mRNA_L-elsbetiae_contig584.14291.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig584.14291.1 vs. uniprot
Match: A0A6H5KHA4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHA4_9PHAE) HSP 1 Score: 433 bits (1114), Expect = 9.030e-148 Identity = 218/292 (74.66%), Postives = 246/292 (84.25%), Query Frame = 2 Query: 290 IATLGVFFTLPEQGVTSPEILTRCSATPVRRTPSAPLRFVAAAHAVMPWAFPGYHDESHAWLNFLDESHVRYYAELRDPLTGTVLTKHELVNLAKHPSRDIAALGLKGADDDADEDEERRVLDDIRSRGIPFSPLPLRRRLIGQSDALQIVGYEVRECPGGLGEEEDPGMMMVRASGELAARTASQAFVSTNHATLNPGMCGAAVLDSDMELCGCVEGVVPTPPPEADVEAHVRALQGMPCVVEWKDLNTLLKATMDDADSADDA--------DDERQAWPEELLSRRDEAR 1141 +ATLGVFFTLP+QGV +PEILTRCSATPVR+T S+PLRF+AAAHAV+PWAFPGYHDESHAWL F+DE++VRYYAELRDP TG VL +HEL++LA+HPSRD+AALGLKG DD D E R L D+ S+GIPFSPLPLRRRLI S++L+IVGYEVRE PGGLG+ EDPGMMMVRA G+LAARTA QAFV T HATLNPGMCGAAVLDSD ELCGCVEGVVPT PPEA VEAHVRALQGMPCVVEWKDL+TLL ATM D D D A D R+ WP++ LS R+EA+ Sbjct: 1 MATLGVFFTLPDQGVNTPEILTRCSATPVRQTTSSPLRFLAAAHAVVPWAFPGYHDESHAWLKFIDETNVRYYAELRDPFTGAVLAQHELISLARHPSRDMAALGLKGGDDG---DGESRFLRDVGSKGIPFSPLPLRRRLIEPSESLRIVGYEVREQPGGLGQGEDPGMMMVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAAVEAHVRALQGMPCVVEWKDLDTLLTATMGDKDDGDVAGSGGDVGKQDARETWPKKPLSSREEAQ 289
BLAST of mRNA_L-elsbetiae_contig584.14291.1 vs. uniprot
Match: D7G6F8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6F8_ECTSI) HSP 1 Score: 211 bits (537), Expect = 9.080e-63 Identity = 105/129 (81.40%), Postives = 113/129 (87.60%), Query Frame = 2 Query: 698 LRRRLIGQSDALQIVGYEVRECPGGLGEEEDPGMMMVRASGELAARTASQAFVSTNHATLNPGMCGAAVLDSDMELCGCVEGVVPTPPPEADVEAHVRALQGMPCVVEWKDLNTLLKATMDDADSADDA 1084 LRRRLI S++L+IVGYEVRE PGGLG+ EDPGMM+VRA G+LAARTA QAFV T HATLNPGMCGAAVLDSD ELCGCVEGVVPT PPEA+VEAHVRALQGMPCVVEWKDL+TLL ATM D D D A Sbjct: 25 LRRRLIDPSESLRIVGYEVREQPGGLGQGEDPGMMIVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAEVEAHVRALQGMPCVVEWKDLDTLLTATMGDKDDGDAA 153
BLAST of mRNA_L-elsbetiae_contig584.14291.1 vs. uniprot
Match: A0A6U0VMV8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VMV8_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.350e-10 Identity = 76/269 (28.25%), Postives = 115/269 (42.75%), Query Frame = 2 Query: 308 FFTLPEQGVTSPEILTRCSATPVRRTPSAPLRFVAAAHAVMPWAFPGYHDESHAWLNFLDESHVRYYAELRDPLTGTVLTKHEL-VNLAKHPSRDIAALGLKGADDDADEDEERRVLDDIRSRGIPFSPLPLRRRLIGQSDALQ-------IVGYEVRECPGGLGEEEDPGMMMVRASGELAARTASQAFVST--NHATLNP-------------------------GMCGAAVLDSDMELCGCVEGVVPTPPPEADV-EAHVRALQGM 1006 +F LPEQG++SPE+L+R T + S L + ++H P+ +P Y+ + WL+ + + V Y ELRD L G V+ L ++ H SRDI +GL E+ L+ + PL R+ + Q A Q I G+EV E GE+E+ Q VST + L P GMCG+ ++D+D ++ G VEGV+ P A + E +AL+ M Sbjct: 35 YFFLPEQGMSSPELLSRTGCTILDGKRSGSLVMLTSSHVAAPFRWPQYYGDV-PWLHHVRQDCVTYALELRD-LQGEVVDTAPLPASVVHHESRDICVMGLP---------EDLPFLEHLE---------PLVRQDLSQDAASQGAEKVYYIHGFEVGEM---AGEDEEKTXXXXXXXXXXXEERTGQGSVSTEDDRRPLKPLNVEARFVAAKGDTIYARPAMELPFGMCGSPMVDADGKVAGVVEGVIQGPAANAQITEEQRQALEKM 280
BLAST of mRNA_L-elsbetiae_contig584.14291.1 vs. uniprot
Match: B7FTD7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTD7_PHATC) HSP 1 Score: 58.5 bits (140), Expect = 1.700e-5 Identity = 54/206 (26.21%), Postives = 87/206 (42.23%), Query Frame = 2 Query: 398 LRFVAAAHAVMPWAFPGYHDESHAWLNFLDESHVRYYAELRDPLT-GTVLTKHELVNLAKH--PSRDIAALGLKGADDDADEDEERRVLDDIRSRGIPFSPLPLRRRLIGQSDALQIVGYEVRECPGGLGEEEDPGMMMV------------------RASGELAARTASQAFVSTNHATLNPGMCGAAVLDSDMELCGCVEGVVP 952 + VA++H + P+ + Y+ + WL + + H Y E+ D L K L + H RDI+ + K EE L +++ G+ L ++ + + + GY V E +++ G V + G+L+ T + F +T L G+CGA VLDSD ELCG VEG+VP Sbjct: 113 VHIVASSHVLSPFLWKDYYPQD--WLTQVRQEHCTYALEVFDSENPNESLAKIGLDSTPFHHPEGRDISVIHFK---------EEESSLKTLKNLGVKIQYLRSPEKMYEKGETMYFDGYVVSEP--NTADDQQYGSKPVNHGNTNDKIEDLRVFYPHKEIGKLSFHT-NDRFFATTPEPLPEGLCGAPVLDSDGELCGTVEGIVP 304
BLAST of mRNA_L-elsbetiae_contig584.14291.1 vs. uniprot
Match: A0A5D6YC45_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YC45_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.730e-5 Identity = 64/268 (23.88%), Postives = 100/268 (37.31%), Query Frame = 2 Query: 275 SLREY-IATLGVFFTLPEQGVTSPEILTRCSAT-------PVRRTPSAPLRFVAAAHAVMPWAFPGYHDESHAWLNFLDESHVRYYAELRDPLTGT-----------------------------VLTKHELV-NLAKHPSRDIAALGLKGADDDADEDEERRVLDDIRSRGIPFSPLPLRRRLIGQSDALQIVGYE----VRECPGGLGEEEDPGMMMVRASGELAARTASQAFVSTNHATLNPGMCGAAVLDSDMELCGCVEGVVP 952 SLR + + +L F LP +G+ E L+R SA P + + H PW FP Y + WL + E V + +L + T VL + L ++ HPSRD+A L L +D AD + + D + L R+ + D L G++ G G+ + G G ++ + + L GMCG AV++++ E G VEG+VP Sbjct: 10 SLRRHAVLSLTTKFRLPHEGMADLEYLSRGSAFLLDTKAGPKTTRSIGDIAVLTCQHVACPWLFPKYFADKWDWLQHVSEEFVVHSLQLLELPPATPXXXXXXXXXXXXXXXXXXXXXXQVFVPRVLAEFPLERHVWLHPSRDVAMLAL--SDSIADVEWDAYAAGDWN---LELLTLQARKTSVAAGDVLLFTGHKQFSSTELAVVGGGDAKAVGQYPKEVLGNFVGESSQGQAFAWSEEVLEEGMCGGAVVNTEGECVGLVEGIVP 272
BLAST of mRNA_L-elsbetiae_contig584.14291.1 vs. uniprot
Match: A0A2P6NBV3_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBV3_9EUKA) HSP 1 Score: 56.2 bits (134), Expect = 5.570e-5 Identity = 37/119 (31.09%), Postives = 58/119 (48.74%), Query Frame = 2 Query: 266 DVPSLREYIATLGVFFTLPEQGVTSPEILTRCSATPVRRTPSAP--LRFVAAAHAVMPWAFPGYHDES-HAWLNFLDESHVRYYAELRDPLTGTVLTKHELV-NLAKHPSRDIAALGLK 610 D S + L F P+ G+ E+L+R S V + L + AH PW FP ++ ES H WL +DE++VR + ++DPLTG K + ++ K D+ A+ L+ Sbjct: 41 DASSPTRHAYALISEFLHPDLGMKDFEVLSRSSLFLVNASKGQEKRLHLLGPAHVTHPWLFPHFYPESSHDWLKHVDETYVRLFLGIQDPLTGETKAKFRIDRDITKSDHLDLVAMTLE 159 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig584.14291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig584.14291.1 >prot_L-elsbetiae_contig584.14291.1 ID=prot_L-elsbetiae_contig584.14291.1|Name=mRNA_L-elsbetiae_contig584.14291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=356bp MVAVRIPLVLRWCRARPLETRRALLDGNRRSNGLSLRGKAVGTRSLCSSTback to top mRNA from alignment at L-elsbetiae_contig584:26885..29859- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig584.14291.1 ID=mRNA_L-elsbetiae_contig584.14291.1|Name=mRNA_L-elsbetiae_contig584.14291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2975bp|location=Sequence derived from alignment at L-elsbetiae_contig584:26885..29859- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig584:26885..29859- >mRNA_L-elsbetiae_contig584.14291.1 ID=mRNA_L-elsbetiae_contig584.14291.1|Name=mRNA_L-elsbetiae_contig584.14291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2136bp|location=Sequence derived from alignment at L-elsbetiae_contig584:26885..29859- (Laminarionema elsbetiae ELsaHSoW15)back to top |