mRNA_L-elsbetiae_contig5850.14307.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5850.14307.1
Unique NamemRNA_L-elsbetiae_contig5850.14307.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5850.14307.1 vs. uniprot
Match: D7FQ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 3.920e-52
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1
Query:    1 KVPGIAVRGAEILAEGEGDDKVTNTYQLIGKFLALRGPNDAKHEVDSVEHCDKFWYWLQSKGINSNRSGIVNAIAEKVNTWIPG 252
            +VPGIA RGAEILA+GEGDDKVTNTYQLIGKFLALRGP+   HEVDSVEHCDKFWYWLQ+KGINSNRSGIVNAIAEKVNTWIPG
Sbjct:   32 EVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPG 115          
BLAST of mRNA_L-elsbetiae_contig5850.14307.1 vs. uniprot
Match: A0A835Z4N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.580e-34
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    1 KVPGIAVRGAEILAEGEGDDKVTNTYQLIGKFLALRGPNDAKHEVDSVEHCDKFWYWLQSKGINSNRSGIVNAIAEKVNTWIPG 252
            +VPGI     + LA GEG +KV NTYQLIGKFL+L+G +D+   + ++EHCD+FWYWL+  GI+S RSGIVNAIAEK NTWIPG
Sbjct:   33 EVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPG 116          
BLAST of mRNA_L-elsbetiae_contig5850.14307.1 vs. uniprot
Match: A0A7S2V4V0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.550e-31
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 1
Query:    1 KVPGIAVRGAEILAEGEGDDKVTNTYQLIGKFLALRGPNDAKHEVDSVEHCDKFWYWLQSKGINSNRSGIVNAIAEKVNTWIPG 252
            +VPGI    A  LA  + D+ +TN++QLIGKFL ++GP+  + EVD V HC+KFWY+L+SKG+NS+RSGIV+AIAEK+NT IPG
Sbjct:   31 QVPGIGKAAAAALASADDDEPITNSFQLIGKFLLMKGPDTEEGEVDCVMHCNKFWYYLKSKGVNSHRSGIVHAIAEKINTMIPG 114          
BLAST of mRNA_L-elsbetiae_contig5850.14307.1 vs. uniprot
Match: K0QZN8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZN8_THAOC)

HSP 1 Score: 113 bits (282), Expect = 1.800e-30
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    1 KVPGIAVRGAEILAEGEGDDKVTNTYQLIGKFLALRGPNDAKHEVDSVEHCDKFWYWLQSKGINSNRSGIVNAIAEKVNTWIPG 252
            +VPGI    A+ LAEGE D+ +TNTYQLIGKFL L+GP+   ++V+S+EHC+KFWYWLQ K I+++RS IV AIA KVN  +PG
Sbjct:   32 EVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDNKVESMEHCEKFWYWLQDKQISAHRSAIVKAIAMKVNGLLPG 115          
BLAST of mRNA_L-elsbetiae_contig5850.14307.1 vs. uniprot
Match: B8CF00_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CF00_THAPS)

HSP 1 Score: 111 bits (278), Expect = 4.590e-30
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    1 KVPGIAVRGAEILAEGEGDDKVTNTYQLIGKFLALRGPNDAKHEVDSVEHCDKFWYWLQSKGINSNRSGIVNAIAEKVNTWIPG 252
            +VPGI    A+ LA  EG++ +TNTYQLIGKFL L+GP+   ++V+S EHC+KFWYWLQ+ GI+++RS IV AIA+KVN  +PG
Sbjct:   15 EVPGIGPAAAKKLANVEGEEGITNTYQLIGKFLMLKGPDTDTNKVESFEHCEKFWYWLQAMGISAHRSAIVKAIAQKVNGLLPG 98          
BLAST of mRNA_L-elsbetiae_contig5850.14307.1 vs. uniprot
Match: A0A7S1ZJR7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJR7_TRICV)

HSP 1 Score: 108 bits (271), Expect = 1.530e-28
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 KVPGIAVRGAEILAEGEGDDKVTNTYQLIGKFLALRGPNDAKHEVDSVEHCDKFWYWLQSKGINSNRSGIVNAIAEKVNTWIPG 252
            +VPGI    A+ LAEG+ DD+VTNT+QLIGKF+ L+GP+D +H+V   EH  KFW+WL  K I S+RS IV AIAEK+N  +PG
Sbjct:   53 EVPGIGPAAAKRLAEGDDDDRVTNTWQLIGKFMMLKGPDDDEHKVGPGEHMQKFWHWLAEKEIKSHRSAIVKAIAEKMNQMMPG 136          
BLAST of mRNA_L-elsbetiae_contig5850.14307.1 vs. uniprot
Match: A0A7S2MQ62_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQ62_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.600e-28
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    4 VPGIAVRGA----EILAEGEGDDKVTNTYQLIGKFLALRGPNDAKHEVDSVEHCDKFWYWLQSKGINSNRSGIVNAIAEKVNTWIPG 252
            VPGI    A    EI  E +  D++TNTYQLIGKFL L+GP++  H+V+S+EH +KFW++L+ KGI+S+RSGIV AIAEKVNT IPG
Sbjct:   41 VPGIGPAAARKLGEIGDEEKDSDRITNTYQLIGKFLMLKGPDEDGHKVESMEHMEKFWWFLKEKGISSHRSGIVRAIAEKVNTMIPG 127          
BLAST of mRNA_L-elsbetiae_contig5850.14307.1 vs. uniprot
Match: A0A6U3Z2B1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Z2B1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.700e-28
Identity = 52/87 (59.77%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    4 VPGIAVRGAEILAE-GEGD---DKVTNTYQLIGKFLALRGPNDAKHEVDSVEHCDKFWYWLQSKGINSNRSGIVNAIAEKVNTWIPG 252
            VPGI    A+ L + G+G+   D+VTNTYQLIGKFL L+GP++  ++V+SVEH +KFW++L+ KGI+S+RSGIV AIAEKVNT +PG
Sbjct:   32 VPGIGPAAAKKLGQIGDGETEFDRVTNTYQLIGKFLMLKGPDEDGNKVESVEHMEKFWWYLKQKGISSHRSGIVRAIAEKVNTMLPG 118          
BLAST of mRNA_L-elsbetiae_contig5850.14307.1 vs. uniprot
Match: A0A7S2UIU1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIU1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 5.290e-28
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 KVPGIAVRGAEILAEGEG-DDKVTNTYQLIGKFLALRGPNDAKHEVDSVEHCDKFWYWLQSKGINSNRSGIVNAIAEKVNTWIPG 252
            +VPGI  + AE LA  +  DD++TNTYQLIGKFL L+GP+D +++V S++H +KFWY+L+ +GI S+RS IV AIAEK+N +IPG
Sbjct:   32 EVPGIGPKAAEKLAASDDTDDRITNTYQLIGKFLMLKGPDDDENKVASMQHMEKFWYYLKERGIASHRSAIVKAIAEKMNMFIPG 116          
BLAST of mRNA_L-elsbetiae_contig5850.14307.1 vs. uniprot
Match: A0A7S2R0A3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0A3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.160e-27
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 KVPGIAVRGAEILAEGEGD-DKVTNTYQLIGKFLALRGPNDAKHEVDSVEHCDKFWYWLQSKGINSNRSGIVNAIAEKVNTWIPG 252
            +VPGI       LA G+ + D++TNT+QLIGKFL L+GP++   ++D +EH +KFWYWL+ KGI S+RS IV AI EK+NT IPG
Sbjct:   33 EVPGIGPAAKRALAGGDDESDRITNTFQLIGKFLMLKGPDEDDMKIDCMEHMEKFWYWLKQKGIKSHRSAIVKAIGEKINTMIPG 117          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5850.14307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ44_ECTSI3.920e-5290.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4N7_9STRA3.580e-3463.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4V0_9STRA2.550e-3159.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K0QZN8_THAOC1.800e-3060.71Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8CF00_THAPS4.590e-3058.33Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1ZJR7_TRICV1.530e-2858.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2MQ62_9STRA2.600e-2859.77Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U3Z2B1_9STRA2.700e-2859.77Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2UIU1_9STRA5.290e-2857.65Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2R0A3_9STRA1.160e-2755.29Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5850contigL-elsbetiae_contig5850:9546..10266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue3.5e-39
Seed eggNOG ortholog2880.D7FQ44
Hectar predicted targeting categoryother localisation
EggNOG OGs2ARS8@1,2RZN0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816631.2991364-CDS-L-elsbetiae_contig5850:9545..96711622816631.2991364-CDS-L-elsbetiae_contig5850:9545..9671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5850 9546..9671 -
1691683698.46918-CDS-L-elsbetiae_contig5850:9545..96711691683698.46918-CDS-L-elsbetiae_contig5850:9545..9671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5850 9546..9671 -
1622816631.311812-CDS-L-elsbetiae_contig5850:10134..102661622816631.311812-CDS-L-elsbetiae_contig5850:10134..10266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5850 10135..10266 -
1691683698.487006-CDS-L-elsbetiae_contig5850:10134..102661691683698.487006-CDS-L-elsbetiae_contig5850:10134..10266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5850 10135..10266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5850.14307.1prot_L-elsbetiae_contig5850.14307.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5850 9546..10266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5850.14307.1

>prot_L-elsbetiae_contig5850.14307.1 ID=prot_L-elsbetiae_contig5850.14307.1|Name=mRNA_L-elsbetiae_contig5850.14307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
KVPGIAVRGAEILAEGEGDDKVTNTYQLIGKFLALRGPNDAKHEVDSVEH
CDKFWYWLQSKGINSNRSGIVNAIAEKVNTWIPGE*
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mRNA from alignment at L-elsbetiae_contig5850:9546..10266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5850.14307.1 ID=mRNA_L-elsbetiae_contig5850.14307.1|Name=mRNA_L-elsbetiae_contig5850.14307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=721bp|location=Sequence derived from alignment at L-elsbetiae_contig5850:9546..10266- (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGCCCGGCATCGCGGTAAGAGGGGCCGAAATTCTGGCGGAGGGGGA AGGTGATGACAAGGTTACGAACACGTACCAGCTGATCGGGAAGTTCTTGG CTCTCCGAGGCCCCAACGACGCGAAGCACGAGGTGGGTGGGTGGGTGGAT GCCGTGGCGAGAAAAAGATGCACCCGCGAAAGTTGCATGGAAATCACTGC TGTTACACGGGAGCGTTTGCTAGAAATTCATCATGCCGTCGACGGTTGCG ATGTTGATTTCAGAGATATCATAGCAGCAGCAGCAATAGCAGCAGCAACA GCACCAGTTTGTCCCGTTGGGCGCCGAGTGGCCAAGGACGATCATCACGA TATGCCGTTCGCGAGGCACGTGTTGTTGGCACGCGAGAATGTCCCTCGCG TCTGCGGCGCCAGCCGATCGCGCTGCCGTATGTTTTACTCCCATGATACG TGTCTCGGTGTCCCAATAACGAGCGATATGCTTCACTTACATACTTCAAT GTCAGCCGTGCGGGTTGGGCTACCTTCTTACCGTCCCAAGCGCTCTCCTG TGTACGCGTCTGTGGATTATTTTTCGTGTCTCGCTGCTTACAAAGGTGGA TTCGGTGGAGCACTGCGACAAGTTTTGGTACTGGCTGCAGTCCAAGGGCA TCAACTCGAACCGGTCTGGCATCGTCAATGCCATCGCAGAAAAGGTCAAC ACATGGATCCCTGGTGAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5850:9546..10266-

>mRNA_L-elsbetiae_contig5850.14307.1 ID=mRNA_L-elsbetiae_contig5850.14307.1|Name=mRNA_L-elsbetiae_contig5850.14307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig5850:9546..10266- (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGCCCGGCATCGCGGTAAGAGGGGCCGAAATTCTGGCGGAGGGGGA
AGGTGATGACAAGGTTACGAACACGTACCAGCTGATCGGGAAGTTCTTGG
CTCTCCGAGGCCCCAACGACGCGAAGCACGAGAAGGTGCCCGGCATCGCG
GTAAGAGGGGCCGAAATTCTGGCGGAGGGGGAAGGTGATGACAAGGTTAC
GAACACGTACCAGCTGATCGGGAAGTTCTTGGCTCTCCGAGGCCCCAACG
ACGCGAAGCACGAGGTGGATTCGGTGGAGCACTGCGACAAGTTTTGGTAC
TGGCTGCAGTCCAAGGGCATCAACTCGAACCGGTCTGGCATCGTCAATGC
CATCGCAGAAAAGGTCAACACATGGATCCCTGGTGAGTAAGTGGATTCGG
TGGAGCACTGCGACAAGTTTTGGTACTGGCTGCAGTCCAAGGGCATCAAC
TCGAACCGGTCTGGCATCGTCAATGCCATCGCAGAAAAGGTCAACACATG
GATCCCTGGTGAGTAA
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