mRNA_L-elsbetiae_contig5845.14299.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5845.14299.1
Unique NamemRNA_L-elsbetiae_contig5845.14299.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5845.14299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5845contigL-elsbetiae_contig5845:6985..7564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816630.2481365-CDS-L-elsbetiae_contig5845:6984..72931622816630.2481365-CDS-L-elsbetiae_contig5845:6984..7293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5845 6985..7293 +
1691683697.6676853-CDS-L-elsbetiae_contig5845:6984..72931691683697.6676853-CDS-L-elsbetiae_contig5845:6984..7293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5845 6985..7293 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816630.262018-UTR-L-elsbetiae_contig5845:7293..75641622816630.262018-UTR-L-elsbetiae_contig5845:7293..7564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5845 7294..7564 +
1691683697.678818-UTR-L-elsbetiae_contig5845:7293..75641691683697.678818-UTR-L-elsbetiae_contig5845:7293..7564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5845 7294..7564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5845.14299.1prot_L-elsbetiae_contig5845.14299.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5845 6985..7293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5845.14299.1

>prot_L-elsbetiae_contig5845.14299.1 ID=prot_L-elsbetiae_contig5845.14299.1|Name=mRNA_L-elsbetiae_contig5845.14299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
LIKSLLLSELYFTISSIISDITKGPPPGDDDNQHKTGQRVQQALLPEQHP
DRVSHSSPRLRAHTALGRARQTETGLPACTPGPTRTFPKHNYLPYRTHAY
TF*
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mRNA from alignment at L-elsbetiae_contig5845:6985..7564+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5845.14299.1 ID=mRNA_L-elsbetiae_contig5845.14299.1|Name=mRNA_L-elsbetiae_contig5845.14299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=580bp|location=Sequence derived from alignment at L-elsbetiae_contig5845:6985..7564+ (Laminarionema elsbetiae ELsaHSoW15)
TTGATAAAATCTTTGTTACTTTCAGAGCTCTACTTCACTATTTCATCAAT
CATTTCTGATATCACTAAAGGGCCACCACCGGGCGACGACGACAACCAAC
ACAAAACAGGCCAACGCGTACAACAAGCTCTCCTCCCCGAGCAACACCCA
GACCGGGTCTCCCACAGCTCCCCACGCCTTCGGGCACACACCGCTCTAGG
AAGAGCACGACAAACCGAGACCGGTCTGCCCGCCTGCACCCCCGGCCCGA
CAAGAACGTTTCCGAAACACAACTACCTACCTTATCGCACGCACGCATAC
ACTTTTTGAACATACACATGACACCACTCGAGCTGGAAAAACAAGGAAGG
GGCGCGGCGCAGCACCTACGGAAATCTACCCTCCCTCCCCAAAAAGCAAG
AAATGCACACAACACGCCACGTCACAGAAGATCACATCAGATAGGCCAGA
TCAACCTCGTCAGGATCAACCCCAGGTTGGTCAACCATACACCCCCCTCC
CCCCAGACACGTTGCCCCCGGCAGCGAGACCAGCAGCAGCAGTAGCAGCA
GCCGAACCGCTTCCACCGGTCGCCTGACCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5845:6985..7564+

>mRNA_L-elsbetiae_contig5845.14299.1 ID=mRNA_L-elsbetiae_contig5845.14299.1|Name=mRNA_L-elsbetiae_contig5845.14299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig5845:6985..7564+ (Laminarionema elsbetiae ELsaHSoW15)
TTGATAAAATCTTTGTTACTTTCAGAGCTCTACTTCACTATTTCATCAAT
CATTTCTGATATCACTAAAGGGCCACCACCGGGCGACGACGACAACCAAC
ACAAAACAGGCCAACGCGTACAACAAGCTCTCCTCCCCGAGCAACACCCA
GACCGGGTCTCCCACAGCTCCCCACGCCTTCGGGCACACACCGCTCTAGG
AAGAGCACGACAAACCGAGACCGGTCTGCCCGCCTGCACCCCCGGCCCGA
CAAGAACGTTTCCGAAACACAACTACCTACCTTATCGCACGCACGCATAC
ACTTTTTGATTGATAAAATCTTTGTTACTTTCAGAGCTCTACTTCACTAT
TTCATCAATCATTTCTGATATCACTAAAGGGCCACCACCGGGCGACGACG
ACAACCAACACAAAACAGGCCAACGCGTACAACAAGCTCTCCTCCCCGAG
CAACACCCAGACCGGGTCTCCCACAGCTCCCCACGCCTTCGGGCACACAC
CGCTCTAGGAAGAGCACGACAAACCGAGACCGGTCTGCCCGCCTGCACCC
CCGGCCCGACAAGAACGTTTCCGAAACACAACTACCTACCTTATCGCACG
CACGCATACACTTTTTGA
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