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Homology
BLAST of mRNA_L-elsbetiae_contig5849.14303.1 vs. uniprot
Match: D7G9B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B7_ECTSI) HSP 1 Score: 142 bits (359), Expect = 1.370e-34 Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = 2
Query: 80 VKENLKEAADVHWLNSLEGGNACLLVDCYRDLSDGVALEEALILTEGLSAPLPSSAHPADRLRRALAAVEESRGRSAMPPRLLQPVFSQHVCRGDPSACGHLVAFLRQLNDLKNRSG 430
+ E L+EA DV+WLNSLEGG+ACLLVD Y DL+DGVA+EEA +L EG S+ + RLR+ALAAVE+ RG A+P RLLQP F VCRG+ SACG LVAFL++LN+L N +G
Sbjct: 1 MAEELREAGDVYWLNSLEGGHACLLVDSYGDLADGVAVEEAFLLIEGYSSACSDNIGATGRLRKALAAVEKRRGTCAVPQRLLQPTFPLRVCRGEASACGELVAFLKRLNELNNGAG 117
BLAST of mRNA_L-elsbetiae_contig5849.14303.1 vs. uniprot
Match: A0A6H5K8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8B2_9PHAE) HSP 1 Score: 113 bits (283), Expect = 3.980e-23 Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 2
Query: 65 LPAGRVKENLKEAADVHWLNSLEGGNACLLVDCYRDLSDGVALEEALILTE-GLSAPLPSSAHPADRLRRALAAVEESRGRSAMPPRLLQPVFSQHVCRGDPSACGHLVAFLRQLNDLKNRSG 430
LP + E L+EA DV+WLNSLEGG+ACLLVD Y DL+DGVALEEA +L E G + + PA+ AV S ++ +PP QP FS VCRG+ +ACG LVAFL++LN+L N +G
Sbjct: 9 LPGSCMAEELQEAGDVYWLNSLEGGHACLLVDTYGDLADGVALEEAFLLIEVGRTVASVAQTTPAESAPAPPQAVT-SFSQNNLPPN--QPTFSLRVCRGEANACGELVAFLKRLNELNNGAG 128
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1339 |
| Cds size | 1335 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816630.650095-CDS-L-elsbetiae_contig5849:6983..7991 | 1622816630.650095-CDS-L-elsbetiae_contig5849:6983..7991 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5849 6984..7991 - |
| 1691683697.9466443-CDS-L-elsbetiae_contig5849:6983..7991 | 1691683697.9466443-CDS-L-elsbetiae_contig5849:6983..7991 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5849 6984..7991 - |
| 1622816630.662363-CDS-L-elsbetiae_contig5849:8563..8677 | 1622816630.662363-CDS-L-elsbetiae_contig5849:8563..8677 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5849 8564..8677 - |
| 1691683697.955924-CDS-L-elsbetiae_contig5849:8563..8677 | 1691683697.955924-CDS-L-elsbetiae_contig5849:8563..8677 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5849 8564..8677 - |
| 1622816630.674907-CDS-L-elsbetiae_contig5849:9500..9616 | 1622816630.674907-CDS-L-elsbetiae_contig5849:9500..9616 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5849 9501..9616 - |
| 1691683697.965174-CDS-L-elsbetiae_contig5849:9500..9616 | 1691683697.965174-CDS-L-elsbetiae_contig5849:9500..9616 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5849 9501..9616 - |
| 1622816630.6886022-CDS-L-elsbetiae_contig5849:10033..10130 | 1622816630.6886022-CDS-L-elsbetiae_contig5849:10033..10130 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5849 10034..10130 - |
| 1691683697.9802814-CDS-L-elsbetiae_contig5849:10033..10130 | 1691683697.9802814-CDS-L-elsbetiae_contig5849:10033..10130 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5849 10034..10130 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816630.6999178-UTR-L-elsbetiae_contig5849:10130..10134 | 1622816630.6999178-UTR-L-elsbetiae_contig5849:10130..10134 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5849 10131..10134 - |
| 1691683697.9938471-UTR-L-elsbetiae_contig5849:10130..10134 | 1691683697.9938471-UTR-L-elsbetiae_contig5849:10130..10134 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5849 10131..10134 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5849.14303.1 >prot_L-elsbetiae_contig5849.14303.1 ID=prot_L-elsbetiae_contig5849.14303.1|Name=mRNA_L-elsbetiae_contig5849.14303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=445bp
MLPIKREDGEYDGRLQAPRLLPAGRVKENLKEAADVHWLNSLEGGNACLL
VDCYRDLSDGVALEEALILTEGLSAPLPSSAHPADRLRRALAAVEESRGR
SAMPPRLLQPVFSQHVCRGDPSACGHLVAFLRQLNDLKNRSGGAGGSVGR
KSKSSRRGAGDSCSETRSAGSHAKNAASTRIHENARNNVRTGSSDKSNPG
PVPCKSSASARRRTRSTNTSCARPNGSRLFGHGGVTSRPPQPTCARSVPS
RTSSIERFCPSPPQLPATLQPPPPPPPPPPVPLPRSFAVRRRPRKRLVET
TQGLAANAGKENGRGHGGAAEIGPLRLNAAAAAAPAATSSVAGSWRRATT
AAPAASRKRTTAVLSRPEWDASTTCERAARPASNPATKDRGSAAAPGAGH
GVVGLSLHVDKPDDRFRRADGASEDVVTPRAAGGVGGAGAGRKRA back to topmRNA from alignment at L-elsbetiae_contig5849:6984..10134- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5849.14303.1 ID=mRNA_L-elsbetiae_contig5849.14303.1|Name=mRNA_L-elsbetiae_contig5849.14303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3151bp|location=Sequence derived from alignment at L-elsbetiae_contig5849:6984..10134- (Laminarionema elsbetiae ELsaHSoW15)
AGCTATGCTTCCGATAAAGAGAGAGGACGGGGAGTATGACGGGCGGCTAC
AAGCACCGCGCCTTCTACCGGCTGGCCGCGTCAAGGAGAACCTGAAGGAA
GGTACAGTAGCTGGGTGTTTCGGCGGCACGCCTGGGACTATCTCCTCTGC
CCTGTTGCATCGGTTGCCTTCTCCCCCAACAATACAAGGTCGAAACACGA
AAAACAGTAGCTGCGACGCGGTTTACTGTGGCGGTACATCCACTTGCTGT
CACCTCTTTAGGGCAACCAGTAAAGACGCGGAAGAGCCGGGAAGAGCCCC
AGGGGCCCCGCCCGTCTAACTTCGGTTTCTGGAATCAACCCCTGTGAAAT
TGTTTCCAATCGCCCCTTTTTGTTTACCTTTTCGGAGGTAACACTAAGTA
ACGATCCGCGCTAATTTACCTAATTTCCGCTGCGGCTGCATTTGATGACG
TTGTTGATGTTGCCACCGCCGCCACCCGCCTTGTTCTTTGCTTCTGTGCT
ATTAATATGCTGGACCAGCCGCAGACGTGCACTGGCTAAACTCTCTCGAA
GGCGGAAACGCATGCCTTCTGGTGGACTGTTACCGAGACCTCTCCGACGG
CGTGGCTTTGGAAGAGGCGTTAATTCTGACCGAGGTCGGTCCCCTTTCGG
CGTTTTCAAGAACTCTGTGCGGTGTTTGCAACCCCCGCCGTTTTAGGAAT
GAGAGTGGTTGTATCGGGGGCTAAAACTGAAACGGTGCCCTCCAGCGGAC
CTCGTCGGGGATCGTGTGTTCACGGCCCCGGATCCATCGTATCTCTCTGT
ACTCCGTCCGTGTTAAATCGGCTTACATGGTCATCCTTCCTACCACAATT
GACGCCCCTGCCGAGGCACGCCCTCGAATATAGCCTCGGCTGTGAGGTAT
GTATGTATGTATGTGTATGTTGTCTTCACATTAAAAACCGTTCCGATCTC
TCCATCCAGTACCTTCTCAATGTCCGTACTAATCCAACACTTGATGCGGT
CAATTCCCGTGTTCACAGGCTAACTTATACCTAAGAAAAGGTACACGAAA
AATAAAATGGACCCGAAGGGCCAGCAAAGCAATAATATATATAACATATA
TCGAGTCTGGAGCCCTTCGCTCCCCTCTACACGCTATGTGAGGTAAAAAC
AAAACTGGAACAACCACGTATCTATAGCCTTTGGTTTTCTCGGGTCAAAA
CCTTGAAAACTATGTACGGCACACTGAACAATATTTCTACGCTGGCGAGA
TCAATCGACGTCGGATCGTTTCGGAATTGATCGCATGGATAACCGCCAGC
CGTCATGCAAGAAAACTTAGGTGGAGTACTCAGTACCGACCACCTTATCT
GCTTTACCGATGAGGGCCGGCGTACAATCTTGGCTGTTGGTGAGGTATCG
TTGTTATAATATTTCTTTGTGGTGGCGTTCGCGCTCGCGTTGCCGCTTCG
GTTGCAGGGCCTGTCCGCCCCGCTTCCAAGCTCCGCCCACCCTGCCGATC
GCCTACGAAGAGCCTTGGCGGCCGTGGAAGAGAGTAGAGGTCGATCGGCG
ATGCCTCCGAGGCTGCTGCAGGTAAATGTCTCCGTCGTGTTCGTTTCAGG
GTCGTGTTTTTCGCATACGATATACTGCTGTCAATCAGCTTCTGCTCGGG
ACCGGTAAGCACCACACTGCCCAGCTTTAGTTCTTCGTAAAGCGTGCGTA
TGTAGGCGTTTCAACATGCTCGGGTCCTTCGTTACACGGGTGCCAAGGCA
ACTGCTCGCAATAATAACATCTAGGGCAGGCACCGCAGGAGTGGATCCAC
CCCCCCCCTCTTGTGTGACCGCGGTTGGGTCGTCTAGCTAGTCGTAGTAG
AGTATGGGGGCCAGTGGGGCAGACGACGAAAATGCCAGTAATGGGAGGAG
GAGAAAACAAATTAAGCGTTATTTTGCGACCCAGATGTTTTCCCCTCCTC
ATCTACTGTCGTCAGTTCCCAGCATATGTGATCCTCGTTGGGTGGTCGTA
GGCTTCGGCGGCTACGCTCCTCTGTCCAGAGCATGGCAAAACATTCACCT
GGGGCGGAGGCGAGTTTCCGGAAACCCTGCGTTAACGTTTCGTCCCCCTG
TTTGCGCGATTTTTTCTCGTCCCTCCGATGCGATCACTCCCAGCCGGTCT
TCTCGCAGCACGTGTGCCGAGGAGACCCATCTGCCTGCGGTCACCTGGTG
GCGTTTCTGAGACAGCTGAACGACCTCAAGAACAGGAGCGGCGGCGCAGG
CGGAAGTGTCGGACGCAAGAGCAAGAGCAGCAGGAGGGGTGCCGGCGACA
GCTGCAGCGAGACTCGCAGCGCCGGCAGCCACGCCAAGAACGCTGCTAGC
ACCCGCATCCACGAGAATGCCAGGAACAACGTCAGGACTGGTAGCAGCGA
CAAGAGCAACCCCGGGCCAGTGCCCTGCAAATCTTCAGCAAGTGCAAGAC
GCCGCACGAGAAGTACAAACACCTCTTGTGCGCGACCAAATGGCAGCCGC
CTTTTTGGTCACGGCGGGGTGACTAGCCGCCCTCCCCAACCAACCTGCGC
ACGAAGCGTTCCGTCACGCACAAGCTCAATAGAGCGATTTTGCCCTTCCC
CACCACAGCTGCCGGCGACATTGCAACCGCCACCGCCGCCGCCGCCGCCG
CCGCCAGTACCGCTTCCTCGATCGTTCGCAGTCCGGCGACGGCCGCGAAA
ACGGCTTGTGGAGACTACCCAGGGGCTCGCGGCAAATGCGGGAAAGGAAA
ACGGTCGAGGACACGGCGGCGCGGCCGAAATAGGCCCTCTCCGACTGAAC
GCTGCTGCTGCTGCTGCTCCTGCTGCGACTAGCTCGGTCGCGGGAAGCTG
GAGAAGAGCTACGACTGCGGCGCCGGCGGCGTCCAGAAAACGAACCACTG
CTGTGCTTTCACGCCCGGAATGGGATGCCTCCACGACATGTGAACGAGCG
GCTCGCCCGGCGAGCAACCCAGCGACTAAAGACAGAGGGTCGGCAGCGGC
GCCAGGAGCGGGGCACGGGGTGGTGGGCTTGTCTTTACATGTTGACAAAC
CCGATGACCGCTTCCGAAGAGCAGACGGGGCCTCGGAGGACGTCGTGACA
CCAAGGGCCGCGGGCGGGGTCGGCGGTGCGGGGGCTGGGCGGAAACGGGC
C back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5849:6984..10134- >mRNA_L-elsbetiae_contig5849.14303.1 ID=mRNA_L-elsbetiae_contig5849.14303.1|Name=mRNA_L-elsbetiae_contig5849.14303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2670bp|location=Sequence derived from alignment at L-elsbetiae_contig5849:6984..10134- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCCGATAAAGAGAGAGGACGGGGAGTATGACGGGCGGCTACAAGC
ACCGCGCCTTCTACCGGCTGGCCGCGTCAAGGAGAACCTGAAGGAAGATG
CTTCCGATAAAGAGAGAGGACGGGGAGTATGACGGGCGGCTACAAGCACC
GCGCCTTCTACCGGCTGGCCGCGTCAAGGAGAACCTGAAGGAAGCCGCAG
ACGTGCACTGGCTAAACTCTCTCGAAGGCGGAAACGCATGCCTTCTGGTG
GACTGTTACCGAGACCTCTCCGACGGCGTGGCTTTGGAAGAGGCGTTAAT
TCTGACCGAGCCGCAGACGTGCACTGGCTAAACTCTCTCGAAGGCGGAAA
CGCATGCCTTCTGGTGGACTGTTACCGAGACCTCTCCGACGGCGTGGCTT
TGGAAGAGGCGTTAATTCTGACCGAGGGCCTGTCCGCCCCGCTTCCAAGC
TCCGCCCACCCTGCCGATCGCCTACGAAGAGCCTTGGCGGCCGTGGAAGA
GAGTAGAGGTCGATCGGCGATGCCTCCGAGGCTGCTGCAGGGCCTGTCCG
CCCCGCTTCCAAGCTCCGCCCACCCTGCCGATCGCCTACGAAGAGCCTTG
GCGGCCGTGGAAGAGAGTAGAGGTCGATCGGCGATGCCTCCGAGGCTGCT
GCAGCCGGTCTTCTCGCAGCACGTGTGCCGAGGAGACCCATCTGCCTGCG
GTCACCTGGTGGCGTTTCTGAGACAGCTGAACGACCTCAAGAACAGGAGC
GGCGGCGCAGGCGGAAGTGTCGGACGCAAGAGCAAGAGCAGCAGGAGGGG
TGCCGGCGACAGCTGCAGCGAGACTCGCAGCGCCGGCAGCCACGCCAAGA
ACGCTGCTAGCACCCGCATCCACGAGAATGCCAGGAACAACGTCAGGACT
GGTAGCAGCGACAAGAGCAACCCCGGGCCAGTGCCCTGCAAATCTTCAGC
AAGTGCAAGACGCCGCACGAGAAGTACAAACACCTCTTGTGCGCGACCAA
ATGGCAGCCGCCTTTTTGGTCACGGCGGGGTGACTAGCCGCCCTCCCCAA
CCAACCTGCGCACGAAGCGTTCCGTCACGCACAAGCTCAATAGAGCGATT
TTGCCCTTCCCCACCACAGCTGCCGGCGACATTGCAACCGCCACCGCCGC
CGCCGCCGCCGCCGCCAGTACCGCTTCCTCGATCGTTCGCAGTCCGGCGA
CGGCCGCGAAAACGGCTTGTGGAGACTACCCAGGGGCTCGCGGCAAATGC
GGGAAAGGAAAACGGTCGAGGACACGGCGGCGCGGCCGAAATAGGCCCTC
TCCGACTGAACGCTGCTGCTGCTGCTGCTCCTGCTGCGACTAGCTCGGTC
GCGGGAAGCTGGAGAAGAGCTACGACTGCGGCGCCGGCGGCGTCCAGAAA
ACGAACCACTGCTGTGCTTTCACGCCCGGAATGGGATGCCTCCACGACAT
GTGAACGAGCGGCTCGCCCGGCGAGCAACCCAGCGACTAAAGACAGAGGG
TCGGCAGCGGCGCCAGGAGCGGGGCACGGGGTGGTGGGCTTGTCTTTACA
TGTTGACAAACCCGATGACCGCTTCCGAAGAGCAGACGGGGCCTCGGAGG
ACGTCGTGACACCAAGGGCCGCGGGCGGGGTCGGCGGTGCGGGGGCTGGG
CGGAAACGGGCCCCGGTCTTCTCGCAGCACGTGTGCCGAGGAGACCCATC
TGCCTGCGGTCACCTGGTGGCGTTTCTGAGACAGCTGAACGACCTCAAGA
ACAGGAGCGGCGGCGCAGGCGGAAGTGTCGGACGCAAGAGCAAGAGCAGC
AGGAGGGGTGCCGGCGACAGCTGCAGCGAGACTCGCAGCGCCGGCAGCCA
CGCCAAGAACGCTGCTAGCACCCGCATCCACGAGAATGCCAGGAACAACG
TCAGGACTGGTAGCAGCGACAAGAGCAACCCCGGGCCAGTGCCCTGCAAA
TCTTCAGCAAGTGCAAGACGCCGCACGAGAAGTACAAACACCTCTTGTGC
GCGACCAAATGGCAGCCGCCTTTTTGGTCACGGCGGGGTGACTAGCCGCC
CTCCCCAACCAACCTGCGCACGAAGCGTTCCGTCACGCACAAGCTCAATA
GAGCGATTTTGCCCTTCCCCACCACAGCTGCCGGCGACATTGCAACCGCC
ACCGCCGCCGCCGCCGCCGCCGCCAGTACCGCTTCCTCGATCGTTCGCAG
TCCGGCGACGGCCGCGAAAACGGCTTGTGGAGACTACCCAGGGGCTCGCG
GCAAATGCGGGAAAGGAAAACGGTCGAGGACACGGCGGCGCGGCCGAAAT
AGGCCCTCTCCGACTGAACGCTGCTGCTGCTGCTGCTCCTGCTGCGACTA
GCTCGGTCGCGGGAAGCTGGAGAAGAGCTACGACTGCGGCGCCGGCGGCG
TCCAGAAAACGAACCACTGCTGTGCTTTCACGCCCGGAATGGGATGCCTC
CACGACATGTGAACGAGCGGCTCGCCCGGCGAGCAACCCAGCGACTAAAG
ACAGAGGGTCGGCAGCGGCGCCAGGAGCGGGGCACGGGGTGGTGGGCTTG
TCTTTACATGTTGACAAACCCGATGACCGCTTCCGAAGAGCAGACGGGGC
CTCGGAGGACGTCGTGACACCAAGGGCCGCGGGCGGGGTCGGCGGTGCGG
GGGCTGGGCGGAAACGGGCC back to top
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