCCTTCGCGT
ACCGTCCTGCATATTGTATATAGTTGCGAGGTCGGTCGCAGCCCAGCTAG
CATTCGCCCGATACGCGTGTGGGCGGCGGGGTTGGTTGGTTGGTTGCCTT
GGTTCTTCCAACGAACTAATATGACACCCCCCTTTCGTGTCAGTACTGTT
TACACCTCGATAATATGGTAGATCTTTGGGACTACGCCATATGTATGCGC
TCTCGATGATTGGTCAAAGCGTGTGTGCCGGACCACATTCTGACCTGCGG
ACCACGCGTCCGCAAAAGCGGCGCAGCCGCGTTCCCGGCGATTTGTCGGC
CCCGCGGCCCCGATTGGACGTCGGTGCGGGCTAGGATTAGGGTTTAGGGT
TGGGTGGGTCGTCGGTCACGTGTATGTTGTCTTTGGTTCTGAGTGTGAAC
CATCTGCAAAACATGGTGTTGGCAGTTAAGAGCTATTGTCAGTTTGTAAC
CCAACCTCCTTTGTGTACCTTTGCTTCGCTTAAAACCAAACTTCCACCCC
GACCAGGCTCTAAACGATCTCCGGAGGGGCGGCGGAGCAGGGGCGAAGAT
TGAGCACATCCTCCCGCACCTCGACAGCGGCATCAGCACCGCCGGCGGTG
GCGGCGGCGGGGGGGGGTCCGTCGCGAATTCTCGCGCGGCCAGCCCCGAA
CTGCTCGGCAGCAAACACATCGCTCCTCGCCTCTCGCAAGACACCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5851:1506..5203-

>mRNA_L-elsbetiae_contig5851.14308.1 ID=mRNA_L-elsbetiae_contig5851.14308.1|Name=mRNA_L-elsbetiae_contig5851.14308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig5851:1506..5203- (Laminarionema elsbetiae ELsaHSoW15)
ACTGTTGAGGCGTTGGGCTCCCTATCCGTCGACACTACCCTGGCGTACTC
CCTGGAGCGGAGAGTTTCTGCCCTCGAGGGCGTGAGAATGTCTGACCAAG
ATATCTGCCAGACTGTTGAGGCGTTGGGCTCCCTATCCGTCGACACTACC
CTGGCGTACTCCCTGGAGCGGAGAGTTTCTGCCCTCGAGGGCGTGAGAAT
GTCTGACCAAGATATCTGCCAGCTGGCGCAGAGGATGGTCGAGCTGCAAT
CCGCCCTCGACCCCGCGCGGCTGAGCAAGAGGAACAAGTCTTCGACGCAC
CTCCTCGACGCGGAGAAGAACCGTAACGCCTGCCAGGCTCTGGCGCAGAG
GATGGTCGAGCTGCAATCCGCCCTCGACCCCGCGCGGCTGAGCAAGAGGA
ACAAGTCTTCGACGCACCTCCTCGACGCGGAGAAGAACCGTAACGCCTGC
CAGGCTGCATACATGCGCGCGCTGAAGCGGCTGAAGGAGCAGCTGAAGCA
CTGGAGGGAGGCGTGCGGTTGTGGTTTCGACCCTTCGCTGCTCAGCGACG
TCGCCCGCCAGGCATACATGCGCGCGCTGAAGCGGCTGAAGGAGCAGCTG
AAGCACTGGAGGGAGGCGTGCGGTTGTGGTTTCGACCCTTCGCTGCTCAG
CGACGTCGCCCGCCAGGCTCTAAACGATCTCCGGAGGGGCGGCGGAGCAG
GGGCGAAGATTGAGCACATCCTCCCGCACCTCGACAGCGGCATCAGCACC
GCCGGCGGTGGCGGCGGCGGGGGGGGGTCCGTCGCGAATTCTCGCGCGGC
CAGCCCCGAACTGCTCGGCAGCAAACACATCGCTCCTCGCCTCTCGCAAG
ACACCGGCGCTCTAAACGATCTCCGGAGGGGCGGCGGAGCAGGGGCGAAG
ATTGAGCACATCCTCCCGCACCTCGACAGCGGCATCAGCACCGCCGGCGG
TGGCGGCGGCGGGGGGGGGTCCGTCGCGAATTCTCGCGCGGCCAGCCCCG
AACTGCTCGGCAGCAAACACATCGCTCCTCGCCTCTCGCAAGACACCGGC
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