mRNA_L-elsbetiae_contig5840.14294.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5840.14294.1
Unique NamemRNA_L-elsbetiae_contig5840.14294.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5840.14294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5840contigL-elsbetiae_contig5840:10157..10786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size631
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.7811284-CDS-L-elsbetiae_contig5840:10156..105401622816629.7811284-CDS-L-elsbetiae_contig5840:10156..10540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5840 10157..10540 +
1691683697.4100573-CDS-L-elsbetiae_contig5840:10156..105401691683697.4100573-CDS-L-elsbetiae_contig5840:10156..10540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5840 10157..10540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.795181-UTR-L-elsbetiae_contig5840:10540..107861622816629.795181-UTR-L-elsbetiae_contig5840:10540..10786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5840 10541..10786 +
1691683697.4209878-UTR-L-elsbetiae_contig5840:10540..107861691683697.4209878-UTR-L-elsbetiae_contig5840:10540..10786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5840 10541..10786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5840.14294.1prot_L-elsbetiae_contig5840.14294.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5840 10157..10540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5840.14294.1

>prot_L-elsbetiae_contig5840.14294.1 ID=prot_L-elsbetiae_contig5840.14294.1|Name=mRNA_L-elsbetiae_contig5840.14294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
PALPARGPFILSYFSVRSGPSFLAIFVYLLCILIYYEPLNSSQNLGRKKN
ASILHSEKSRRFKNRAATSTACGPFIYSVRLFSSTASLAIRAYYLLILRA
VQIYLLENLAGRRNTRTYIPTHFVRRV*
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mRNA from alignment at L-elsbetiae_contig5840:10157..10786+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5840.14294.1 ID=mRNA_L-elsbetiae_contig5840.14294.1|Name=mRNA_L-elsbetiae_contig5840.14294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig5840:10157..10786+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGCCTTGCCTGCCCGCGGTCCTTTTATTCTGTCATATTTTTCTGTACG
GTCGGGCCCTTCTTTCCTTGCCATCTTCGTTTATCTCTTGTGTATACTTA
TATACTACGAGCCGCTCAATTCTTCTCAAAACTTGGGGAGAAAGAAAAAC
GCTTCCATACTTCATTCGGAGAAGTCTCGCCGTTTTAAAAACCGCGCCGC
GACCTCTACTGCCTGCGGTCCTTTTATTTATTCTGTCCGTTTGTTTTCCA
GCACGGCTTCCCTTGCCATTCGTGCATATTATCTCTTAATACTACGAGCC
GTTCAAATCTATCTTCTTGAAAACTTAGCAGGCAGAAGAAACACGCGCAC
CTACATACCTACACACTTTGTTCGTAGAGTATAACTCGAGATCGAGAGTC
TGAGAGCGGCCACCGAGCCGAGAACGGGGAATGGCCCGGCCCCACTCTAC
TGCTCTTCGTCGACACCAACACACGAAAGCACGGTACTCAAGAGAGACGC
GGCCCTCCCTCCGCCCTTGCGTTTTGCGGCACCCCTCTGATAAAAGTATG
TTGCTCGTCCGTTTTGCCGCACAGCGGAGGGACCACTTCTTGTCAAAAAC
CAAAAGCCCGTCCTGCACATGGTAAAACGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5840:10157..10786+

>mRNA_L-elsbetiae_contig5840.14294.1 ID=mRNA_L-elsbetiae_contig5840.14294.1|Name=mRNA_L-elsbetiae_contig5840.14294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig5840:10157..10786+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGCCTTGCCTGCCCGCGGTCCTTTTATTCTGTCATATTTTTCTGTACG
GTCGGGCCCTTCTTTCCTTGCCATCTTCGTTTATCTCTTGTGTATACTTA
TATACTACGAGCCGCTCAATTCTTCTCAAAACTTGGGGAGAAAGAAAAAC
GCTTCCATACTTCATTCGGAGAAGTCTCGCCGTTTTAAAAACCGCGCCGC
GACCTCTACTGCCTGCGGTCCTTTTATTTATTCTGTCCGTTTGTTTTCCA
GCACGGCTTCCCTTGCCATTCGTGCATATTATCTCTTAATACTACGAGCC
GTTCAAATCTATCTTCTTGAAAACTTAGCAGGCAGAAGAAACACGCGCAC
CTACATACCTACACACTTTGTTCGTAGAGTATAACCTGCCTTGCCTGCCC
GCGGTCCTTTTATTCTGTCATATTTTTCTGTACGGTCGGGCCCTTCTTTC
CTTGCCATCTTCGTTTATCTCTTGTGTATACTTATATACTACGAGCCGCT
CAATTCTTCTCAAAACTTGGGGAGAAAGAAAAACGCTTCCATACTTCATT
CGGAGAAGTCTCGCCGTTTTAAAAACCGCGCCGCGACCTCTACTGCCTGC
GGTCCTTTTATTTATTCTGTCCGTTTGTTTTCCAGCACGGCTTCCCTTGC
CATTCGTGCATATTATCTCTTAATACTACGAGCCGTTCAAATCTATCTTC
TTGAAAACTTAGCAGGCAGAAGAAACACGCGCACCTACATACCTACACAC
TTTGTTCGTAGAGTATAA
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